Clc10G05040 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G05040
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Location	ClcChr10: 5571011 .. 5575869 (-)
RNA-Seq Expression	Clc10G05040
Synteny	Clc10G05040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACATTCAGCTAAATAAAGAAAAAAAATAAAAGAGAGAAAGAAATAAAATTTTATTAAGCTAAAGGAGAAAACCGGCGGAAGGAGAACAACGCTAAACAGACCATTTTTTCTTAAACCCTATTTCACGTTCAGCCACACCCCCTCCCCGCCGCCGTACGCTGCACTCTAATCTGCCGCATTCTCACCCTTCCAACGAACTCGCCGCCTCTCCCTCCCTCTCACACTCTCTCGCCCCTCCGAGCAATCAGAGTTACTTATCTCTGTTGTTTTTTTTTCCTTCAGAAATAGAAACAGTGGTTCAACCCCCGCCGTTGGTGAGATCGCACCGCCCCTCACGCGTACTTCCGCTTATTTTTCAGCTCCCGAGGTTTCTATTTGTTTGTTTATTTTATTTTATTTTGTTTGTTGATTTATGTTGAGTTATTCTGTTCACTCACGAAGATGAAAAAAAAAGGGTTGGAATCGAAAATCTAAATTATAATGATTGAAATTATTATTATCCGTTTTAAAGTAAATAGCAAATTACAGTGAACCAAGGAAATATGAAACTTTGGAGTTTGCTTTAATGGGCTTGAATCTGCTTGAACAGAACACACTATCTATGCATATTGAATATGAACTGGCATAGGGACAGCTTAAACTCAATAAAAAAGATATCCTGTAGGGTAAAATTAGAAACGTATTCTTTTAAGTTTTAAATATTGGCAAATCCGCCACGAGTTTTTCGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGATTTTAAATCACAACTGATTTAAATTCGTTGTTCTACTGATTTATTTATTTTTCCATTCAAACACTTGGAATGATTTCAAATCCTTTCAAATCCAGGAGTTCCAAACAAAGGCAAGTAAAGGAAACGGCGCAGGCTGCCATTTCTCTCAGCAGTTTGAAGTAGGAATTTTAGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAAAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGTGATATTTGAAATCTGTTATTTTTCTGTTGAAGCTTTTATCATCTTCGGTTTGTTGTTTTTGTAGATTGGTTGTATCTGTAAATCTCATTCATATTGTGTCAATTAAGCATAAATGCATTTAAGTAACATATGCTTAATATTTGTATTGTTTCAAAGGTGATAAAAGTGGCTTTAGTTGATTTAATGGGTTTGATTAAGATGGAAGGAATAACAGTTTCTTTTGGTTAAAAACAAGCTTTCACTGAAAATAAATGAAAGAATAAAAGGGGAATTCACAAGGAACACCCAAGGGGAGCGAAATTAATCCAAAAAAGGGCTATAGTCAATCAAAATAAGGCTAAGGCCTAAAGGAAAATTACAAAAGCCTTTGCAAATGGAGACCCAAAGAGAATTATGAAATTTATTAGCGAACCTCAACCCCCTGCAAAAGTTTCAACTGCTCCAAAAATTCTATTGTTCCAAAGCACCCAAAAATAGCACAAAAACAAGCACACCAAAGGTTGCTGCCCATATATTGCAAAGGGGAGTGGGACATACACAACTCAAGCAAATCTCTACATCTTAGGCTATGCCAAACTAAGAGAGAGCCTAAACAACCCACTTCATGACGATCTAGTGAACTGATGAAACCAAAGAAGATGATCCAAATCTTCACCTGCTTCCTTGCAAAAGATACAACATTGCGGCTCGATCAACTTGGGCGAGAATCCCTGAACATAATCCAAAGCCTGTCAAGAAGGACCTGCCACACAAAATAATTGATGTTCTTTGGCATTTTAATCTTCCAAAGTTGTGAAAAGATGGGAGAACTTCAAGAAGAAGAGGGGCTCACTGAACACTGAAAAACGACTGACAAGAGAACTCATATGAAGGACTAGGACTCCATACCTAACAGTCATTTCTCCACCCCAAGAGAGTAAAATCACCATTTAAATCAAGGAGGGTGATATTTAGTTTTGACTTTTTAGAAATGGTTATTTCATTTCATTTCTTTATTGAGACATTGAGTGGATTATGCTTATCTTGAAATAAAGCAAGGTGTTCTGCATGCAATGAATGAATTTCTGTCAGCATTATATTTCTTTTTGTTTTATTTAGCCCTAGTAGTATCGCCCTTAACATCCTAGAAGAAATGTAATGTGATATTGTGATTTTCTTTCTTACAAAGAAGTAGATGCCTTTTTACAGTTTCAGGCTTCTGTATGTTAACTCTATCTGATGCTTTTCATTGAAGAAGCAGTGACCCTAATAGGTCCTCTTGGACAATTGAAAAACTTTTATAGTTATTAGCTGCGGCACACATTTCTTCATTTAGTTAGTGGGTGATAAGGCTGTCCATAACTACCGAGAGGATTTTTAGTTTGTTGGTTCATTTAGTAGCTCGAATATAGCCATTCCAACATGTCCCTAGTTCGAATCTCATAATCGGCATGGGGTTCAGCCTTTCAGGCGTTAATGTATGATGGAGTCTGGAATTGGATTTGATTCCAAAGAACTGTCCATAATTGAAGGGAACATCATTATCTATAGTCCTAATATAGATGGGGAGTCAAAACTGATTAGTTACTACTTAGTTTGAACAACCATTTTTTTTTAATTGAAATAGATGGCTTTCATTGAGAAAAAAATTGAAAGAATACACGGACATACAAAAACCAAGTTCAGGAAAAGGAGACTCCCTCTACTGGAAGGAATTCCAATAAAGCAAAATTATGCCTATAGAATAATTACAAAAAATCTTCGAAATTGAAGCCCAACGGGACATATGATAATGAATGAGAGACCAAAGCTCCCTAAAATCCCTCTCCACTCCCCCAAAAACCCGGCTATTGTACTCCCCCACAAAACCCATAAAATCGCATAAATAGCAGCACACCAAAGAAGCTGGCCTCTCTCCCCAAAAGGCAGATTGAGGAGGCACTCCTCGATCATCGCACCAATGTCTTTGACTTAGTTTGAACAACCATAAGAGCCTAATTTTACTAGGGTACGTCTACTGTCTACATACTAAAATTTTCATATTGCCTTTGGTAAACTCCTCTTACTATCTGGAGACTTAGGATTTTGATACTTTTAAAAAGCCATAAAGAACAACCAGAGGTTTACATAAGCCATGACCGGGAGTTTTGACCAGCAATCAAGTTTGCTCTGCCCATCATCAAAAGTTATCCATTAAATTCCTGCAAACTGTTCAATCAGTATTTTTTTACTACATGGCTGAACCAAACAATACCTGGAACTACCCATTTTGTAATCATCTGAGGGAAAGTTTAGGGTCCGGTCACCAACTCAGATGTCATCCCAAGACAAAGTGTTACCGTTTATACTTCCCATTATCTTTGAGAAGTTTTAAAATTTTCTCACAACTGAAATTAACAATCCAAGGATGCCTACCATCATTCATAACTGTTTTTTTAATTTAACCAACCAGTTGAGCATTTCCAATCTTGTCACCGATTTTATGCCTTGCAGACTTTCTCACATTGAAAATGCCTACACACTTAGAAGGAAGAACCACATTTTTAGAGTTACCCCCCTGCTCAATCACTCTTCTTGGCTCAGAACCACAGACCTCCAATTTATGAGGTGAGTTCTTCCTTCATGATTAATGAAGCTTCTGATCTCTAAACTCCAATCACCTAGCCATCTTATTAGGGACCTCATAGAAATTGAAGGTTGGAATGCGTCAGAAGATTGCTTGGACAAGTTTAATCGATCTCCCTTAAGCAGTTGTAGTTAAACCCTGCAAAGAAGGGAGGCATACTCATATGATCCTTGTATACTTTTACTAACTAGCTGAATATGACTTGGGCTATTAGACCTTTCGTTTATACACAGTTGGAACTATTAGAAGTCGAAGTCCCTACCCAAACTCTGCCGTGCATAGTGTACACAATATCTTAGGAGTTCTTAATTACAAGTTGTTCCTCAACTGTATTGTGAAGTTTCCCGACTTTGTTCTGGTTCCTGCAAAAAAATTTGATCTATTTGTTTATAATACATATATCTCAATCAATTAATGACATTATTACTCTTTCTTTTATGGTAAAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTAGTGAAGCATCGCGACACAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTCCTTTACGAAGCATGACGGATGAAGATGACGAAGATGAAGACGACGATGACGATGACGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAGTGAACTTCGCTCGTCTCTATTATCATGGCCCAACTTTGAACTTGTTGAACCATTTTTGGATTCTAGATAGACAAATAAAGAGGTCCATTGTTTCTTTAGTTGTCCATATCATCTGTTTCTGAGAAACAAAGATCCATAAATGTCTTTTTCTCAAACTTCCATTAGAATGGGATGTTTGGGGGATGATTTCCAGGTCTTGGGTTTCAGCTCTAAATGAAAAGTTCAAGAAATGAAAATCCTTGTCTGTCTTTTAAAGCTTGGTGTAGTGTAATCTTGCTTGTATTGACTTTGTATGAAATGAAACTGGAGCAAATATGAGGTTTGTTGAAGATCTGGTTGAGATAATCTAGACACGTTTGTTTCAAGTGATATTCGGTGAATATGATTGTGGTTCTTGAA

mRNA sequence

AAAACATTCAGCTAAATAAAGAAAAAAAATAAAAGAGAGAAAGAAATAAAATTTTATTAAGCTAAAGGAGAAAACCGGCGGAAGGAGAACAACGCTAAACAGACCATTTTTTCTTAAACCCTATTTCACGTTCAGCCACACCCCCTCCCCGCCGCCGTACGCTGCACTCTAATCTGCCGCATTCTCACCCTTCCAACGAACTCGCCGCCTCTCCCTCCCTCTCACACTCTCTCGCCCCTCCGAGCAATCAGAGTTACTTATCTCTGTTGTTTTTTTTTCCTTCAGAAATAGAAACAGTGGTTCAACCCCCGCCGTTGGTGAGATCGCACCGCCCCTCACGCGTACTTCCGCTTATTTTTCAGCTCCCGAGGAGTTCCAAACAAAGGCAAGTAAAGGAAACGGCGCAGGCTGCCATTTCTCTCAGCAGTTTGAAGTAGGAATTTTAGTGCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAAAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGACCTTTCGTTTATACACAGTTGGAACTATTAGAAGTCGAAGTCCCTACCCAAACTCTGCCGTGCATAGTGTACACAATATCTTAGGAGTTCTTAATTACAAGTTGTTCCTCAACTGTATTGTGAAGTTTCCCGACTTTGTTCTGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTAGTGAAGCATCGCGACACAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTCCTTTACGAAGCATGACGGATGAAGATGACGAAGATGAAGACGACGATGACGATGACGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAGTGAACTTCGCTCGTCTCTATTATCATGGCCCAACTTTGAACTTGTTGAACCATTTTTGGATTCTAGATAGACAAATAAAGAGGTCCATTGTTTCTTTAGTTGTCCATATCATCTGTTTCTGAGAAACAAAGATCCATAAATGTCTTTTTCTCAAACTTCCATTAGAATGGGATGTTTGGGGGATGATTTCCAGGTCTTGGGTTTCAGCTCTAAATGAAAAGTTCAAGAAATGAAAATCCTTGTCTGTCTTTTAAAGCTTGGTGTAGTGTAATCTTGCTTGTATTGACTTTGTATGAAATGAAACTGGAGCAAATATGAGGTTTGTTGAAGATCTGGTTGAGATAATCTAGACACGTTTGTTTCAAGTGATATTCGGTGAATATGATTGTGGTTCTTGAA

Coding sequence (CDS)

ATGCCTCTTTACGATTGCATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAAAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGACCTTTCGTTTATACACAGTTGGAACTATTAGAAGTCGAAGTCCCTACCCAAACTCTGCCGTGCATAGTGTACACAATATCTTAGGAGTTCTTAATTACAAGTTGTTCCTCAACTGTATTGTGAAGTTTCCCGACTTTGTTCTGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTAGTGAAGCATCGCGACACAAAATATGGCCTGGAATTCCTTAGCGAAGATGATGGAAAGAGTGAACTCAGCAAATTTCCTTTACGAAGCATGACGGATGAAGATGACGAAGATGAAGACGACGATGACGATGACGATGAAGAATACAACGTGGAACAAGAAGAGAAGAAAGCATAG

Protein sequence

MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYYQTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDEDDDDDDDEEYNVEQEEKKA

Homology

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BLAST of Clc10G05040 vs. NCBI nr
Match: XP_038905169.1 (uncharacterized protein LOC120091279 [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 8.9e-59
Identity = 135/201 (67.16%), Postives = 144/201 (71.64%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVVCDIKSFGVVQLGYGIKKL+GRYY
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLEGRYY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE- 180
           PN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSE+DGKSEL KFP   M D+ DEDE 
Sbjct: 121 PNVNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEEDGKSELGKFPRLDMLDDKDEDED 153

Query: 181 --DDDDDDDEEYNVEQEEKKA 199
             DDDD+DDEEYNVEQE+++A
Sbjct: 181 EGDDDDNDDEEYNVEQEKREA 153

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BLAST of Clc10G05040 vs. NCBI nr
Match: XP_038903157.1 (uncharacterized protein LOC120089825 [Benincasa hispida])

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-58
Identity = 132/198 (66.67%), Postives = 143/198 (72.22%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLY+CM+LMKPHVKKEALLDLVARVGKHVFR+NGVVCDI+SFGVVQLGYGIKKLDGRYY
Sbjct: 1   MPLYECMVLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIRSFGVVQLGYGIKKLDGRYY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDED 180
           P+ NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSEL +FP  SM D+ D DED
Sbjct: 121 PSTNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELREFPRLSMMDDKDGDED 150

Query: 181 DDDDDDEEYNVEQEEKKA 199
           D+DDDDEEYNVEQE+++A
Sbjct: 181 DNDDDDEEYNVEQEKREA 150

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BLAST of Clc10G05040 vs. NCBI nr
Match: XP_022936695.1 (uncharacterized protein LOC111443208 [Cucurbita moschata])

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-57
Identity = 133/198 (67.17%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE- 180
           PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK+EL+KFP   M  +DD DE 
Sbjct: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPRFKMIGDDDADEE 150

Query: 181 -DDDDDDDEEYNVEQEEK 197
            DDDDDDDEEY+VEQEE+
Sbjct: 181 DDDDDDDDEEYDVEQEER 150

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BLAST of Clc10G05040 vs. NCBI nr
Match: XP_023539684.1 (uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-56
Identity = 132/198 (66.67%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE- 180
           PNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK+EL+KFP  +M  +DD DE 
Sbjct: 121 PNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKNELNKFPRFNMIGDDDADEE 150

Query: 181 -DDDDDDDEEYNVEQEEK 197
            DDDDDDDEEY+VEQEE+
Sbjct: 181 DDDDDDDDEEYDVEQEER 150

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BLAST of Clc10G05040 vs. NCBI nr
Match: XP_030954732.1 (uncharacterized protein LOC115977176 [Quercus lobata])

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-56
Identity = 127/197 (64.47%), Postives = 142/197 (72.08%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYY
Sbjct: 1   MPLYDCMLLLKPHVKKEALMELVARIGKHVYRRNGVLADMKSFGMVQLGYGIKKLDGRYY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDED 180
           PN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK ELSKF   S+ D+DD DED
Sbjct: 121 PNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFTRSSIYDDDDFDED 149

Query: 181 DDDDDDEEYNVEQEEKK 198
           DDDDDD+EY+V+QEEKK
Sbjct: 181 DDDDDDDEYDVDQEEKK 149

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BLAST of Clc10G05040 vs. ExPASy TrEMBL
Match: A0A6J1FEF6 (uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC111443208 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.8e-57
Identity = 133/198 (67.17%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE- 180
           PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK+EL+KFP   M  +DD DE 
Sbjct: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPRFKMIGDDDADEE 150

Query: 181 -DDDDDDDEEYNVEQEEK 197
            DDDDDDDEEY+VEQEE+
Sbjct: 181 DDDDDDDDEEYDVEQEER 150

[Close]

BLAST of Clc10G05040 vs. ExPASy TrEMBL
Match: A0A7N2L1D1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 5.2e-57
Identity = 127/197 (64.47%), Postives = 142/197 (72.08%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+R+NGV+ D+KSFG+VQLGYGIKKLDGRYY
Sbjct: 1   MPLYDCMLLLKPHVKKEALMELVARIGKHVYRRNGVLADMKSFGMVQLGYGIKKLDGRYY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDED 180
           PN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK ELSKF   S+ D+DD DED
Sbjct: 121 PNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFTRSSIYDDDDFDED 149

Query: 181 DDDDDDEEYNVEQEEKK 198
           DDDDDD+EY+V+QEEKK
Sbjct: 181 DDDDDDDEYDVDQEEKK 149

[Close]

BLAST of Clc10G05040 vs. ExPASy TrEMBL
Match: A0A6J1CN79 (uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013137 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-56
Identity = 132/198 (66.67%), Postives = 141/198 (71.21%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHVKKEALLDLVARVGKHVFR+NGVV DIKSFGVVQLGYGIKKLDGR+Y
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFP-LRSMTDEDDEDE 180
           PNMNKELHYLNKEDR+LRWLLVKHRDTKYGLEFLSEDD K ELSKFP +  M D+D ++E
Sbjct: 121 PNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPRIGIMGDDDTDEE 150

Query: 181 DDDDDDDEEYNVEQEEKK 198
           DDDDD+DEEY+VEQEE K
Sbjct: 181 DDDDDNDEEYDVEQEESK 150

[Close]

BLAST of Clc10G05040 vs. ExPASy TrEMBL
Match: A0A6A1UIP2 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G029412 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.5e-56
Identity = 128/198 (64.65%), Postives = 149/198 (75.25%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL+KPHV KEAL+DLVAR+GKHV+R+NGV+ D+K FG VQLGYGIKKLDGRYY
Sbjct: 1   MPLYDCMLLLKPHVTKEALMDLVARIGKHVYRRNGVLTDMKCFGAVQLGYGIKKLDGRYY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKF-PDFVLGQLMQMTMMA 120
           Q F     G + S      +A  S+     +   +  ++   K+   F +GQLMQMTMMA
Sbjct: 61  QRF-----GDVVSMPEIAKTAPLSLGFCRNLFLLQSSVSSYSKYLLPFGIGQLMQMTMMA 120

Query: 121 TPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDE 180
           TPNMN ELHYLNKEDRLLRWLL+KHRDTKYGLEFL+EDDGK ELSKF   S+ DED    
Sbjct: 121 TPNMNNELHYLNKEDRLLRWLLIKHRDTKYGLEFLTEDDGKGELSKFTRSSIYDED---- 180

Query: 181 DDDDDDDEEYNVEQEEKK 198
           +DDDDDDEEY V+QE KK
Sbjct: 181 EDDDDDDEEYEVDQEVKK 189

[Close]

BLAST of Clc10G05040 vs. ExPASy TrEMBL
Match: A0A6J1KXT7 (uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.9e-55
Identity = 126/197 (63.96%), Postives = 138/197 (70.05%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFR+NGVV D+KSFGVVQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQMTMMAT
Sbjct: 61  Q------------------------------------------------GQLMQMTMMAT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDED 180
           PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK+EL+KFP  SM  +DD DE+
Sbjct: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPRFSMIGDDDADEE 149

Query: 181 DDDDDDEEYNVEQEEKK 198
           DDDDDD++   E E ++
Sbjct: 181 DDDDDDDDVEQEGERRE 149

[Close]

BLAST of Clc10G05040 vs. TAIR 10
Match: AT3G18760.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 87/183 (47.54%), Postives = 108/183 (59.02%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
           Q                                                GQLMQ+TMM T
Sbjct: 61  Q------------------------------------------------GQLMQITMMTT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDED 180
           PNMNKELHYLNKED+LLRWLLVKHRD K G     ++D  +  ++    S+ D    DED
Sbjct: 121 PNMNKELHYLNKEDKLLRWLLVKHRDIKIGQS--EKEDSLTVPNRLTSGSLYDGSSSDED 133

Query: 181 DDD 184
           D++
Sbjct: 181 DNN 133

[Close]

BLAST of Clc10G05040 vs. TAIR 10
Match: AT3G18760.2 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.0e-33
Identity = 82/183 (44.81%), Postives = 103/183 (56.28%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRKNGVVCDIKSFGVVQLGYGIKKLDGRYY 60
           MPLYDCMLL KP ++KE L+DLVAR+GKHV+ +NGV+ +IKSFG V+LGYGI+KLDGR+Y
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QTFRLYTVGTIRSRSPYPNSAVHSVHNILGVLNYKLFLNCIVKFPDFVLGQLMQMTMMAT 120
                                                                Q+TMM T
Sbjct: 61  -----------------------------------------------------QITMMTT 120

Query: 121 PNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKSELSKFPLRSMTDEDDEDED 180
           PNMNKELHYLNKED+LLRWLLVKHRD K G     ++D  +  ++    S+ D    DED
Sbjct: 121 PNMNKELHYLNKEDKLLRWLLVKHRDIKIGQS--EKEDSLTVPNRLTSGSLYDGSSSDED 128

Query: 181 DDD 184
           D++
Sbjct: 181 DNN 128

The following BLAST results are available for this feature:

BLAST of Clc10G05040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905169.1	8.9e-59	67.16	uncharacterized protein LOC120091279 [Benincasa hispida]	[more]
XP_038903157.1	2.0e-58	66.67	uncharacterized protein LOC120089825 [Benincasa hispida]	[more]
XP_022936695.1	3.7e-57	67.17	uncharacterized protein LOC111443208 [Cucurbita moschata]	[more]
XP_023539684.1	1.1e-56	66.67	uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]	[more]
XP_030954732.1	1.1e-56	64.47	uncharacterized protein LOC115977176 [Quercus lobata]	[more]

BLAST of Clc10G05040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G05040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FEF6	1.8e-57	67.17	uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A7N2L1D1	5.2e-57	64.47	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A6J1CN79	1.2e-56	66.67	uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6A1UIP2	1.5e-56	64.65	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR0G029412 PE=4 SV=1	[more]
A0A6J1KXT7	4.9e-55	63.96	uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530...	[more]

BLAST of Clc10G05040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18760.1	1.3e-36	47.54	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]
AT3G18760.2	4.0e-33	44.81	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 1..165 e-value: 4.3E-11 score: 44.6
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 4..66 e-value: 6.0E-9 score: 36.1
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 1..63
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 108..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..198
None	No IPR available	PANTHER	PTHR21011:SF14	SUBFAMILY NOT NAMED	coord: 108..193
None	No IPR available	PANTHER	PTHR21011:SF14	SUBFAMILY NOT NAMED	coord: 1..63
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 1..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G05040.2	Clc10G05040.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome