Clc10G04800 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G04800
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pectin lyase-like superfamily protein, putative
Location	ClcChr10: 5308078 .. 5310748 (+)
RNA-Seq Expression	Clc10G04800
Synteny	Clc10G04800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTGGTGGCCAATCAGATGGAGTAACGGATAACAGCAAGGTAAATTACCCTATATTTATTTTTTTTTTTTAGTGAATTAAAAAAATACAAATGCTTTATTAGTTAATTTAAGTCCGAATAAACATACAACTATACACAAAGCTTTTACTATGATACTATTGACTCCAAAATTAGTGGTTGGATACTCCCTTTTCACATATTGTCAAAAATGAAATAAATGATAAATGCCAATTTATACTCCTAAATTTTGGAGGATGTGTTTAACTAAAATTTCGAACTAATAATTGTATCAATTTAAGCCATGAATTTTCATGAATGTAACGATTTACACCCTCATTTAGATTTCGTTCGACCAATATTTTGTAAAAATTATAATTTAAATAAATTAAACTCTTAAATGTTTATAGGGCAATCAATTTAAACCCTTCATCACGATTACCTTTAAAAACCATCATTGCATTAATTCCCAAAATGTGTGAAGATTTCTTTAAATATTTGTTTTACAAAATGGATGATTAGAGTAAATGCATAGATGATTCTCAAAGTAAATTTTGAATAAATGTCTAAATTCATTCATTTATGAAACCTTTGAGATTTAATTGATACAACTATAAGTTTCACAGAAGGCTTCTCTAAATGGAACGTAATCGAAGGTGTAAAGCGATACAATTATTACTACATGGTTTAAATTAATCCAACACCTAAAGTTTAAGGGTATATTTTTATTTTAAGAAAATTAATATCAATTTAAACTGTTTTTTCCTTTCTAATATTTATATAATATTAACTAGTATAGGGTGGTAGATCTAAAATTTTATGTTAGGAAAGATAACTTTGACGCATTGATATTAATTTGTTTGATAGGAAAGGTGGACAAAATTTTCTTTATAAATGTGTGATATAGAAATAGACAATGGAAAGTAATAAAGTTGGTTTGGTTTTATTTGATGGGTTAGGCTTTGAGTAAGGCATGGTGGAGAGGTTGTGAATATAACAATGGGTCTGCAGTGGTTTTAATACCACAAGGGACATTCTTGATTTTGCCGGTGATGCTTCAAGGTCCATGCAATGGCTCGATTCAGCTGCAAATCGACGGCCAAGTCTTGGCTCCTAGGGACCAGGCTTTCGCAAAAGCTGACCACTGGCTCGTTTCTTGAAGAGATGTAAAAGGAAATCAAGAGAAAATAGAAGGAAGGATTTTTGGAGATTTTGAATGGTGTAAACATATAGTAGAGATTGATTTTACTGAGACGTGCCGAAAACGTCAGGTGGGTGGGGCTCAAAGACAACCTAATTGATGTTGTGTTGTTGTTAGAGGTTGCATCTCGTTGACAAACGCTACTTTTGTTGTCTACTGCAATGTGTCCCTTGGTGTATATAGGATGTGTCTCTTCGATAGATACAATACAATAAATGACAAAAAAAAAATGTCTTATAATTTAGCCAAAAAAATATTTAGGTGCTCACTCGTCTGTACTTAATTCTGTGCATTCTAGGGAGTTGCCCAATAAAAGATTACTATGTGGCAATTTTATATATTTTTTTTAAAAAAATTATTTGTGTATCTAAAAATGGAAACTACAAAGGTTGCACCTAATCATCACTCTTTTTCACGATAGTTTTAGATCCACCAATTTTTTATTATTTCTTTTATACCCACATAAAAAATATATTTTTAAATACACCCATAAGTATGTTCTTTTTTCTTTTTTTTTTTTAGTGCTTGTAGATGGAGAATTTTTGTAATACTTTTTGCATTTACTACTTTTACTTTTTATTTTATTTTTGTAAAAAGAAAGCACAAAACAACGGTGATGATAAGAAATATTGATTCGATTATGTTATATATATAATATTTGATTTTATGCAGACTTTGAAATTTAATTCAATCAATAATGCAACAATAAAGAACATCAAGTCTGTCAATAGCAAGTTCTTCCATTTTGCGGTGTTCAAAAGTCAAAACATCACATTTGACAACGTCACATTTGTAGCTCCAAAAGATAGTCCCAACACTGACGGAATTCACATCTCCATGTCGATTGACATCAACATTATGAATTCAGTGATAAACACTGGAGATGATTGCATTTCCTTGGGCCCTAGAAGTAAAGCCGTCAACATAACCAATATTCAATGTGATCAACACCAAGAATGGTGTCAGAATCAAATCATGGTCGACTCCATTTTCAAGTATGGTTAGCAAGATCACATTCATTAATCTTCAAATGAACAATGTCCAACATCCTATTATTATCGATCAAAGCTATTGCCAGCATCAATCTTGCTATCCTGCCCAAATGGTAAAAATTTGAGATTACTCTATTAGTTTAAAACTTTTGAGTTAATTGATGATTTAATAGATAATATGTTGGCGGGTTACGGTGTAGACTCTAAAGCGAAAATGTTGTTGTGTGATTAATTACAGAGTAGGTCAGGAGTGCAAATTCAAGATGTTAGATATGAAGACATAAGGGCTCCAAGTAGCAAAGTGGCGGTCAATTTTGATTGTAGCCAAGTTACTCCATGCCAAGGCATAGTGTTGCAGGACATTAACATGACTTTGAATAATGGTGGCACTGTGATTTCAAGATGCTATAATGTTAGAGGGTCTGCCTTTGGCTTACAATTACCTCCCTCTTGCCTCTTACCTCTAATTAGTTAG

mRNA sequence

ATGCAATTTGGTGGCCAATCAGATGGAGTAACGGATAACAGCAAGGCTTTGAGTAAGGCATGGTGGAGAGGTTGTGAATATAACAATGGGTCTGCAGTGGTTTTAATACCACAAGGGACATTCTTGATTTTGCCGGTGATGCTTCAAGGTCCATGCAATGGCTCGATTCAGCTGCAAATCGACGGCCAAGTCTTGGCTCCTAGGGACCAGGCTTTCGCAAAAGCTGACCACTGGCTCAGTAGGTCAGGAGTGCAAATTCAAGATGTTAGATATGAAGACATAAGGGCTCCAAGTAGCAAAGTGGCGGTCAATTTTGATTGTAGCCAAGTTACTCCATGCCAAGGCATAGTGTTGCAGGACATTAACATGACTTTGAATAATGGTGGCACTGTGATTTCAAGATGCTATAATGTTAGAGGGTCTGCCTTTGGCTTACAATTACCTCCCTCTTGCCTCTTACCTCTAATTAGTTAG

Coding sequence (CDS)

ATGCAATTTGGTGGCCAATCAGATGGAGTAACGGATAACAGCAAGGCTTTGAGTAAGGCATGGTGGAGAGGTTGTGAATATAACAATGGGTCTGCAGTGGTTTTAATACCACAAGGGACATTCTTGATTTTGCCGGTGATGCTTCAAGGTCCATGCAATGGCTCGATTCAGCTGCAAATCGACGGCCAAGTCTTGGCTCCTAGGGACCAGGCTTTCGCAAAAGCTGACCACTGGCTCAGTAGGTCAGGAGTGCAAATTCAAGATGTTAGATATGAAGACATAAGGGCTCCAAGTAGCAAAGTGGCGGTCAATTTTGATTGTAGCCAAGTTACTCCATGCCAAGGCATAGTGTTGCAGGACATTAACATGACTTTGAATAATGGTGGCACTGTGATTTCAAGATGCTATAATGTTAGAGGGTCTGCCTTTGGCTTACAATTACCTCCCTCTTGCCTCTTACCTCTAATTAGTTAG

Protein sequence

MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQIDGQVLAPRDQAFAKADHWLSRSGVQIQDVRYEDIRAPSSKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRGSAFGLQLPPSCLLPLIS

Homology

[Close]

BLAST of Clc10G04800 vs. NCBI nr
Match: KAG6577493.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-38
Identity = 90/186 (48.39%), Postives = 118/186 (63.44%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           +QFG  +DG TD++KALS+AW   C + NG  +VL+P+G+FL+LP++L+GPC GSI L I
Sbjct: 33  IQFGAIADGKTDSTKALSEAWKGACGH-NGYGIVLVPEGSFLVLPLVLEGPCKGSIGLHI 92

Query: 61  DGQVLAPRDQAFAKADHWL---------------------------------SRSGVQIQ 120
           +G++LAP  + FA  ++WL                                 S S VQI+
Sbjct: 93  NGELLAPVSKNFATGEYWLSISDVDNFFVDGSGSLNGGGSSAWQSDTSNRPISNSKVQIR 152

Query: 121 DVRYEDIRAPS-SKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRGSAFGLQ 153
           DVRYE I+  S S+VAVNF+CSQV PCQGIVLQDIN++L   G   S C NV+GSAFG Q
Sbjct: 153 DVRYEGIKGSSTSQVAVNFECSQVLPCQGIVLQDINLSLKGDGEPTSICDNVKGSAFGKQ 212

[Close]

BLAST of Clc10G04800 vs. NCBI nr
Match: KAG6577489.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           MQFG ++DG TD+++ALSKAW + C  + GS VVL+P G FLI  ++L+GPC GSI L+I
Sbjct: 32  MQFGARNDGRTDSTQALSKAWSQACSRDGGS-VVLVPDGRFLIFSLVLKGPCKGSIGLRI 91

Query: 61  DGQVLAPRDQAFAKADHWL---------------------------------SRSGVQIQ 120
           +G++LAP D  FA    WL                                 S S V+I+
Sbjct: 92  NGELLAPIDPNFAVGQIWLSINEVDNLFVDGYGSLNGRGSLAWSIKKFNRPISNSRVKIR 151

Query: 121 DVRYEDIRAPS-SKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRGSAFGLQ 153
           DVRYE+IR  S ++VAVNF+CSQV PC+GIVLQDIN++ N  G + S C NV+G AFG Q
Sbjct: 152 DVRYENIRGTSATQVAVNFECSQVLPCEGIVLQDINLSFNGRGQLTSICQNVKGHAFGKQ 211

[Close]

BLAST of Clc10G04800 vs. NCBI nr
Match: KAG6577488.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 88/186 (47.31%), Postives = 115/186 (61.83%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           MQFG ++DG TD+++ALS AW + C + +G  VVL+P G FLI  ++ +GPCNGSI L+I
Sbjct: 1   MQFGARNDGRTDSTQALSTAWSQACSH-DGGGVVLVPDGRFLISSLVFKGPCNGSIGLRI 60

Query: 61  DGQVLAPRDQAFAKADHWL---------------------------------SRSGVQIQ 120
           +G++LAP D  FA A  WL                                 S S V+I+
Sbjct: 61  NGELLAPIDPNFAIAQIWLSIYEVDNLFVDGYGSLNGRGSLAWSIKKFNRPISNSRVKIR 120

Query: 121 DVRYEDIRAPS-SKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRGSAFGLQ 153
           D RYE+IR  S ++ AVNF+CSQV PC+GIVLQDIN++ N  G   S C+NV+GSAFG Q
Sbjct: 121 DARYENIRGTSATQAAVNFECSQVLPCEGIVLQDINLSFNGRGQPTSICHNVKGSAFGKQ 180

[Close]

BLAST of Clc10G04800 vs. NCBI nr
Match: KAG6577492.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-35
Identity = 85/186 (45.70%), Postives = 113/186 (60.75%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           +QFG  +DG TD+++ALS+AW   C + NG  +VL+P G+FL+LP++L+GPC GSI L I
Sbjct: 29  IQFGATADGKTDSTEALSRAWKEACGH-NGHGIVLVPAGSFLVLPLVLEGPCKGSIGLLI 88

Query: 61  DGQVLAPRDQAFAKADHWL---------------------------------SRSGVQIQ 120
           +G++LAP  + FA   +WL                                 S S VQI+
Sbjct: 89  NGKLLAPVSKNFAIGKYWLSISKVDNFFVNGSGSLNGGGSSAWHSDTSNRPISNSKVQIK 148

Query: 121 DVRYEDIRAPS-SKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRGSAFGLQ 153
           DVRYE IR  S S+ AV+F+CSQV  C+ IVLQDIN++    G   S C+NV+GSAFG Q
Sbjct: 149 DVRYEGIRGSSTSQAAVSFECSQVCSCESIVLQDINLSYKGDGEPTSICHNVKGSAFGKQ 208

[Close]

BLAST of Clc10G04800 vs. NCBI nr
Match: KAG6577490.1 (Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 6.6e-33
Identity = 85/186 (45.70%), Postives = 109/186 (58.60%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           +QFG  +DG T+++KALS+AW   C + NG  VVL+P G FLILP++L+GPC  SI L I
Sbjct: 26  IQFGATADGKTESTKALSEAWREACGH-NGHGVVLVPAGRFLILPLVLEGPCKVSIGLLI 85

Query: 61  DGQVLAPRDQAFAKADHWL---------------------------------SRSGVQIQ 120
            G++LAP  + FA   +WL                                 S S VQI+
Sbjct: 86  HGELLAPVSKNFATGGYWLSISKVDNLFVDGSGSLNGGGSSAWPSDTSNRPVSNSKVQIR 145

Query: 121 DVRYEDIRAPS-SKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRGSAFGLQ 153
           DVRYE IR  S S+VAV+F+CSQV  C+ IVLQDIN++    G   S C+NV+GSA G Q
Sbjct: 146 DVRYEGIRGSSTSQVAVSFECSQVCSCESIVLQDINLSYKGDGQPTSICHNVQGSASGKQ 205

[Close]

BLAST of Clc10G04800 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-10
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2   QFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQID 61
           +FG ++DG TD SK    AW   C     S VV IP+GT+L+  V L+GPC   I++ + 
Sbjct: 34  KFGAKADGKTDLSKPFLDAWKEACASVTPSTVV-IPKGTYLLSKVNLEGPCKAPIEINVQ 93

Query: 62  GQVLAPRDQAFAKADHWL 80
           G + AP D +  K  +W+
Sbjct: 94  GTIQAPADPSAFKDPNWV 110

[Close]

BLAST of Clc10G04800 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.8e-10
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2   QFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQID 61
           +FG ++DG TD SK    AW   C     S VV IP+GT+L+  V L+GPC   I++ + 
Sbjct: 34  KFGAKADGKTDLSKPFLDAWKEACASVTPSTVV-IPKGTYLLSKVNLEGPCKAPIEINVQ 93

Query: 62  GQVLAPRDQAFAKADHWL 80
           G + AP D +  K  +W+
Sbjct: 94  GTIQAPADPSAFKDPNWV 110

[Close]

BLAST of Clc10G04800 vs. ExPASy Swiss-Prot
Match: P48978 (Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.2e-10
Identity = 45/163 (27.61%), Postives = 74/163 (45.40%), Query Frame = 0


Query: 3   FGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQIDG 62
           FG + +G  D+++A  KAW   C  ++G+ V+++PQ  +L+ P+   GPC   + LQI G
Sbjct: 104 FGAKGNG-ADDTQAFVKAWKAACS-SSGAMVLVVPQKNYLVRPIEFSGPCKSQLTLQIYG 163

Query: 63  QVLAPRDQAFAK-ADHWLSRSGVQ-IQDVRYEDIRA-------PSSKVAVNFDCSQVTP- 122
            + A  D++  K  DHWL    VQ +  V    I          S K+     C    P 
Sbjct: 164 TIEASEDRSIYKDIDHWLIFDNVQNLLVVGPGTINGNGNIWWKNSCKIKPQPPCGTYAPT 223

Query: 123 ------CQGIVLQDINM-TLNNGGTVISRCYNVRGSAFGLQLP 149
                 C  +V++++N+        +   C NV+ S   +  P
Sbjct: 224 AVTFNRCNNLVVKNLNIQDAQQIHVIFQNCINVQASCLTVTAP 264

[Close]

BLAST of Clc10G04800 vs. ExPASy Swiss-Prot
Match: P35336 (Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-09
Identity = 32/85 (37.65%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 3   FGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQIDG 62
           FG + DG  D++KA  KAW   C  +  SAV+L+P+  +L+ P+   GPC   + +QI G
Sbjct: 95  FGAKGDG-RDDTKAFEKAWKAACS-STSSAVLLVPKKNYLVRPISFSGPCKSGLTMQIYG 154

Query: 63  QVLAPRDQAFAKAD--HWLSRSGVQ 86
            + A  D++  + D  HWL    VQ
Sbjct: 155 TIEASDDRSDYRKDGRHWLVFDSVQ 177

HSP 2 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 82  SGVQIQDVRYEDIRAP-SSKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRG 141
           S VQ+++V Y++I+   +S VA+ FDCS+  PCQGIVL+D+++ +  G    + C NV  
Sbjct: 386 SAVQVKNVVYQNIKGTCASNVAITFDCSKRFPCQGIVLEDVDLEIEGGAAAKALCNNVEL 445

Query: 142 SAFGLQLP 149
           S  G+  P
Sbjct: 446 SETGVVSP 453

[Close]

BLAST of Clc10G04800 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-09
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 2   QFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQID 61
           + G   +G TD++KA+ +AW   C    G   +LIP+G FL+ P+   GPC G + +Q++
Sbjct: 45  KLGASGNGKTDSTKAVQEAWASACG-GTGKQTILIPKGDFLVGPLNFTGPCKGDVTIQVN 104

Query: 62  GQVLAPRDQAFAKADH 78
           G +LA  D +  K DH
Sbjct: 105 GNLLATTDLSQYK-DH 118

[Close]

BLAST of Clc10G04800 vs. ExPASy TrEMBL
Match: A0A7J0G3X9 (Pectate_lyase_3 domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_17g0010650 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.2e-25
Identity = 71/193 (36.79%), Postives = 94/193 (48.70%), Query Frame = 0


Query: 3   FGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQIDG 62
           +G  +DG TDNS A SKAW + C +  G +VV IP+GT+++  V+ +GPC+G I   I G
Sbjct: 42  YGAVADGKTDNSMAFSKAWTKACGWKYGKSVVFIPKGTYMVNSVIFRGPCSGPITFIIKG 101

Query: 63  QVLAPRDQAFAKADHWLS-----------------------------------------R 122
            + AP D      DHW+                                           
Sbjct: 102 VLKAPTDPKLFFTDHWIGFQYVDGLVVKGGGYLDGQGPSAWPYNDCSTNPNCKPLPTAYN 161

Query: 123 SGVQIQDVRYEDI-RAPSSKVAVNFDCSQVTPCQGIVLQDINMTLNN-GGTVISRCYNVR 153
           S VQI +V +++I    SSKVAVN  CS + PCQ I L +IN++ N  GG  IS C NVR
Sbjct: 162 SEVQISNVTFKNIWGTSSSKVAVNIKCSGIAPCQNIKLVNINLSYNGLGGPAISSCSNVR 221

[Close]

BLAST of Clc10G04800 vs. ExPASy TrEMBL
Match: A0A0A0L7H9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063610 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.9e-24
Identity = 97/361 (26.87%), Postives = 121/361 (33.52%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIP-QGTFLILPVMLQGPCNGSIQLQ 60
           M FG + D +TDNSKALS AW   C  NNG  +VLIP +G FL+LP++LQGPC+G I++Q
Sbjct: 1   MHFGAKPDAITDNSKALSSAWSEACT-NNGGGIVLIPAKGRFLVLPLLLQGPCHGFIRIQ 60

Query: 61  IDGQVLAPRDQAFAKADHWL---------------------------------------- 120
           +DG++LAP D+ FA  D+WL                                        
Sbjct: 61  LDGELLAPLDEHFATGDYWLSIDQVNNLFIDGLGSLDGRGSTAWPSTSHNRPVSMRLNGI 120

Query: 121 ------------------------------------------------------------ 153
                                                                       
Sbjct: 121 NNARITNIKSYNSKLFHFAMHGCRDVTFDHVTVIAPANSPNTDGIHISSSSGINIMHSTI 180

[Close]

BLAST of Clc10G04800 vs. ExPASy TrEMBL
Match: A0A5D3B9J1 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001860 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 98/358 (27.37%), Postives = 119/358 (33.24%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQ-GTFLILPVMLQGPCNGSIQLQ 60
           MQFG + D +TDNSKALS AW   C  NNG  VVLIP  G FL+LP++LQGPC+G I +Q
Sbjct: 1   MQFGAKPDAITDNSKALSTAWSEACT-NNGGGVVLIPALGRFLVLPLLLQGPCHGFIHIQ 60

Query: 61  IDGQVLAP---------------------------------------------------- 120
           +DG++LAP                                                    
Sbjct: 61  LDGELLAPLNENTGDYWLSIDKVNNLFIDGLGRLNGRGSTAWPSASHNRPISMKLTGINN 120

Query: 121 ------------------------------------------------------------ 153
                                                                       
Sbjct: 121 ARISNIKSYNSKLFHFAVHGCRDVTFDHVTVIAPANSPNTDGIHVSLSSGINIMHSTIGT 180

[Close]

BLAST of Clc10G04800 vs. ExPASy TrEMBL
Match: A0A1S4DX91 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491147 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 3.7e-21
Identity = 98/358 (27.37%), Postives = 119/358 (33.24%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQ-GTFLILPVMLQGPCNGSIQLQ 60
           MQFG + D +TDNSKALS AW   C  NNG  VVLIP  G FL+LP++LQGPC+G I +Q
Sbjct: 1   MQFGAKPDAITDNSKALSTAWSEACT-NNGGGVVLIPALGRFLVLPLLLQGPCHGFIHIQ 60

Query: 61  IDGQVLAP---------------------------------------------------- 120
           +DG++LAP                                                    
Sbjct: 61  LDGELLAPLNENTGDYWLSIDKVNNLFIDGLGRLNGRGSTAWPSASHNRPISMKLTGINN 120

Query: 121 ------------------------------------------------------------ 153
                                                                       
Sbjct: 121 ARISNIKSYNSKLFHFAVHGCRDVTFDHVTVIAPANSPNTDGIHVSLSSGINIMHSTIGT 180

[Close]

BLAST of Clc10G04800 vs. ExPASy TrEMBL
Match: A0A4D9BXA5 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_029599 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20
Identity = 64/160 (40.00%), Postives = 88/160 (55.00%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           +++G  SDG TDNS+A  KAW   C Y NG     IP G FL+     +G CNGS+   I
Sbjct: 30  VRYGAISDGTTDNSQAFLKAWKDSCAY-NGRRRFWIPNGKFLLRKASFEGLCNGSMAFLI 89

Query: 61  DGQVLAPRDQAFAKADHWL------SRSGVQIQDVRYEDIRAPSS-KVAVNFDCSQVTPC 120
            G ++AP D  F   D W+      S S VQIQDV +++I   SS +VAVN  CS+  PC
Sbjct: 90  KGTLVAPTDSFF--TDTWIAFRYGHSSSAVQIQDVTFKNIFGVSSTEVAVNLQCSKAMPC 149

Query: 121 QGIVLQDINMTLNN-GGTVISRCYNVRGSAFGLQLPPSCL 153
           + + L +I++  +  G    S C NV  S+ G  +P  C+
Sbjct: 150 KNVKLINIDLAYDGPGRRATSLCSNVIASSSGKLVPGGCI 186

[Close]

BLAST of Clc10G04800 vs. TAIR 10
Match: AT1G05660.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 3.1e-12
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           + FG + DGVTD++ A  KAW   C  +  SA V++P+GTFL+  +   GPC   I  Q+
Sbjct: 31  VSFGAKPDGVTDSTGAFLKAWQGAC-VSASSATVVVPKGTFLLKVITFGGPCKSKITFQV 90

Query: 61  DGQVLAPRD-QAFAKADHWL 80
            G V+AP D + F  +  W+
Sbjct: 91  AGTVIAPEDYRTFGNSGFWI 109

HSP 2 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 82  SGVQIQDVRYEDIRAPS-SKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRG 141
           SGV+I  V Y++I+  S ++ A+   CS+ +PC GI LQDI +T N G    S C+N  G
Sbjct: 321 SGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVG 380

Query: 142 SAFGLQLPPSCL 153
            + G+  P SCL
Sbjct: 381 KSLGVIQPTSCL 392

[Close]

BLAST of Clc10G04800 vs. TAIR 10
Match: AT1G05650.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.3e-12
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           + FG + DGVTD++ A  KAW   C  +  SA V++P GTFL+  +   GPC   I  Q+
Sbjct: 31  VSFGAKPDGVTDSTAAFLKAWQGACG-SAASATVVVPTGTFLLKVITFGGPCKSKITFQV 90

Query: 61  DGQVLAPRD-QAFAKADHWL 80
            G V+AP D + F  +  W+
Sbjct: 91  TGTVVAPEDYRTFGNSGSWI 109

HSP 2 Score: 61.6 bits (148), Expect = 6.4e-10
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 82  SGVQIQDVRYEDIRAPS-SKVAVNFDCSQVTPCQGIVLQDINMTLNNGGTVISRCYNVRG 141
           SGV+I  V Y++I+  S ++ A+   CS+  PC GI LQDI +T N G    S C+N  G
Sbjct: 321 SGVKITQVTYKNIQGTSATQEAMKLVCSKSNPCTGITLQDIKLTYNKGTPATSLCFNAVG 380

Query: 142 SAFGLQLPPSCL 153
              G+  P SCL
Sbjct: 381 KNLGVIQPTSCL 392

[Close]

BLAST of Clc10G04800 vs. TAIR 10
Match: AT5G44840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQG-TFLILPVMLQGPCNG-SIQL 60
           ++FG   +G+TD+SKA  KAW   C     S   +IP   TFL+ P+  QGPC   S+Q+
Sbjct: 27  LEFGADGNGITDDSKAFVKAWSAMCGSGGNSKTFIIPSNKTFLLQPLTFQGPCKSPSVQV 86

Query: 61  QIDGQVLAPRDQAFAKADHWLSR 82
           + DG+++AP ++A A +D+ L R
Sbjct: 87  KFDGKIVAPINKA-AWSDYKLFR 108

[Close]

BLAST of Clc10G04800 vs. TAIR 10
Match: AT1G17150.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 9.9e-11
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 3   FGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQIDG 62
           +G + DG  DN+ A + AW   C + NG + + IP GTF +  V   GPC+G I   IDG
Sbjct: 38  YGAKGDGKMDNTNAFTNAWKDACRW-NGPSKMYIPLGTFYLGGVTFVGPCDGKISFVIDG 97

Query: 63  QVLAPRDQAFAKADHWLS 81
            +LAP +    K + W++
Sbjct: 98  TLLAPPNNDDIKKEIWIN 114

[Close]

BLAST of Clc10G04800 vs. TAIR 10
Match: AT2G43890.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 9.9e-11
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1   MQFGGQSDGVTDNSKALSKAWWRGCEYNNGSAVVLIPQGTFLILPVMLQGPCNGSIQLQI 60
           + FG + DG TD++KA   AW   C  +  +  V +P+G+FL+ PV  +GPC   I  QI
Sbjct: 32  VSFGAKPDGRTDSTKAFLGAWQAACR-SAAAVTVTVPRGSFLLKPVEFRGPCRSRITFQI 91

Query: 61  DGQVLAPRD-QAFAKADHWL 80
            G ++AP D +    + +W+
Sbjct: 92  YGTIVAPSDYRGLGNSGYWI 110

The following BLAST results are available for this feature:

BLAST of Clc10G04800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577493.1	1.8e-38	48.39	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6577489.1	1.3e-36	47.85	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6577488.1	1.7e-36	47.31	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6577492.1	5.4e-35	45.70	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6577490.1	6.6e-33	45.70	Exopolygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc10G04800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39766	4.8e-10	39.74	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	4.8e-10	39.74	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
P48978	8.2e-10	27.61	Polygalacturonase OS=Malus domestica OX=3750 PE=2 SV=1	[more]
P35336	3.1e-09	37.65	Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1	[more]
P35339	5.3e-09	38.16	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]

BLAST of Clc10G04800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0G3X9	3.2e-25	36.79	Pectate_lyase_3 domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_17g...	[more]
A0A0A0L7H9	7.9e-24	26.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G063610 PE=3 SV=1	[more]
A0A5D3B9J1	3.7e-21	27.37	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S4DX91	3.7e-21	27.37	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491147 PE=3 SV=1	[more]
A0A4D9BXA5	2.4e-20	40.00	Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_029599 PE=3 SV=1	[more]

BLAST of Clc10G04800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05660.1	3.1e-12	40.00	Pectin lyase-like superfamily protein	[more]
AT1G05650.1	5.3e-12	40.00	Pectin lyase-like superfamily protein	[more]
AT5G44840.1	2.6e-11	40.96	Pectin lyase-like superfamily protein	[more]
AT1G17150.1	9.9e-11	38.46	Pectin lyase-like superfamily protein	[more]
AT2G43890.1	9.9e-11	36.25	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 78..147 e-value: 7.9E-10 score: 40.2
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 1..77 e-value: 1.5E-12 score: 49.2
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 81..139 e-value: 1.4E-6 score: 27.6
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 83..151 coord: 1..80
None	No IPR available	PANTHER	PTHR31375:SF147	EXOPOLYGALACTURONASE-LIKE	coord: 83..151 coord: 1..80
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 77..153
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 2..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G04800.2	Clc10G04800.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity