Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCCAAGATTGTCTTTCTTCTGGTTCTTGGTGCTTTTCTCTGCACCACTTCTGCGGCTCGTAAGCTGAGTACTGCCTCTCTTCAAGATGAAAAGTTCTTCCACCGTCCTGGATTTGGTGGCGGAGGTGGTGGAGGGTTCGGTGGAGGCGGAGGGTTAGGTGGGGGTTCCGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGCGGCGGTGTTGGTAGTGGTGGCGGTGCTGGAGGAGGGTTTGGTGGAGGAGGAGGTGGTGGAGTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTTGGAGGAGGGGCTGGTGGAGGAGGAGGACTTGGTGGTGGCGCTGGCGGTGGAGGAGGGTTCGGTGGCGGGGGTGGACTAGGGGGCGGAGCAGGCGGAGGGTTCGGTGGTGGCGCCGGTGTAGGAGGTGGATTCCCTTGAAGGATAATGATTTTACCATCAAGGAGAAAAGAGTGTTGAGAACGTCCCTAAACTATATAGGTTTTGTTATTAGTTTTTTTTTTGCATATATGTGCAATGTGGTTTGTGACTTTGTGTTTGTGTTTGTGTTTGTTGTTTTCTATTCTAAAATGAAAAGGTTTCATATGTGCAATAACCCTCTCTTTTTTACCACAATTTATCATATTCCAATTGTAATTTCCAAGAAATAAAAAAGAAAACAAATTATTTTTATGGAAAATCTCAATCTCAAATTCTCATTGGATGACCAATTATGATATGGAACCCAAATCTTTATAATTATT
mRNA sequence
ATGACTTCCAAGATTGTCTTTCTTCTGGTTCTTGGTGCTTTTCTCTGCACCACTTCTGCGGCTCGTAAGCTGAGTACTGCCTCTCTTCAAGATGAAAAGTTCTTCCACCGTCCTGGATTTGGTGGCGGAGGTGGTGGAGGGTTCGGTGGAGGCGGAGGGTTAGGTGGGGGTTCCGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGCGGCGGTGTTGGTAGTGGTGGCGGTGCTGGAGGAGGGTTTGGTGGAGGAGGAGGTGGTGGAGTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTTGGAGGAGGGGCTGGTGGAGGAGGAGGACTTGGTGGTGGCGCTGGCGGTGGAGGAGGGTTCGGTGGCGGGGGTGGACTAGGGGGCGGAGCAGGCGGAGGGTTCGGTGGTGGCGCCGGTGTAGGAGGTGGATTCCCTTGAAGGATAATGATTTTACCATCAAGGAGAAAAGAGTGTTGAGAACGTCCCTAAACTATATAGGTTTTGTTATTAGTTTTTTTTTTGCATATATGTGCAATGTGGTTTGTGACTTTGTGTTTGTGTTTGTGTTTGTTGTTTTCTATTCTAAAATGAAAAGGTTTCATATGTGCAATAACCCTCTCTTTTTTACCACAATTTATCATATTCCAATTGTAATTTCCAAGAAATAAAAAAGAAAACAAATTATTTTTATGGAAAATCTCAATCTCAAATTCTCATTGGATGACCAATTATGATATGGAACCCAAATCTTTATAATTATT
Coding sequence (CDS)
ATGACTTCCAAGATTGTCTTTCTTCTGGTTCTTGGTGCTTTTCTCTGCACCACTTCTGCGGCTCGTAAGCTGAGTACTGCCTCTCTTCAAGATGAAAAGTTCTTCCACCGTCCTGGATTTGGTGGCGGAGGTGGTGGAGGGTTCGGTGGAGGCGGAGGGTTAGGTGGGGGTTCCGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGCGGCGGTGTTGGTAGTGGTGGCGGTGCTGGAGGAGGGTTTGGTGGAGGAGGAGGTGGTGGAGTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTTGGAGGAGGGGCTGGTGGAGGAGGAGGACTTGGTGGTGGCGCTGGCGGTGGAGGAGGGTTCGGTGGCGGGGGTGGACTAGGGGGCGGAGCAGGCGGAGGGTTCGGTGGTGGCGCCGGTGTAGGAGGTGGATTCCCTTGA
Protein sequence
MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRPGFGGGGGGGFGGGGGLGGGSGGGFGGGSGFGGGVGSGGGAGGGFGGGGGGGVGGGSGFGGGAGFGGGAGGGGGLGGGAGGGGGFGGGGGLGGGAGGGFGGGAGVGGGFP
Homology
BLAST of Clc10G04920 vs. NCBI nr
Match:
KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 115.9 bits (289), Expect = 2.9e-22
Identity = 132/156 (84.62%), Postives = 137/156 (87.82%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRP-----GFGGGGGGGF--GGGGG 60
M SKIVFL+ LGAFL +TS ARKLSTAS QDEKFFHRP G GGGGGGGF GGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGVGSGGGAGGGFGGGGGGGVGGGSGFGGGAGFGGGAGGGGGLG 120
LGGGSGGGFGGGSGFGGGVG G G GGGFGGGGGGG+GGGSGFGGGAGFGGG+GGGGGLG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120
Query: 121 GGAGGGGGF--GGGGGLGGGAGGGFGGGAGVGGGFP 148
GGAGGGGGF GGGGGLGGGAGGGFGGGAG GGG+P
Sbjct: 121 GGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGYP 156
BLAST of Clc10G04920 vs. NCBI nr
Match:
KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 108.2 bits (269), Expect = 6.0e-20
Identity = 134/160 (83.75%), Postives = 138/160 (86.25%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRP-----GFGGGGGGGF--GGGGG 60
M SKIVFL+ LGAFL TTS ARKLSTAS QDEKFFHRP G GGGGGGGF GGGGG
Sbjct: 1 MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGV--GSGGGAGGGFGGGGGGGVGGGSGFGGGAGFGGGAGGGGG 120
LGGGSGGGFGGGSGFGGGV G+GGG GGGFGGGGGGG+GGGSGFGGGAGFGGG+GGGGG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
Query: 121 L--GGGAGGGGGF--GGGGGLGGGAGGGFGGGAGVGGGFP 148
L GGGAGGGGGF GGGGGLGGGAGGGFG GAG GGGFP
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160
BLAST of Clc10G04920 vs. NCBI nr
Match:
XP_011650511.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])
HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 131/158 (82.91%), Postives = 136/158 (86.08%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRP-----GFGGGGGGGF--GGGGG 60
M SKIVFL+ LGAFL +TS ARKLSTAS QDEKFF RP G GGGGGGGF GGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGV--GSGGGAGGGFGGGGGGGVGGGSGFGGGAGFGGGAGGGGG 120
LGGGSGGGFGGGSGFGGGV G+GGG GGGFGGGGGGG+GGGSGFGGGAGFGGG+GGG G
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGLG 120
Query: 121 LGGGAGGGGGF--GGGGGLGGGAGGGFGGGAGVGGGFP 148
GGGAGGGGGF GGGGGLGGGAGGGFGGGAG GGGFP
Sbjct: 121 GGGGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP 158
BLAST of Clc10G04920 vs. NCBI nr
Match:
KAG5002003.1 (hypothetical protein JHK87_023075 [Glycine soja])
HSP 1 Score: 77.4 bits (189), Expect = 1.1e-10
Identity = 118/164 (71.95%), Postives = 128/164 (78.05%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLST--ASLQDEK-FFHRPGFGGGGGGGF--GGGGGLG 60
M S+++ L +LGA +CT ARKL + S +DEK FFHRPGFGGGGGGGF GGGGGLG
Sbjct: 1 MASRVLLLALLGALVCTVIDARKLGSEKGSFRDEKNFFHRPGFGGGGGGGFGGGGGGGLG 60
Query: 61 GGSGGGFGG------GSGFGGGVGSGGGAGGGFGG------GGGGGVGGGSGFGGGAGFG 120
GG+GGG GG G+G G G G+GGGAGGGFGG GGGGGVGGGSGFGGGAGFG
Sbjct: 61 GGAGGGLGGGAGGGFGAGAGAGAGAGGGAGGGFGGGGGGGFGGGGGVGGGSGFGGGAGFG 120
Query: 121 GGAGGGGGLGGGAGGGGGFGGGGGLGGGAGGGFGGGAGVGGGFP 148
GGAG GGGLGGG GGG G GGGGGLGGGAGGGFGGGAG GGGFP
Sbjct: 121 GGAGAGGGLGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP 164
BLAST of Clc10G04920 vs. NCBI nr
Match:
XP_022151305.1 (glycine-rich protein 5 [Momordica charantia])
HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 117/151 (77.48%), Postives = 123/151 (81.46%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRPGFGGGGGGGFGGGGGLGGGSGG 60
M SKI+FL++L AFLCTTS ARKL+T S D+KFFHRPGFGGGGGGG GGGG GGG GG
Sbjct: 1 MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFGGGGGGGGFGGGG-GGGLGG 60
Query: 61 GFGGGSGFGGGV--GSGGGAGGGFGGGGGG-GVGGGSGFGGGAGFGGGAGGGGGL--GGG 120
GFGGGSGFGGG G+GGGAGGGFGGGGGG G GGG G G G GFGGGAG GGGL GGG
Sbjct: 61 GFGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGAGGGFGGGAGAGGGLGGGGG 120
Query: 121 AGGGGGFGGGGGLGGGAGGGFGGGAGVGGGF 147
AGGGGGFGGG G G G G GFGGGAG GGGF
Sbjct: 121 AGGGGGFGGGRGGGLGGGSGFGGGAGAGGGF 150
BLAST of Clc10G04920 vs. ExPASy TrEMBL
Match:
A0A5D3BB90 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002250 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 132/156 (84.62%), Postives = 137/156 (87.82%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRP-----GFGGGGGGGF--GGGGG 60
M SKIVFL+ LGAFL +TS ARKLSTAS QDEKFFHRP G GGGGGGGF GGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGVGSGGGAGGGFGGGGGGGVGGGSGFGGGAGFGGGAGGGGGLG 120
LGGGSGGGFGGGSGFGGGVG G G GGGFGGGGGGG+GGGSGFGGGAGFGGG+GGGGGLG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120
Query: 121 GGAGGGGGF--GGGGGLGGGAGGGFGGGAGVGGGFP 148
GGAGGGGGF GGGGGLGGGAGGGFGGGAG GGG+P
Sbjct: 121 GGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGYP 156
BLAST of Clc10G04920 vs. ExPASy TrEMBL
Match:
A0A5A7VJD1 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001320 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 2.9e-20
Identity = 134/160 (83.75%), Postives = 138/160 (86.25%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRP-----GFGGGGGGGF--GGGGG 60
M SKIVFL+ LGAFL TTS ARKLSTAS QDEKFFHRP G GGGGGGGF GGGGG
Sbjct: 1 MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGV--GSGGGAGGGFGGGGGGGVGGGSGFGGGAGFGGGAGGGGG 120
LGGGSGGGFGGGSGFGGGV G+GGG GGGFGGGGGGG+GGGSGFGGGAGFGGG+GGGGG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120
Query: 121 L--GGGAGGGGGF--GGGGGLGGGAGGGFGGGAGVGGGFP 148
L GGGAGGGGGF GGGGGLGGGAGGGFG GAG GGGFP
Sbjct: 121 LGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP 160
BLAST of Clc10G04920 vs. ExPASy TrEMBL
Match:
A0A0A0L2A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 8.5e-12
Identity = 121/166 (72.89%), Postives = 128/166 (77.11%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRP-----GFGGGGGGGF--GGGGG 60
M SKIVFL+ LGAFL +TS ARKLSTAS QDEKFF RP G GGGGGGGF GGGGG
Sbjct: 1 MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60
Query: 61 LGGGSGGGFGGGSGFGGGV--GSGGGAGGGFGGGGGGGVGGGSGFGGGAGFGGGAG---- 120
LGGGSGGGFGGGSGFGGGV G+GGG GGGFGGGGGGG+GGG+ G GFGGGAG
Sbjct: 61 LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGA----GGGFGGGAGAGDE 120
Query: 121 --------GGGGLGGGAGGGGGFGGGGGLGGGAGGGFGGGAGVGGG 146
GGGGLGGG GGG G GGGGGLGGG+GGGFGGG+G GGG
Sbjct: 121 KFFRRPRFGGGGLGGGGGGGFGGGGGGGLGGGSGGGFGGGSGFGGG 162
BLAST of Clc10G04920 vs. ExPASy TrEMBL
Match:
A0A6J1DAT8 (glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1)
HSP 1 Score: 73.9 bits (180), Expect = 6.1e-10
Identity = 117/151 (77.48%), Postives = 123/151 (81.46%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLSTASLQDEKFFHRPGFGGGGGGGFGGGGGLGGGSGG 60
M SKI+FL++L AFLCTTS ARKL+T S D+KFFHRPGFGGGGGGG GGGG GGG GG
Sbjct: 1 MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFGGGGGGGGFGGGG-GGGLGG 60
Query: 61 GFGGGSGFGGGV--GSGGGAGGGFGGGGGG-GVGGGSGFGGGAGFGGGAGGGGGL--GGG 120
GFGGGSGFGGG G+GGGAGGGFGGGGGG G GGG G G G GFGGGAG GGGL GGG
Sbjct: 61 GFGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGAGGGFGGGAGAGGGLGGGGG 120
Query: 121 AGGGGGFGGGGGLGGGAGGGFGGGAGVGGGF 147
AGGGGGFGGG G G G G GFGGGAG GGGF
Sbjct: 121 AGGGGGFGGGRGGGLGGGSGFGGGAGAGGGF 150
BLAST of Clc10G04920 vs. ExPASy TrEMBL
Match:
K7LA64 (Uncharacterized protein OS=Glycine max OX=3847 GN=100801057 PE=4 SV=1)
HSP 1 Score: 73.2 bits (178), Expect = 1.0e-09
Identity = 118/172 (68.60%), Postives = 127/172 (73.84%), Query Frame = 0
Query: 1 MTSKIVFLLVLGAFLCTTSAARKLST--ASLQDEK-FFHRPGFGGGGGGGFGG------- 60
M S+ + L +LGA +CT ARKL + S +DEK FFHRPGFGGGGGGGFGG
Sbjct: 1 MASRFLLLALLGALVCTVIDARKLGSEKGSFRDEKNFFHRPGFGGGGGGGFGGGGGGGLG 60
Query: 61 ---GGGLGGGSGGGFGGGSGFGGGVGSGGGAGGGFGGGG------GGGVGGGSGFGGGAG 120
GGGLGGG+GGGFG G+G G G G+GGGAGGGFGGGG GGGVGGGSGFGGGAG
Sbjct: 61 GGAGGGLGGGAGGGFGAGAGAGAGAGAGGGAGGGFGGGGGGGFGSGGGVGGGSGFGGGAG 120
Query: 121 FGGGAGGGGGLGGGAGGGGGFGGGGGLGGGAGGGFGG------GAGVGGGFP 148
FGGGAG GGGLGGG GGG G GGGGGLGGGAGGGFGG GAG GGGFP
Sbjct: 121 FGGGAGAGGGLGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGAGAGAGGGFP 172
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0065824.1 | 2.9e-22 | 84.62 | glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96... | [more] |
KAA0065825.1 | 6.0e-20 | 83.75 | glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] | [more] |
XP_011650511.1 | 1.1e-18 | 82.91 | glycine-rich cell wall structural protein-like [Cucumis sativus] | [more] |
KAG5002003.1 | 1.1e-10 | 71.95 | hypothetical protein JHK87_023075 [Glycine soja] | [more] |
XP_022151305.1 | 1.3e-09 | 77.48 | glycine-rich protein 5 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BB90 | 1.4e-22 | 84.62 | Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... | [more] |
A0A5A7VJD1 | 2.9e-20 | 83.75 | Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... | [more] |
A0A0A0L2A7 | 8.5e-12 | 72.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1 | [more] |
A0A6J1DAT8 | 6.1e-10 | 77.48 | glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1 | [more] |
K7LA64 | 1.0e-09 | 68.60 | Uncharacterized protein OS=Glycine max OX=3847 GN=100801057 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |