Clc10G04680 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G04680
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	ClcChr10: 5177781 .. 5180192 (+)
RNA-Seq Expression	Clc10G04680
Synteny	Clc10G04680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCAGATCTTGGCAAGCTCTTCATTGGCGGAATTTCGTGGGATACTGATGAAGAGCGTCTTAGGGAATATTTTGGCAACTATGGCGAAGTGGTCGAGGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGCTGTTGCCGAGCGAGTCATTTTGGAGAAGCACGTCATCGATGGTCGAACTGTGAGAATTTCTTCCTTTTTTTCTTTAATCATACATTTCAACATCTGATTTCTGTTCTTGGTGACTTTCCTTAGATTGAATCTGATTCTGCCTAAATTTAGATGTAAATGTGTTGTGTGGATGCAATTTATATGACTTGAGCAGCTGAGTTCTCTTCTGGATTATGCCAAATTCCGTGTTGTTTTCTTGTTAAATGTAGTCACTTTCAATTTTCAGGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAATAGTGGTAGCATTCATGGTTCTCCTAGCTCGGGACGAACAAAAAAGATTTTCGTTGGAGGTTTAGCTTCGACAGTCACTGAGGCTGACTTTCAGAAGTATTTTGATCAGTTTGGAACAATCACTGATGTTGTTGTTATGTATGATCACAGCACCCAAAGGCCAAGGGGTTTTGGCTTCATTACTTATGACTCGGAGGAGTCTGTTGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGAGCAATCCCGAAAGAGCTAACCCCAGGGCCCAACCGGAGCCCTCTTGTAGGATATAACTATGGTATGAGTAGGCCTAGTGGTTTTCTTAACAGCTATACTCAAAGCTATAATATGAGTCCTTTGGGAAGTTATGGAGTCCGGGCAGATGGTAGGTTGAGTCCAATAATTAGCAGTCGAACTGGGGTTCCTCATTTTGGTACTGCTAATTATGGAGTGGGTGTGAATTTGGAGCAAGGGATGAGACAAGGCTATGGCAGGACTTTGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAATTCCTATTATAATGGCAATTCAAATAGGTACATTGCCCCGATTGGCTACAGCGGGGGCAATGGAAGAGGCGATTCCCCCTTAAGCTCAAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACCGCCATGAACTCTTCCGGCCCTGGCACTTTCTCTGGCTCTGGAACGGGGAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAGTTTGCCTGCTGTTGTTAATCATGTTGGAGGGCATGCTCCTGGCTATACTAATAATGGTTATGCAATTGGAGACAATGAGCTCGGGTTCAGAGGAGGCTATGGAAGAAATGGAGTAGTCTCGAATGTGGCAACACGAAAAGCATTTGTTGAAACGACCAATGGTTATGAGAGGTCATATAGGGATTTGTATCGTGATGAAGTGGTGCATGATGATTCGACTTGGCAGTCTGCTGCTCCTGAACTGGATGGTTCTGTGTCTTTTGGTTATGGTCTTGGTAACCTTGCTTCAGATGATCCAGCCAAGAGTTCCGAGAGTTTTCTTGCAAGTTATGATGTTTCAAGCAGACAATCAACTAGAGGTAAACACACTTTACTTTGTTTTATTTATAGCCTTCATTAAAAACACTCATTAACTTGCATACCATTTTGTTTTAGACTAAATACTCGCATTCTCGGTAACTAGTACGATCTGTGATCAACTACAAACAATAAGAAAGAAGTTTATGATTCTAAAATTGAGACGATAACTGAATTGCAATCTCGTGGTTGTTTAAGGAATAGCAAGAAATGCTGCCTTGAAAACTCTGAATATACATGAAATTTGAACCATATGGTATCTTACTGTTGTTAACAGGAATTGCTGCGTAGAAAGATTGTTTGTTGTTTGGATTTTCCAACATGAATTGGAGGAGTTTGAATATAATGCAATGAATCAAACACATGCAGAAGGATTCGGATTCGTGATTTTTATACCGCTCGTTCAGTTGATGAGCTAAAAAAAAGAAAAAAAGAAAGGGAACACTGATCTCATAACTTTTGACTTGGTTCCTCGATCAGAAGGCGATACATATCATCATATATATAGATTTTGAAAGAAGAAAGGTGACAACCGAAATCGAGCACTGTAATTTTTCTTTTGCAATTGCGTCTTTTCTTTTTGTTTTGGTTAACAAGACATAGGCTTGTTTCTTGGGATTTGATTGAGATGTAAAACCAGATTGGCAGATAGAGAGATACTCCAGAAGAAGAGTGATATTTTCAATTATTTTTATCATGCATTCCATATCCAGTGAGGCATGGCAGTAGTAATATCATTAAAAGAGAAAACAGATGATTTTTTCTTTTTCTTTTTTTTTTT

mRNA sequence

ATGGAATCAGATCTTGGCAAGCTCTTCATTGGCGGAATTTCGTGGGATACTGATGAAGAGCGTCTTAGGGAATATTTTGGCAACTATGGCGAAGTGGTCGAGGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGCTGTTGCCGAGCGAGTCATTTTGGAGAAGCACGTCATCGATGGTCGAACTCTGAGTTCTCTTCTGGATTATGCCAAATTCCGTGTTGTTTTCTTGTTAAATGTAGTCACTTTCAATTTTCAGGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAATAGTGGTAGCATTCATGGTTCTCCTAGCTCGGGACGAACAAAAAAGATTTTCGTTGGAGGTTTAGCTTCGACAGTCACTGAGGCTGACTTTCAGAAGTATTTTGATCAGTTTGGAACAATCACTGATGTTGTTGTTATGTATGATCACAGCACCCAAAGGCCAAGGGGTTTTGGCTTCATTACTTATGACTCGGAGGAGTCTGTTGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGAGCAATCCCGAAAGAGCTAACCCCAGGGCCCAACCGGAGCCCTCTTGTAGGATATAACTATGGTATGAGTAGGCCTAGTGGTTTTCTTAACAGCTATACTCAAAGCTATAATATGAGTCCTTTGGGAAGTTATGGAGTCCGGGCAGATGGTAGGTTGAGTCCAATAATTAGCAGTCGAACTGGGGTTCCTCATTTTGGTACTGCTAATTATGGAGTGGGTGTGAATTTGGAGCAAGGGATGAGACAAGGCTATGGCAGGACTTTGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAATTCCTATTATAATGGCAATTCAAATAGGTACATTGCCCCGATTGGCTACAGCGGGGGCAATGGAAGAGGCGATTCCCCCTTAAGCTCAAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACCGCCATGAACTCTTCCGGCCCTGGCACTTTCTCTGGCTCTGGAACGGGGAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAGTTTGCCTGCTGTTGTTAATCATGTTGGAGGGCATGCTCCTGGCTATACTAATAATGGTTATGCAATTGGAGACAATGAGCTCGGGTTCAGAGGAGGCTATGGAAGAAATGGAGTAGTCTCGAATGTGGCAACACGAAAAGCATTTGTTGAAACGACCAATGGTTATGAGAGGTCATATAGGGATTTGTATCGTGATGAAGTGGTGCATGATGATTCGACTTGGCAGTCTGCTGCTCCTGAACTGGATGGTTCTGTGTCTTTTGGTTATGGTCTTGGTAACCTTGCTTCAGATGATCCAGCCAAGAGTTCCGAGAGTTTTCTTGCAAGTTATGATGTTTCAAGCAGACAATCAACTAGAGGAATTGCTGCGTAGAAAGATTGTTTGTTGTTTGGATTTTCCAACATGAATTGGAGGAGTTTGAATATAATGCAATGAATCAAACACATGCAGAAGGATTCGGATTCGTGATTTTTATACCGCTCGTTCAGTTGATGAGCTAAAAAAAAGAAAAAAAGAAAGGGAACACTGATCTCATAACTTTTGACTTGGTTCCTCGATCAGAAGGCGATACATATCATCATATATATAGATTTTGAAAGAAGAAAGGTGACAACCGAAATCGAGCACTGTAATTTTTCTTTTGCAATTGCGTCTTTTCTTTTTGTTTTGGTTAACAAGACATAGGCTTGTTTCTTGGGATTTGATTGAGATGTAAAACCAGATTGGCAGATAGAGAGATACTCCAGAAGAAGAGTGATATTTTCAATTATTTTTATCATGCATTCCATATCCAGTGAGGCATGGCAGTAGTAATATCATTAAAAGAGAAAACAGATGATTTTTTCTTTTTCTTTTTTTTTTT

Coding sequence (CDS)

ATGGAATCAGATCTTGGCAAGCTCTTCATTGGCGGAATTTCGTGGGATACTGATGAAGAGCGTCTTAGGGAATATTTTGGCAACTATGGCGAAGTGGTCGAGGCTGTGATCATGAGGGATCGCACCACTGGTCGTGCTCGTGGCTTTGGCTTTGTTGTCTTTGCAGATCCTGCTGTTGCCGAGCGAGTCATTTTGGAGAAGCACGTCATCGATGGTCGAACTCTGAGTTCTCTTCTGGATTATGCCAAATTCCGTGTTGTTTTCTTGTTAAATGTAGTCACTTTCAATTTTCAGGTTGAAGCTAAAAAGGCTGTTCCAAAGGATGATCAGAACATGTTGAATAGAAATAGTGGTAGCATTCATGGTTCTCCTAGCTCGGGACGAACAAAAAAGATTTTCGTTGGAGGTTTAGCTTCGACAGTCACTGAGGCTGACTTTCAGAAGTATTTTGATCAGTTTGGAACAATCACTGATGTTGTTGTTATGTATGATCACAGCACCCAAAGGCCAAGGGGTTTTGGCTTCATTACTTATGACTCGGAGGAGTCTGTTGACCGTGTGCTGCATAAAACCTTTCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGAGCAATCCCGAAAGAGCTAACCCCAGGGCCCAACCGGAGCCCTCTTGTAGGATATAACTATGGTATGAGTAGGCCTAGTGGTTTTCTTAACAGCTATACTCAAAGCTATAATATGAGTCCTTTGGGAAGTTATGGAGTCCGGGCAGATGGTAGGTTGAGTCCAATAATTAGCAGTCGAACTGGGGTTCCTCATTTTGGTACTGCTAATTATGGAGTGGGTGTGAATTTGGAGCAAGGGATGAGACAAGGCTATGGCAGGACTTTGAACATTATGAATAGTCAAGCACAGGAACAAATGTTGAATTCCTATTATAATGGCAATTCAAATAGGTACATTGCCCCGATTGGCTACAGCGGGGGCAATGGAAGAGGCGATTCCCCCTTAAGCTCAAGTACGTGGAATGTCTGGGGAAATGGAAGTATGAGCACCGCCATGAACTCTTCCGGCCCTGGCACTTTCTCTGGCTCTGGAACGGGGAACTTCAGAGTGGCATATGGAAATAACGATGATAATTGGAGTTTGCCTGCTGTTGTTAATCATGTTGGAGGGCATGCTCCTGGCTATACTAATAATGGTTATGCAATTGGAGACAATGAGCTCGGGTTCAGAGGAGGCTATGGAAGAAATGGAGTAGTCTCGAATGTGGCAACACGAAAAGCATTTGTTGAAACGACCAATGGTTATGAGAGGTCATATAGGGATTTGTATCGTGATGAAGTGGTGCATGATGATTCGACTTGGCAGTCTGCTGCTCCTGAACTGGATGGTTCTGTGTCTTTTGGTTATGGTCTTGGTAACCTTGCTTCAGATGATCCAGCCAAGAGTTCCGAGAGTTTTCTTGCAAGTTATGATGTTTCAAGCAGACAATCAACTAGAGGAATTGCTGCGTAG

Protein sequence

MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSIHGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQEQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGSGTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYTNNGYAIGDNELGFRGGYGRNGVVSNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA

Homology

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BLAST of Clc10G04680 vs. NCBI nr
Match: XP_038904623.1 (heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida] >XP_038904624.1 heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida] >XP_038904625.1 heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida] >XP_038904626.1 heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida] >XP_038904627.1 heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida])

HSP 1 Score: 915.2 bits (2364), Expect = 2.4e-262
Identity = 465/503 (92.45%), Postives = 468/503 (93.04%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVILEKHVIDGRT                        VEAKKAVPKDDQNMLNRNSGSI
Sbjct: 61  ERVILEKHVIDGRT------------------------VEAKKAVPKDDQNMLNRNSGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           E+SVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQ Y
Sbjct: 181 EDSVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ
Sbjct: 241 NMSPLGGYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS
Sbjct: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT---NNGYAIGDNELGFRGGYGRNGVVS 420
           G GNFRVAYGNNDDNWSLPAV NHVGG+ PGYT   NNGYAIGDN  GFRGGYGRNGVVS
Sbjct: 361 GMGNFRVAYGNNDDNWSLPAVANHVGGNVPGYTCGNNNGYAIGDNGFGFRGGYGRNGVVS 420

Query: 421 NVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPA 480
           NVATRKAFVETTNGYERSYRDLYRDE VHD+STWQSAAPELDGSVSFGYGLGNLASDDPA
Sbjct: 421 NVATRKAFVETTNGYERSYRDLYRDEAVHDESTWQSAAPELDGSVSFGYGLGNLASDDPA 479

Query: 481 KSSESFLASYDVSSRQSTRGIAA 501
           KSSESFLASYDVSSRQSTRGIAA
Sbjct: 481 KSSESFLASYDVSSRQSTRGIAA 479

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BLAST of Clc10G04680 vs. NCBI nr
Match: XP_008449083.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >KAA0065786.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa] >TYJ96525.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 892.1 bits (2304), Expect = 2.2e-255
Identity = 454/504 (90.08%), Postives = 459/504 (91.07%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFG YGEVVEAVIMRDRTTGRARGFGFVVFADP VA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGQYGEVVEAVIMRDRTTGRARGFGFVVFADPGVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVIL+KHVIDGRT                        VEAKKAVPKDDQNMLNRNSGSI
Sbjct: 61  ERVILDKHVIDGRT------------------------VEAKKAVPKDDQNMLNRNSGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSP SGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPGSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE VDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQ Y
Sbjct: 181 EECVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVR DGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLN+MNSQAQ
Sbjct: 241 NMSPLGGYGVRPDGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNVMNSQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS AM+SSGPGTFSGS
Sbjct: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSNAMSSSGPGTFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT---NNGYAIGDNE-LGFRGGYGRNGVV 420
           GTGNFRVAYGNNDDNW+ PAV NHVG + PGYT   NNGYAIGDN   GFRGGYGRNGVV
Sbjct: 361 GTGNFRVAYGNNDDNWNSPAVANHVGANVPGYTFGNNNGYAIGDNNGFGFRGGYGRNGVV 420

Query: 421 SNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDP 480
           SNVA RKAFVET NGYERSYRDLYRDEVVHDDSTWQS APELDGSVSFGYGLGNLASDDP
Sbjct: 421 SNVAARKAFVETNNGYERSYRDLYRDEVVHDDSTWQSTAPELDGSVSFGYGLGNLASDDP 480

Query: 481 AKSSESFLASYDVSSRQSTRGIAA 501
           AKSSESFLASYDVSSRQSTRGIAA
Sbjct: 481 AKSSESFLASYDVSSRQSTRGIAA 480

[Close]

BLAST of Clc10G04680 vs. NCBI nr
Match: XP_004149577.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN56055.1 hypothetical protein Csa_009945 [Cucumis sativus])

HSP 1 Score: 887.9 bits (2293), Expect = 4.1e-254
Identity = 453/504 (89.88%), Postives = 458/504 (90.87%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFG+YGEVVEAVIMRDRTTGRARGFGFVVFADP VA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGHYGEVVEAVIMRDRTTGRARGFGFVVFADPGVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVIL+KHVIDGRT                        VEAKKAVPKDDQNMLNR+SGSI
Sbjct: 61  ERVILDKHVIDGRT------------------------VEAKKAVPKDDQNMLNRSSGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE VDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQ Y
Sbjct: 181 EECVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVR DGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ
Sbjct: 241 NMSPLGGYGVRPDGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS AM+SSGPG FSGS
Sbjct: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSNAMSSSGPGAFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT---NNGYAIGDNE-LGFRGGYGRNGVV 420
           GTGNFRVAYGNNDDNWS PAV NHVG + PGYT   NNGYAIGDN   GFRGGYGRNGVV
Sbjct: 361 GTGNFRVAYGNNDDNWSSPAVANHVGANVPGYTFGNNNGYAIGDNNGFGFRGGYGRNGVV 420

Query: 421 SNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDP 480
           SNVA RKAFVE  NGYERSYRDLYRDE VHDDSTWQS APELDGSVSFGYGLGNLASDDP
Sbjct: 421 SNVAARKAFVEMNNGYERSYRDLYRDEAVHDDSTWQSTAPELDGSVSFGYGLGNLASDDP 480

Query: 481 AKSSESFLASYDVSSRQSTRGIAA 501
           AKSSESFLASYDVSSRQSTRGIAA
Sbjct: 481 AKSSESFLASYDVSSRQSTRGIAA 480

[Close]

BLAST of Clc10G04680 vs. NCBI nr
Match: XP_022158863.1 (heterogeneous nuclear ribonucleoprotein 1-like [Momordica charantia] >XP_022158864.1 heterogeneous nuclear ribonucleoprotein 1-like [Momordica charantia])

HSP 1 Score: 854.4 bits (2206), Expect = 5.0e-244
Identity = 435/503 (86.48%), Postives = 452/503 (89.86%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDR TGRARGFGFVVFADPAVA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVILEKHVIDGRT                        VEAKKAVPKDDQN+LNRN+GSI
Sbjct: 61  ERVILEKHVIDGRT------------------------VEAKKAVPKDDQNILNRNAGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE+VDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSR SGFLN+YTQ Y
Sbjct: 181 EEAVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRASGFLNNYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVRADGRLSPIISSRTGVPHFG ANYGVG+NLEQG+RQGYGRT+NIMN+QAQ
Sbjct: 241 NMSPLGGYGVRADGRLSPIISSRTGVPHFGAANYGVGMNLEQGLRQGYGRTVNIMNTQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYI PIGYSGGNGR DSPLSSSTWNVWGNGSM+T MN+ GPG+FSGS
Sbjct: 301 EQMLNSYYNGNSNRYITPIGYSGGNGRDDSPLSSSTWNVWGNGSMTTPMNTPGPGSFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT--NNGYAIGDNELGFR-GGYGRNGVVS 420
           G+G+FRVAYGNNDDNW   A  NHVGG+APGYT  +NGY IGDN  GFR GGYGRNGV S
Sbjct: 361 GSGSFRVAYGNNDDNWISAAAANHVGGNAPGYTCASNGYGIGDNGFGFRGGGYGRNGVPS 420

Query: 421 NVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPA 480
             ATRKAF ETT GYERSYRDLYRDE VHDDSTWQS APELDGSVSFGYGLGNLASDDPA
Sbjct: 421 -AATRKAFAETTEGYERSYRDLYRDEAVHDDSTWQSTAPELDGSVSFGYGLGNLASDDPA 478

Query: 481 KSSESFLASYDVSSRQSTRGIAA 501
           +SSESFLASYDVS+RQSTRGIAA
Sbjct: 481 RSSESFLASYDVSNRQSTRGIAA 478

[Close]

BLAST of Clc10G04680 vs. NCBI nr
Match: KAG7028405.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 832.0 bits (2148), Expect = 2.7e-237
Identity = 425/503 (84.49%), Postives = 450/503 (89.46%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLR+YFG+YGEVVEAVIMRDR+TGRARGFGFVVFADPAVA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFGSYGEVVEAVIMRDRSTGRARGFGFVVFADPAVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVILEKH+IDGRT                        VEAKKAVPKDDQN LNRN+GSI
Sbjct: 61  ERVILEKHIIDGRT------------------------VEAKKAVPKDDQNTLNRNNGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSP SGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPISGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE+VDRVLHKTFHELNGKMVEVKRAIPKELTPG NRSP+VGYNYGMSR SGFLNSYTQSY
Sbjct: 181 EEAVDRVLHKTFHELNGKMVEVKRAIPKELTPGSNRSPIVGYNYGMSRASGFLNSYTQSY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLGSYGVRADGRLSP+ISSRTG+PHFG+ NYGVGVNLEQG+RQGYGR+LNIMNSQAQ
Sbjct: 241 NMSPLGSYGVRADGRLSPVISSRTGIPHFGSNNYGVGVNLEQGLRQGYGRSLNIMNSQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNR+I PIGYSGGNGRGDS LSSSTWNVWGNGSM+ AMNS  PG FSGS
Sbjct: 301 EQMLNSYYNGNSNRFITPIGYSGGNGRGDSLLSSSTWNVWGNGSMNNAMNSPDPGAFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHA-PGYT-NNGYAIGDNELGFRGG-YGRNGVVS 420
           G GNFRVAYGN+DDNWS  AV NHVG +A PGYT NNGY IG++E G RGG YGRNGVVS
Sbjct: 361 GMGNFRVAYGNSDDNWSSAAVGNHVGVNAPPGYTNNNGYGIGESEFGIRGGNYGRNGVVS 420

Query: 421 NVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPA 480
           +VATRKAF ETT+GYERSYR+LYRD  VHDDSTW S  PELDGSV+FGYGLG+L SDDPA
Sbjct: 421 SVATRKAFAETTDGYERSYRELYRDGTVHDDSTWPSTTPELDGSVAFGYGLGSLPSDDPA 479

Query: 481 KSSESFLASYDVSSRQSTRGIAA 501
           KSSE+FLASYDVSSRQS+RGIAA
Sbjct: 481 KSSENFLASYDVSSRQSSRGIAA 479

[Close]

BLAST of Clc10G04680 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.4e-63
Identity = 174/449 (38.75%), Postives = 237/449 (52.78%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           M+SD GKLF+GGISW+TDE++LRE+F NYGEV +A++MRD+ TGR RGFGFV+F+DP+V 
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           +RV+ EKH ID R                        +V+ K+A+ +++Q +  R +G++
Sbjct: 61  DRVLQEKHSIDTR------------------------EVDVKRAMSREEQQVSGR-TGNL 120

Query: 121 HGSPSSG-----RTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGF 180
           + S SSG     +TKKIFVGGL  T+T+ +F++YF+ +G +TDV +MYD +T RPRGFGF
Sbjct: 121 NTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGF 180

Query: 181 ITYDSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNS 240
           +++DSE++VD VLHKTFH+L+GK VEVKRA+PK+  PG           G S   G    
Sbjct: 181 VSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGGG---------GRSMGGGGSGG 240

Query: 241 YTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGV-NLEQGMRQGYGRTLNI 300
           Y Q Y  +     G     R     S   G+P +G++ YG G  N   G   GYG     
Sbjct: 241 Y-QGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGNGSNG--AGYGAYGGY 300

Query: 301 MNSQAQEQMLNSYYNGNSNRYIAPIGYSGGNG-----RGDSPLSSSTWNV-WGNGSMSTA 360
             S        +   G +N  I   GY    G       D+P SS   N  +G+G+  + 
Sbjct: 301 TGSAGGYGAGATAGYGATN--IPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSG 360

Query: 361 MNSSG--PGTFSGSGTGNFRVAYG---NNDDNWSLPAVVNHVGGH----------APGYT 415
               G  P T S SG  N    YG    +D  +   A    VGG           + GY 
Sbjct: 361 YGVPGAAPPTQSPSGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGGGSNNPGSGGYM 410

[Close]

BLAST of Clc10G04680 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.6e-43
Identity = 96/209 (45.93%), Postives = 131/209 (62.68%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           M+ D  KLF+GGI+ +T EE L++YF  YG V+EAV+ +++ TG+ RGFGFV FA+    
Sbjct: 1   MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
            + + + H I G+     +D  K      L    F+ Q   +K         +N     +
Sbjct: 61  VKALRDTHFILGKP----VDVRKAIRKHELYQQPFSMQFLERKV------QQMNGGLREM 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
             +  + RTKKIFVGGL+S  TE +F+ YF++FG  TDVVVM+D  T RPRGFGF+TYDS
Sbjct: 121 SSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKE 210
           E+SV+ V+   FHEL+ K VEVKRAIPKE
Sbjct: 181 EDSVEVVMQSNFHELSDKRVEVKRAIPKE 199

[Close]

BLAST of Clc10G04680 vs. ExPASy Swiss-Prot
Match: Q98SJ2 (DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.2e-42
Identity = 99/253 (39.13%), Postives = 141/253 (55.73%), Query Frame = 0


Query: 4   DLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERV 63
           ++GKLF+GG+ W T +E LR YF  YGEVV+ VIM+D+TT ++RGFGFV F DP     V
Sbjct: 8   EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 67

Query: 64  ILEK-HVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNR-NSGSIH 123
           +  + H +DGR                         ++ K   P+  Q   +R   G   
Sbjct: 68  LASRPHTLDGR------------------------NIDPKPCTPRGMQPERSRPREGWQQ 127

Query: 124 GSP--SSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYD 183
             P   + R+ KIFVGG+     E + ++YF++FG +T+VV++YD   QRPRGFGFIT++
Sbjct: 128 KEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFE 187

Query: 184 SEESVDRVLHKTFHELNGKMVEVKRAIP---KELTPGPNRSPLVGYNYGMSRPSGFLNSY 243
            E+SVD+ ++  FH++ GK VEVKRA P   K  TPGP  S   G     S  +G+    
Sbjct: 188 DEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQP 236

Query: 244 TQSY-NMSPLGSY 249
            Q++   SP G +
Sbjct: 248 PQTWQGYSPQGMW 236

[Close]

BLAST of Clc10G04680 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 172.9 bits (437), Expect = 8.9e-42
Identity = 105/278 (37.77%), Postives = 145/278 (52.16%), Query Frame = 0


Query: 3   SDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAER 62
           +D GK+FIGG+SW T  E LR+YFG YG++ EA++M+D TT R+RGFGFV F+DP   ++
Sbjct: 26  NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85

Query: 63  VILE-KHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSIH 122
           V+ +  H +DG+                        +V+ K A P+     +        
Sbjct: 86  VLTQGTHELDGK------------------------KVDPKVAFPRRAHPKM-------- 145

Query: 123 GSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSE 182
                 RTKKIFVGGL++  T  D + YF+QFG I D ++M+D  T R RGFGF+T+ SE
Sbjct: 146 ----VTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSE 205

Query: 183 ESVDRVLHKTFHELNGKMVEVKRAIPKEL--------TPGPNRSPLVGYNYGM-SRPSGF 242
           + VD+V    FHE+N KMVE K+A PKE+        T    RS      +G+ + P GF
Sbjct: 206 DVVDKVCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYDNIMWGLGTLPEGF 250

Query: 243 LNSYTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFG 271
                      P  +Y   A GR        +G P FG
Sbjct: 266 -----------PAAAYAAYAAGR------GYSGYPSFG 250

[Close]

BLAST of Clc10G04680 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.2e-41
Identity = 107/305 (35.08%), Postives = 158/305 (51.80%), Query Frame = 0


Query: 2   ESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAE 61
           + D GK+FIGG+SW T  + LR+YF  +GE+ E ++MRD TT R+RGFGFV FADPA  +
Sbjct: 17  QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76

Query: 62  RVILE-KHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 121
           +V+ +  H +D +T                        ++ K A P+  Q  +       
Sbjct: 77  KVLGQPHHELDSKT------------------------IDPKVAFPRRAQPKM------- 136

Query: 122 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 181
                  RTKKIFVGGL++     D ++YF+QFG + D ++M+D +T R RGFGF+T+++
Sbjct: 137 -----VTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFEN 196

Query: 182 EESVDRVLHKTFHELNGKMVEVKRAIPKEL-----TPGPNRS------------PLVGY- 241
           E+ V++V    FHE+N KMVE K+A PKE+     T G  R              ++GY 
Sbjct: 197 EDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYP 256

Query: 242 ----NYGMSRPSGFLNSYTQSYNMSPLGSYGVRADGRLS----PIISSRTGVPHFGTANY 280
                YG   P GF  SY   +   P  +YG  A   ++     +++S +  P+FG    
Sbjct: 257 NFVATYGRGYP-GFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPAS 284

[Close]

BLAST of Clc10G04680 vs. ExPASy TrEMBL
Match: A0A5A7VHF8 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001770 PE=4 SV=1)

HSP 1 Score: 892.1 bits (2304), Expect = 1.1e-255
Identity = 454/504 (90.08%), Postives = 459/504 (91.07%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFG YGEVVEAVIMRDRTTGRARGFGFVVFADP VA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGQYGEVVEAVIMRDRTTGRARGFGFVVFADPGVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVIL+KHVIDGRT                        VEAKKAVPKDDQNMLNRNSGSI
Sbjct: 61  ERVILDKHVIDGRT------------------------VEAKKAVPKDDQNMLNRNSGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSP SGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPGSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE VDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQ Y
Sbjct: 181 EECVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVR DGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLN+MNSQAQ
Sbjct: 241 NMSPLGGYGVRPDGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNVMNSQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS AM+SSGPGTFSGS
Sbjct: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSNAMSSSGPGTFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT---NNGYAIGDNE-LGFRGGYGRNGVV 420
           GTGNFRVAYGNNDDNW+ PAV NHVG + PGYT   NNGYAIGDN   GFRGGYGRNGVV
Sbjct: 361 GTGNFRVAYGNNDDNWNSPAVANHVGANVPGYTFGNNNGYAIGDNNGFGFRGGYGRNGVV 420

Query: 421 SNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDP 480
           SNVA RKAFVET NGYERSYRDLYRDEVVHDDSTWQS APELDGSVSFGYGLGNLASDDP
Sbjct: 421 SNVAARKAFVETNNGYERSYRDLYRDEVVHDDSTWQSTAPELDGSVSFGYGLGNLASDDP 480

Query: 481 AKSSESFLASYDVSSRQSTRGIAA 501
           AKSSESFLASYDVSSRQSTRGIAA
Sbjct: 481 AKSSESFLASYDVSSRQSTRGIAA 480

[Close]

BLAST of Clc10G04680 vs. ExPASy TrEMBL
Match: A0A1S3BKM2 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103491055 PE=4 SV=1)

HSP 1 Score: 892.1 bits (2304), Expect = 1.1e-255
Identity = 454/504 (90.08%), Postives = 459/504 (91.07%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFG YGEVVEAVIMRDRTTGRARGFGFVVFADP VA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGQYGEVVEAVIMRDRTTGRARGFGFVVFADPGVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVIL+KHVIDGRT                        VEAKKAVPKDDQNMLNRNSGSI
Sbjct: 61  ERVILDKHVIDGRT------------------------VEAKKAVPKDDQNMLNRNSGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSP SGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPGSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE VDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQ Y
Sbjct: 181 EECVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVR DGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLN+MNSQAQ
Sbjct: 241 NMSPLGGYGVRPDGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNVMNSQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS AM+SSGPGTFSGS
Sbjct: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSNAMSSSGPGTFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT---NNGYAIGDNE-LGFRGGYGRNGVV 420
           GTGNFRVAYGNNDDNW+ PAV NHVG + PGYT   NNGYAIGDN   GFRGGYGRNGVV
Sbjct: 361 GTGNFRVAYGNNDDNWNSPAVANHVGANVPGYTFGNNNGYAIGDNNGFGFRGGYGRNGVV 420

Query: 421 SNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDP 480
           SNVA RKAFVET NGYERSYRDLYRDEVVHDDSTWQS APELDGSVSFGYGLGNLASDDP
Sbjct: 421 SNVAARKAFVETNNGYERSYRDLYRDEVVHDDSTWQSTAPELDGSVSFGYGLGNLASDDP 480

Query: 481 AKSSESFLASYDVSSRQSTRGIAA 501
           AKSSESFLASYDVSSRQSTRGIAA
Sbjct: 481 AKSSESFLASYDVSSRQSTRGIAA 480

[Close]

BLAST of Clc10G04680 vs. ExPASy TrEMBL
Match: A0A0A0L293 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G062570 PE=4 SV=1)

HSP 1 Score: 887.9 bits (2293), Expect = 2.0e-254
Identity = 453/504 (89.88%), Postives = 458/504 (90.87%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFG+YGEVVEAVIMRDRTTGRARGFGFVVFADP VA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGHYGEVVEAVIMRDRTTGRARGFGFVVFADPGVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVIL+KHVIDGRT                        VEAKKAVPKDDQNMLNR+SGSI
Sbjct: 61  ERVILDKHVIDGRT------------------------VEAKKAVPKDDQNMLNRSSGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE VDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQ Y
Sbjct: 181 EECVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVR DGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ
Sbjct: 241 NMSPLGGYGVRPDGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS AM+SSGPG FSGS
Sbjct: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSNAMSSSGPGAFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT---NNGYAIGDNE-LGFRGGYGRNGVV 420
           GTGNFRVAYGNNDDNWS PAV NHVG + PGYT   NNGYAIGDN   GFRGGYGRNGVV
Sbjct: 361 GTGNFRVAYGNNDDNWSSPAVANHVGANVPGYTFGNNNGYAIGDNNGFGFRGGYGRNGVV 420

Query: 421 SNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDP 480
           SNVA RKAFVE  NGYERSYRDLYRDE VHDDSTWQS APELDGSVSFGYGLGNLASDDP
Sbjct: 421 SNVAARKAFVEMNNGYERSYRDLYRDEAVHDDSTWQSTAPELDGSVSFGYGLGNLASDDP 480

Query: 481 AKSSESFLASYDVSSRQSTRGIAA 501
           AKSSESFLASYDVSSRQSTRGIAA
Sbjct: 481 AKSSESFLASYDVSSRQSTRGIAA 480

[Close]

BLAST of Clc10G04680 vs. ExPASy TrEMBL
Match: A0A6J1DX93 (heterogeneous nuclear ribonucleoprotein 1-like OS=Momordica charantia OX=3673 GN=LOC111025325 PE=4 SV=1)

HSP 1 Score: 854.4 bits (2206), Expect = 2.4e-244
Identity = 435/503 (86.48%), Postives = 452/503 (89.86%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDR TGRARGFGFVVFADPAVA
Sbjct: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRATGRARGFGFVVFADPAVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVILEKHVIDGRT                        VEAKKAVPKDDQN+LNRN+GSI
Sbjct: 61  ERVILEKHVIDGRT------------------------VEAKKAVPKDDQNILNRNAGSI 120

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE+VDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSR SGFLN+YTQ Y
Sbjct: 181 EEAVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRASGFLNNYTQGY 240

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLG YGVRADGRLSPIISSRTGVPHFG ANYGVG+NLEQG+RQGYGRT+NIMN+QAQ
Sbjct: 241 NMSPLGGYGVRADGRLSPIISSRTGVPHFGAANYGVGMNLEQGLRQGYGRTVNIMNTQAQ 300

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNRYI PIGYSGGNGR DSPLSSSTWNVWGNGSM+T MN+ GPG+FSGS
Sbjct: 301 EQMLNSYYNGNSNRYITPIGYSGGNGRDDSPLSSSTWNVWGNGSMTTPMNTPGPGSFSGS 360

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYT--NNGYAIGDNELGFR-GGYGRNGVVS 420
           G+G+FRVAYGNNDDNW   A  NHVGG+APGYT  +NGY IGDN  GFR GGYGRNGV S
Sbjct: 361 GSGSFRVAYGNNDDNWISAAAANHVGGNAPGYTCASNGYGIGDNGFGFRGGGYGRNGVPS 420

Query: 421 NVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPA 480
             ATRKAF ETT GYERSYRDLYRDE VHDDSTWQS APELDGSVSFGYGLGNLASDDPA
Sbjct: 421 -AATRKAFAETTEGYERSYRDLYRDEAVHDDSTWQSTAPELDGSVSFGYGLGNLASDDPA 478

Query: 481 KSSESFLASYDVSSRQSTRGIAA 501
           +SSESFLASYDVS+RQSTRGIAA
Sbjct: 481 RSSESFLASYDVSNRQSTRGIAA 478

[Close]

BLAST of Clc10G04680 vs. ExPASy TrEMBL
Match: A0A6J1KSZ8 (heterogeneous nuclear ribonucleoprotein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498392 PE=4 SV=1)

HSP 1 Score: 827.4 bits (2136), Expect = 3.2e-236
Identity = 423/503 (84.10%), Postives = 447/503 (88.87%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLR+YFG+YGEVVEAVI+RDR+TGRARGFGFVVFADPAVA
Sbjct: 10  MESDLGKLFIGGISWDTDEERLRDYFGSYGEVVEAVIIRDRSTGRARGFGFVVFADPAVA 69

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVILEKH+IDGRT                        VEAKKAVPKDDQN LNRN+GSI
Sbjct: 70  ERVILEKHIIDGRT------------------------VEAKKAVPKDDQNTLNRNNGSI 129

Query: 121 HGSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 180
           HGSP SGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS
Sbjct: 130 HGSPISGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDS 189

Query: 181 EESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPLVGYNYGMSRPSGFLNSYTQSY 240
           EE+VD VLHKTFHELNGKMVEVKRAIPKELTPG NRSP+VGYNYGMSR SGFLNSYTQSY
Sbjct: 190 EEAVDLVLHKTFHELNGKMVEVKRAIPKELTPGSNRSPVVGYNYGMSRASGFLNSYTQSY 249

Query: 241 NMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNSQAQ 300
           NMSPLGSYGVRADGRLSP+ SSRTG+PHFGT NYGVGVNLEQG+RQGYGR+LNIMNSQAQ
Sbjct: 250 NMSPLGSYGVRADGRLSPVFSSRTGIPHFGTNNYGVGVNLEQGLRQGYGRSLNIMNSQAQ 309

Query: 301 EQMLNSYYNGNSNRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMSTAMNSSGPGTFSGS 360
           EQMLNSYYNGNSNR+I PIGYSGGNGRGDS LSSSTWNVWGNGSM+ AMNS  PG FSGS
Sbjct: 310 EQMLNSYYNGNSNRFITPIGYSGGNGRGDSLLSSSTWNVWGNGSMNNAMNSPNPGAFSGS 369

Query: 361 GTGNFRVAYGNNDDNWSLPAVVNHVGGHA-PGYT-NNGYAIGDNELGFR-GGYGRNGVVS 420
           G GNFRVAYGNNDDNWS  AV NHVG +A PGYT NNGY IG++E G R GGYGRNGVVS
Sbjct: 370 GMGNFRVAYGNNDDNWSSAAVGNHVGVNAPPGYTNNNGYGIGESEFGIRGGGYGRNGVVS 429

Query: 421 NVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAPELDGSVSFGYGLGNLASDDPA 480
           +VAT+KAF ETT+GYERSYR+LYRD  VHDDSTW S  PELDGSV FGYGLG+LASDDPA
Sbjct: 430 SVATQKAFAETTDGYERSYRELYRDGTVHDDSTWPSTTPELDGSVPFGYGLGSLASDDPA 488

Query: 481 KSSESFLASYDVSSRQSTRGIAA 501
           KSSE+FLASYDVSSRQ +RGIAA
Sbjct: 490 KSSENFLASYDVSSRQPSRGIAA 488

[Close]

BLAST of Clc10G04680 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 445.3 bits (1144), Expect = 6.6e-125
Identity = 263/522 (50.38%), Postives = 337/522 (64.56%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           M+SD GKLFIGGISWDT+EERL+EYF ++GEV+EAVI++DRTTGRARGFGFVVFADPAVA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNR-NSGS 120
           E VI EKH IDGR                         VEAKKAVP+DDQNM+NR NS S
Sbjct: 61  EIVITEKHNIDGRL------------------------VEAKKAVPRDDQNMVNRSNSSS 120

Query: 121 IHGSPSS-GRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITY 180
           I GSP   GRT+KIFVGGL S+VTE+DF+ YF+QFGT TDVVVMYDH+TQRPRGFGFITY
Sbjct: 121 IQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 180

Query: 181 DSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPL-VGYNYGMSRPSGFLNSYT 240
           DSEE+V++VL KTFHELNGKMVEVKRA+PKEL+PGP+RSPL  GY+YG++R +  LN Y 
Sbjct: 181 DSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYA 240

Query: 241 QSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNS 300
           Q +N + +G YG+R DGR SP+ + R+G  ++ ++ YG+ VN +QG+  G+    N   +
Sbjct: 241 QGFNPAAVGGYGLRMDGRFSPVGAGRSGFANY-SSGYGMNVNFDQGLPTGFTGGTNYNGN 300

Query: 301 QAQEQMLNSYYNGNSNRYIAPIGYSGGNGRGDSP-LSSSTWNVWGNGS----MSTAMNSS 360
               + ++ YY GN+NR+   +GY GGNG G+S   SS T N+WGN       +   NS+
Sbjct: 301 VDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSN 360

Query: 361 GPGTFSGSGTGNFRVA--YGNNDDNWSLPAVVNHVGGHAPGYTNNGYAIGDN-ELGF--- 420
                 GS +GN  ++  +GN+  NW  P      G +A    N  +  G N E GF   
Sbjct: 361 SNTYMGGSSSGNNTLSGPFGNSGVNWGAPG----GGNNAVSNENVKFGYGGNGESGFGLG 420

Query: 421 RGGY-----GRNGVVSNVATRKAFVETTNGYERS-YRDLYRDEVVHDDSTWQSAAPELDG 480
            GGY     G N    + +   A      GY+ +   + Y +  V+ D TW+S  PE +G
Sbjct: 421 TGGYAARNPGANKAAPSSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEG 480

Query: 481 SVSFGYGLGN--LASDDPAKSSE-SFLASYDVSSRQSTRGIA 500
              F YG+G    +SD  A+SS   ++ SY V+ RQ  RGIA
Sbjct: 481 PAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRGIA 493

[Close]

BLAST of Clc10G04680 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 442.2 bits (1136), Expect = 5.6e-124
Identity = 261/520 (50.19%), Postives = 335/520 (64.42%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           M+SD GKLFIGGISWDT+EERL+EYF ++GEV+EAVI++DRTTGRARGFGFVVFADPAVA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNR-NSGS 120
           E VI EKH IDGR                         VEAKKAVP+DDQNM+NR NS S
Sbjct: 61  EIVITEKHNIDGRL------------------------VEAKKAVPRDDQNMVNRSNSSS 120

Query: 121 IHGSPSS-GRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITY 180
           I GSP   GRT+KIFVGGL S+VTE+DF+ YF+QFGT TDVVVMYDH+TQRPRGFGFITY
Sbjct: 121 IQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITY 180

Query: 181 DSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPNRSPL-VGYNYGMSRPSGFLNSYT 240
           DSEE+V++VL KTFHELNGKMVEVKRA+PKEL+PGP+RSPL  GY+YG++R +  LN Y 
Sbjct: 181 DSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYA 240

Query: 241 QSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGYGRTLNIMNS 300
           Q +N + +G YG+R DGR SP+ + R+G  ++ ++ YG+ VN +QG+  G+    N   +
Sbjct: 241 QGFNPAAVGGYGLRMDGRFSPVGAGRSGFANY-SSGYGMNVNFDQGLPTGFTGGTNYNGN 300

Query: 301 QAQEQMLNSYYNGNSNRYIAPIGYSGGNGRGDSP-LSSSTWNVWGNGS----MSTAMNSS 360
               + ++ YY GN+NR+   +GY GGNG G+S   SS T N+WGN       +   NS+
Sbjct: 301 VDYGRGMSPYYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSN 360

Query: 361 GPGTFSGSGTGNFRVA--YGNNDDNWSLPAVVNHVGGHAPGYTNNGYAIGDN-ELGF--- 420
                 GS +GN  ++  +GN+  NW  P      G +A    N  +  G N E GF   
Sbjct: 361 SNTYMGGSSSGNNTLSGPFGNSGVNWGAPG----GGNNAVSNENVKFGYGGNGESGFGLG 420

Query: 421 RGGY-----GRNGVVSNVATRKAFVETTNGYERS-YRDLYRDEVVHDDSTWQSAAPELDG 480
            GGY     G N    + +   A      GY+ +   + Y +  V+ D TW+S  PE +G
Sbjct: 421 TGGYAARNPGANKAAPSSSFSSASATNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEG 480

Query: 481 SVSFGYGLGN--LASDDPAKSSE-SFLASYDVSSRQSTRG 498
              F YG+G    +SD  A+SS   ++ SY V+ RQ  RG
Sbjct: 481 PAPFSYGIGGGVPSSDVSARSSSPGYVGSYSVNKRQPNRG 491

[Close]

BLAST of Clc10G04680 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-118
Identity = 262/521 (50.29%), Postives = 326/521 (62.57%), Query Frame = 0


Query: 3   SDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAER 62
           SDLGKLFIGGISWDTDEERL+EYFG YG++VEAVIMRDRTTGRARGFGF+VFADP+VAER
Sbjct: 12  SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71

Query: 63  VILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSIH- 122
           VI++KH+IDGRT                        VEAKKAVP+DDQ +L R++  +H 
Sbjct: 72  VIMDKHIIDGRT------------------------VEAKKAVPRDDQQVLKRHASPMHL 131

Query: 123 ------GSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGF 182
                 G+    RTKKIFVGGL S++TEA+F+ YFDQFGTI DVVVMYDH+TQRPRGFGF
Sbjct: 132 ISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGF 191

Query: 183 ITYDSEESVDRVLHKTFHELNGKMVEVKRAIPKEL-TPGPNRSPLVGY--NYGM----SR 242
           IT+DSEESVD VLHKTFHELNGKMVEVKRA+PKEL +  PNRSPL+GY  NYG+    S 
Sbjct: 192 ITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSS 251

Query: 243 PSGFLNSYTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGY 302
            + + NS+   YN + LGS      GR SPI S R        +++G+G+N E  +   +
Sbjct: 252 ANSYFNSFPPGYNNNNLGS-----AGRFSPIGSGRNAF-----SSFGLGLNQELNLNSNF 311

Query: 303 -GRTLNIMNSQAQEQMLNSYYNGNS-NRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS 362
            G TL            N Y+N  S NRY +PIGY+    RGDS  + S  ++WGN S  
Sbjct: 312 DGNTLGYSRIPG-----NQYFNSASPNRYNSPIGYN----RGDSAYNPSNRDLWGNRS-- 371

Query: 363 TAMNSSGPGTFSGSGTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYTNNGYAIGDNELGF 422
              +SSGPG        N  V+ GNN  NW L +VV+          NNGY        +
Sbjct: 372 ---DSSGPG-------WNLGVSVGNNRGNWGLSSVVS---------DNNGYG-----RSY 431

Query: 423 RGGYGRNGVVSNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAP------ELDG 482
             G G +G+        +F   TNG++ S  +LYR   V+ DSTWQ + P      ELDG
Sbjct: 432 GAGSGLSGL--------SFAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDG 455

Query: 483 -SVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA 501
            S S+G+G+ N+ SD  A +SE +  +Y+V +RQ+ RGI A
Sbjct: 492 LSRSYGFGIDNVGSDPSANASEGYSGNYNVGNRQTHRGIEA 455

[Close]

BLAST of Clc10G04680 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 424.5 bits (1090), Expect = 1.2e-118
Identity = 262/521 (50.29%), Postives = 326/521 (62.57%), Query Frame = 0


Query: 3   SDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAER 62
           SDLGKLFIGGISWDTDEERL+EYFG YG++VEAVIMRDRTTGRARGFGF+VFADP+VAER
Sbjct: 9   SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68

Query: 63  VILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSIH- 122
           VI++KH+IDGRT                        VEAKKAVP+DDQ +L R++  +H 
Sbjct: 69  VIMDKHIIDGRT------------------------VEAKKAVPRDDQQVLKRHASPMHL 128

Query: 123 ------GSPSSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGF 182
                 G+    RTKKIFVGGL S++TEA+F+ YFDQFGTI DVVVMYDH+TQRPRGFGF
Sbjct: 129 ISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGF 188

Query: 183 ITYDSEESVDRVLHKTFHELNGKMVEVKRAIPKEL-TPGPNRSPLVGY--NYGM----SR 242
           IT+DSEESVD VLHKTFHELNGKMVEVKRA+PKEL +  PNRSPL+GY  NYG+    S 
Sbjct: 189 ITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSS 248

Query: 243 PSGFLNSYTQSYNMSPLGSYGVRADGRLSPIISSRTGVPHFGTANYGVGVNLEQGMRQGY 302
            + + NS+   YN + LGS      GR SPI S R        +++G+G+N E  +   +
Sbjct: 249 ANSYFNSFPPGYNNNNLGS-----AGRFSPIGSGRNAF-----SSFGLGLNQELNLNSNF 308

Query: 303 -GRTLNIMNSQAQEQMLNSYYNGNS-NRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS 362
            G TL            N Y+N  S NRY +PIGY+    RGDS  + S  ++WGN S  
Sbjct: 309 DGNTLGYSRIPG-----NQYFNSASPNRYNSPIGYN----RGDSAYNPSNRDLWGNRS-- 368

Query: 363 TAMNSSGPGTFSGSGTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYTNNGYAIGDNELGF 422
              +SSGPG        N  V+ GNN  NW L +VV+          NNGY        +
Sbjct: 369 ---DSSGPG-------WNLGVSVGNNRGNWGLSSVVS---------DNNGYG-----RSY 428

Query: 423 RGGYGRNGVVSNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQSAAP------ELDG 482
             G G +G+        +F   TNG++ S  +LYR   V+ DSTWQ + P      ELDG
Sbjct: 429 GAGSGLSGL--------SFAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDG 452

Query: 483 -SVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA 501
            S S+G+G+ N+ SD  A +SE +  +Y+V +RQ+ RGI A
Sbjct: 489 LSRSYGFGIDNVGSDPSANASEGYSGNYNVGNRQTHRGIEA 452

[Close]

BLAST of Clc10G04680 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 389.8 bits (1000), Expect = 3.3e-108
Identity = 250/521 (47.98%), Postives = 316/521 (60.65%), Query Frame = 0


Query: 1   MESDLGKLFIGGISWDTDEERLREYFGNYGEVVEAVIMRDRTTGRARGFGFVVFADPAVA 60
           MESDLGKLFIGGISWDTDEERLR+YF NYG+VVEAVIMRDR TGRARGFGF+VFADP V+
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 61  ERVILEKHVIDGRTLSSLLDYAKFRVVFLLNVVTFNFQVEAKKAVPKDDQNMLNRNSGSI 120
           ERVI++KH+IDGRT                        VEAKKAVP+DDQ +L R++  I
Sbjct: 61  ERVIMDKHIIDGRT------------------------VEAKKAVPRDDQQVLKRHASPI 120

Query: 121 H-GSP---SSGRTKKIFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFI 180
           H  SP     GRTKKIFVGGL S++TE +F+ YFDQFGTI DVVVMYDH+TQRPRGFGFI
Sbjct: 121 HLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 180

Query: 181 TYDSEESVDRVLHKTFHELNGKMVEVKRAIPKELTPGPN-RSPLV-GYNYGMSRPSGFLN 240
           T+DS+++VDRVLHKTFHELNGK+VEVKRA+PKE++P  N RSPL  G NYG        N
Sbjct: 181 TFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPAN 240

Query: 241 SYTQSYNMSP-----LGSYGVRADGRLSPII-SSRTGVPHFGTA-NYGVGVNLEQGMRQG 300
           SY  ++   P     LG  G     R SP+I S R  V  FG   N+ + +NL      G
Sbjct: 241 SYFNNFAPGPGFYNSLGPVG----RRFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSC-DG 300

Query: 301 YGRTLNIMNSQAQEQMLNSYYNGNS-NRYIAPIGYSGGNGRGDSPLSSSTWNVWGNGSMS 360
              T       +     N Y+NG S NRY +PIG++    R +SP +S+  ++WGN +  
Sbjct: 301 TSSTFGYNRIPS-----NPYFNGASPNRYTSPIGHN----RTESPYNSNNRDLWGNRT-- 360

Query: 361 TAMNSSGPGTFSGSGTGNFRVAYGNNDDNWSLPAVVNHVGGHAPGYTNNGYAIGDNELGF 420
              +++GPG        N  V+ GNN  NW LP               +  A+ ++  GF
Sbjct: 361 ---DTAGPG-------WNLNVSNGNNRGNWGLP---------------SSSAVSNDNNGF 420

Query: 421 RGGYGRNGVVSNVATRKAFVETTNGYERSYRDLYRDEVVHDDSTWQ------SAAPELDG 480
              YG +  +S+           NG+E S  +LYR   V+ DSTWQ       ++ ELD 
Sbjct: 421 GRNYGTSSGLSS--------SPFNGFEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDN 448

Query: 481 -SVSFGYGLGNLASDDPAKSSESFLASYDVSSRQSTRGIAA 501
            S ++GY + N+ SD  A   E++  SY+V +RQ+ RGIAA
Sbjct: 481 LSRAYGYDIDNVGSDPSANDPETYNGSYNVGNRQTNRGIAA 448

The following BLAST results are available for this feature:

BLAST of Clc10G04680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904623.1	2.4e-262	92.45	heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida] >XP_038904624...	[more]
XP_008449083.1	2.2e-255	90.08	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo] >KAA0065786....	[more]
XP_004149577.1	4.1e-254	89.88	heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN56055.1 hypothet...	[more]
XP_022158863.1	5.0e-244	86.48	heterogeneous nuclear ribonucleoprotein 1-like [Momordica charantia] >XP_0221588...	[more]
KAG7028405.1	2.7e-237	84.49	Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Clc10G04680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	1.4e-63	38.75	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q9C652	1.6e-43	45.93	RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1	[more]
Q98SJ2	5.2e-42	39.13	DAZ-associated protein 1 OS=Xenopus laevis OX=8355 GN=dazap1 PE=1 SV=1	[more]
Q9VVE5	8.9e-42	37.77	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R...	[more]
Q920Q6	1.2e-41	35.08	RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1	[more]

BLAST of Clc10G04680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VHF8	1.1e-255	90.08	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BKM2	1.1e-255	90.08	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10349105...	[more]
A0A0A0L293	2.0e-254	89.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G062570 PE=4 SV=1	[more]
A0A6J1DX93	2.4e-244	86.48	heterogeneous nuclear ribonucleoprotein 1-like OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1KSZ8	3.2e-236	84.10	heterogeneous nuclear ribonucleoprotein 1-like isoform X1 OS=Cucurbita maxima OX...	[more]

BLAST of Clc10G04680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07810.1	6.6e-125	50.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	5.6e-124	50.19	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	1.2e-118	50.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.2	1.2e-118	50.29	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.1	3.3e-108	47.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..78 e-value: 3.4E-22 score: 89.7 coord: 131..203 e-value: 3.4E-23 score: 93.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 132..190 e-value: 2.1E-14 score: 53.1 coord: 8..75 e-value: 5.4E-16 score: 58.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..75 score: 17.148237
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 130..207 score: 17.557568
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 127..213 e-value: 4.0E-26 score: 93.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 6..117 e-value: 2.9E-24 score: 87.1
None	No IPR available	PANTHER	PTHR48032:SF2	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..500
None	No IPR available	PANTHER	PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	coord: 1..500
None	No IPR available	CDD	cd12325	RRM1_hnRNPA_hnRNPD_like	coord: 8..74 e-value: 1.88097E-36 score: 127.317
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 128..207 e-value: 4.37744E-49 score: 161.379
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 125..229
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G04680.2	Clc10G04680.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding