Clc10G01630 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G01630
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	ClcChr10: 1479354 .. 1482076 (-)
RNA-Seq Expression	Clc10G01630
Synteny	Clc10G01630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGGAATACCTAAAAATAAAATATCCATCGCCTTATCCATATTCTTCGCCCTCTGAAATCGAAACTATGGCGACCCTCGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTCTCTCCCTCAACCCATCGCGAAATCGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCCGAGCAAAATGAGGATGTGAATCAGAAGAAGAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCCGTCGTTGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGGTTCTTCTTCTTCTTTTGTTCTTTCTTGTTTTGTGCTAATAATGTTTATGTATTCTGATGGATTTGTGTTGGAATCTGTGTATGTACTTTTACAGATTATAAAGCAGAAAAATGGAAGGAGCAGAGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCACAAATATGACTCTCAAGTAGGTTTTCTTCAACCTATTTCTGCTCATTTTCGTTTGCTTATTTGCCCAAATGAATTCTTATTCTTTTTTTTTTTTTTTTTTTTTTTTAAAGTTGTATTCTACCAATAACTTGTTTGGTTTGGTTCTGAAATTGTGCAGTTCAATTTCAATATCACTTTTGGTATATATAATTATCTTTAAAATCTACTTAGAGAATCCTCGAGAGTTTTTTCTTTCTTGATATTTGTAAGTTTTCGGGTTGAGATTGAAGTCACTGAAATTTCAACTCATTCCTTTTATTTTTTCAACATGTTTATGATACTAAACCACCTTACAATGGTTCAAAAGCTCTTTTCATCATATAGTTTAATTAATCAAAACTAACTTGTCCTTTTTTTCTCTAGGTTTAGTGATTAAATTTTTGTATGGATACTCAGACTCAAATTGTAAAAATTATAAAAATTAACTTTTTGTTTATGTTGCAAAGTCCTGGCCAACACTAAAATCCCATTTGCCATCAAGGTTCTCACCTAACATGAATGGATGAGACCCCAAACGTGAGTTCACATCTAAAAAAAAGTTATAAAAATCGCAAAATTTTAATAATGGCGACAGTTATATTTTTACAAAAAAGATCACATTCAAGTCTCTTCAGTTCGCAATGGATGTGAACGCTTAATGGTAGTTGGTGTTTTGTGATGTAAGCAAAAGATTAATTTTCATTGTTTTTAGAATTTTGGTCATTTGACATCACCGCAACTAAATTTGAATCATCCATGAAAAAAACTCTTTAGTGATATACAAATGTTAGGGGGTTAAATAGTTGTCCCATAGAATCAATTCCACTGCATACAAGCGAGCCAAAAGACTCGTATAGTTACGTATGGGCTTATTAGTTAAAGCTCCAATCCTTTTATCAGACATTAAATATTTTAAAAGATATCTCTATTCTAATTGTCATATAGTATCAGATTCCATTCAAATTTTTGCCATTGAGGAAGTTAAGACATTTCCTAATGACTCAAGGTATCAGTCATTTTCTTTTATATTGGTTCTAAACATACATAACTGCTGCCTATTATGACATATCTAGGTCCTGTTCGTGGTAAAATATATCATGTTAATATGTTCCATGCAGGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCAGGTCCCCCTCCTGGAGAGACAGTGAATAAACTGTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGAGAGTTCTTCTCTGAAAACTTTAACCCAGTTGCGGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGGTCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAGGCTGAAACTGCACTTTCTTCATTGGAGGGGAAGGTAATTTACTTCCTGAGATCCTGTTAATTGATGAAGTTTTGCATAACCGAGAATTTATTTGGAATCACTTTCCAAATGCTTAAAAACACCATTTTAAGTACTTGAAAAGTTATTCCAAACAGACTTTCAATGTTGTTACTTACGCAAATGGTTCATGTTTGAATCAACACTCACAAATAAGAAAAAACGAAAACCTGAACTAATGCTCCTTCTTGAGTATCATTTGTTCAAAACCTGAAAAATGACCAAGTGCCATGATGCATTTTACTTCTATTCCATTCCTTCCTTGCATATTTGAAATGCTTTACTCTCTCCCTCCACAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAACCAGAAACCCCAAAAGAAGACGTTTCTGAAAGCCAATCTGAAGAATCGTAGATCCACTCGGATTCAAAATCAGTTTCATCACTTGGTAGAAAACTCAGAACCAAGATTTTGTTTGAGATTCCAACTATCCTTATGAGATTTACTGGTTGGTGTGATTTGTACATTTTACACCTGTTTTTGTAGTCTACTTTGTAGTATCATAACATTATCTGTCATCTGAAATTTCTCGATCAAGTCCTTATGGACTCTTTTGTTTTGTCTCAGAAAAATTCTTCTCTTGGTGTTGCATAAAGTAGTTCACAGAAATTGTCTGATG

mRNA sequence

AAAAGGAATACCTAAAAATAAAATATCCATCGCCTTATCCATATTCTTCGCCCTCTGAAATCGAAACTATGGCGACCCTCGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTCTCTCCCTCAACCCATCGCGAAATCGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCCGAGCAAAATGAGGATGTGAATCAGAAGAAGAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCCGTCGTTGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGAGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCACAAATATGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCAGGTCCCCCTCCTGGAGAGACAGTGAATAAACTGTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGAGAGTTCTTCTCTGAAAACTTTAACCCAGTTGCGGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGGTCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAGGCTGAAACTGCACTTTCTTCATTGGAGGGGAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAACCAGAAACCCCAAAAGAAGACGTTTCTGAAAGCCAATCTGAAGAATCGTAGATCCACTCGGATTCAAAATCAGTTTCATCACTTGGTAGAAAACTCAGAACCAAGATTTTGTTTGAGATTCCAACTATCCTTATGAGATTTACTGGTTGGTGTGATTTGTACATTTTACACCTGTTTTTGTAGTCTACTTTGTAGTATCATAACATTATCTGTCATCTGAAATTTCTCGATCAAGTCCTTATGGACTCTTTTGTTTTGTCTCAGAAAAATTCTTCTCTTGGTGTTGCATAAAGTAGTTCACAGAAATTGTCTGATG

Coding sequence (CDS)

ATGGCGACCCTCGAATCTGCAATTCCAATAATCTCTCAATACATTTCTTCTTCTTCCTCCTCAAAATTATGCTTCAATAAACTTCCCTCCGCCATTAAGCTTCGAATTTCCTTCTCTTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTCTCTCCCTCAACCCATCGCGAAATCGCGGCGGCCGACTATGTTCTGCAGTGCAAGAGGTTAGTTTGGAGGAAGCTTCCGAGCAAAATGAGGATGTGAATCAGAAGAAGAAGTTATACATCTTCAATTTACCTTGGTCTTTCTCCGTCGTTGACATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGAGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCACAAATATGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCTCCAAAGCCTCCAGGTCCCCCTCCTGGAGAGACAGTGAATAAACTGTATGTATCAAATCTTGCATGGAAAGTGAGATCAAGCAATCTCAGAGAGTTCTTCTCTGAAAACTTTAACCCAGTTGCGGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGGTCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAGGCTGAAACTGCACTTTCTTCATTGGAGGGGAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAACCAGAAACCCCAAAAGAAGACGTTTCTGAAAGCCAATCTGAAGAATCGTAG

Protein sequence

MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSRNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES

Homology

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BLAST of Clc10G01630 vs. NCBI nr
Match: XP_008448669.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 494.6 bits (1272), Expect = 5.7e-136
Identity = 257/285 (90.18%), Postives = 271/285 (95.09%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSR 60
           MATLESA+PIIS Y+SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNP TPISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  N--RGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDV 120
           N   GGRLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+DV
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGP 180
           EIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKR K+PPPPKPPGP
Sbjct: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           A+TALSSLEGKELMGRPLRLKFSER+VNE ETPKED+ ESQ EES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

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BLAST of Clc10G01630 vs. NCBI nr
Match: XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 491.5 bits (1264), Expect = 4.9e-135
Identity = 267/287 (93.03%), Postives = 269/287 (93.73%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSR 60
           MATLESAIPIISQYI SSSSSKL  NKLPSAIKLRISFSSPL  LNPTT ISPLSL+ SR
Sbjct: 1   MATLESAIPIISQYI-SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSR 60

Query: 61  NRGG----RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVT 120
           N GG    RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVT
Sbjct: 61  NHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVT 120

Query: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPP 180
           DVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKKPPPPKPP
Sbjct: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180

Query: 181 GPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 240
           GPPP ETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR
Sbjct: 181 GPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 240

Query: 241 EEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           EEAETALSSLEGKELMGRPLRLKFSERNVNE ETPKED  ESQ EES
Sbjct: 241 EEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286

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BLAST of Clc10G01630 vs. NCBI nr
Match: XP_011650340.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothetical protein Csa_011017 [Cucumis sativus])

HSP 1 Score: 490.3 bits (1261), Expect = 1.1e-134
Identity = 256/288 (88.89%), Postives = 271/288 (94.10%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS---SKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLN 60
           M T+ES +PIIS YISSSSS   SKLCFNKLPS IKLRISFSSPLLSLNPTTPISP S N
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  PSRNRGG--RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTV 120
            SRNRGG  RLCSA+QEV+LEEASE+N+DVNQK+KLYIFNLPWS SVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           REEA+TALSSLEGKELMGRPLRLKFSERNVNE ETPKED+ ESQ EES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of Clc10G01630 vs. NCBI nr
Match: KAA0053033.1 (28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK11488.1 28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 485.7 bits (1249), Expect = 2.7e-133
Identity = 255/285 (89.47%), Postives = 269/285 (94.39%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSR 60
           MATLESA+PIIS Y+SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNP TPISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  N--RGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDV 120
           N   GGRLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+D 
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSD- 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGP 180
            IIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKR K+PPPPKPPGP
Sbjct: 121 -IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           A+TALSSLEGKELMGRPLRLKFSER+VNE ETPKED+ ESQ EES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of Clc10G01630 vs. NCBI nr
Match: XP_022923294.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 481.1 bits (1237), Expect = 6.6e-132
Identity = 256/288 (88.89%), Postives = 266/288 (92.36%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSL---N 60
           MATLESAIPIISQYISSSSSSKL    LPSAIKLRISFSSPLLS NPTT +SPL L   N
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  PSRNR--GGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTV 120
           PSRNR  GGR CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE FGQCGTV
Sbjct: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKP 180
           TDVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSFAT
Sbjct: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           REEAETALSSLEGKELMGRPLRLKFSER V + ETPKED  ESQ EES
Sbjct: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Clc10G01630 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-29
Identity = 95/326 (29.14%), Postives = 157/326 (48.16%), Query Frame = 0


Query: 2   ATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSRN 61
           A   S+    +  +SS S+S+L +   P + KL  +  +PL+            L+ +  
Sbjct: 15  AATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLI------------LHSNIR 74

Query: 62  RGGRLCSAVQEVSL----------------EEASEQNEDVNQKK----------KLYIFN 121
           R    C+A  E S                 EE  E  E+V ++K          +LY+ N
Sbjct: 75  RHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 134

Query: 122 LPWSFSVVDIKELFGQCGTVTDVEIIKQK-NGRSRGFAFVTMASPDEAQAAIHKYDSQEI 181
           LP++ +  ++ ++FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A+  ++S +I
Sbjct: 135 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 194

Query: 182 SGRVIKVEFAKRLKKPPPPKPPGPPPGE-----------------TVNKLYVSNLAWKVR 241
            GR +KV F           P  P  GE                 + +K+Y  NL W + 
Sbjct: 195 GGRTVKVNF-----------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 254

Query: 242 SSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLR 284
           S  L++ F +    + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR LR
Sbjct: 255 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 314

[Close]

BLAST of Clc10G01630 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.4e-29
Identity = 82/225 (36.44%), Postives = 133/225 (59.11%), Query Frame = 0


Query: 68  SAVQEVSLEEASEQNEDVN-QKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQK-N 127
           SA +E  +EE  E+ E  + +  +LY+ NLP+S +   + E+F + GTV +VEI+  +  
Sbjct: 92  SAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVT 151

Query: 128 GRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAK----RLKKPPPPKPPGPPPG 187
            RSRGFAFVTM S +EA+ AI  +D  ++ GR +KV F +      ++    K      G
Sbjct: 152 DRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQG 211

Query: 188 --ETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEA 247
             ++ +KLYV+NL+W + S  LR+ F++    ++A+V++D  SGRS G+GF++F++ E  
Sbjct: 212 FVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAM 271

Query: 248 ETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVS-ESQSEES 284
            +AL ++   EL GRPLRL  + +       P  + S E+ S+ S
Sbjct: 272 NSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPENDSDNS 316

[Close]

BLAST of Clc10G01630 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.2e-28
Identity = 68/193 (35.23%), Postives = 117/193 (60.62%), Query Frame = 0


Query: 72  EVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRG 131
           EV  +E  E+ ++  +  KL++ NLP+      +  LF Q G V   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 132 FAFVTMASPDEAQAAIHKYDSQEISGRVIKV-EFAKRLKKPPPPKPPGPPPGETVNKLYV 191
           F FVTM++ +EA+ A+  Y+  +++GR++ V + A+R ++P  P    P   E   ++YV
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERP----PRTFEQSYRIYV 238

Query: 192 SNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGK 251
            N+ W +  + L + FSE+   V+ARVV+D  +GRS G+GFV+ A+  E   A+++L+G+
Sbjct: 239 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQ 298

Query: 252 ELMGRPLRLKFSE 263
            L GR +R+  +E
Sbjct: 299 SLDGRTIRVNVAE 307

[Close]

BLAST of Clc10G01630 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-27
Identity = 85/258 (32.95%), Postives = 136/258 (52.71%), Query Frame = 0


Query: 16  SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSRNRGGRLCSAVQEV-S 75
           +S ++S   F+  PS++ L +S SS   S      ++    +            +++V  
Sbjct: 24  TSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTLSDFD-----------QIEDVED 83

Query: 76  LEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQK-NGRSRGFAF 135
            ++  E+  + +   K+++ NLP+S     + ELF + G V  VE+I  K  GRSRGF F
Sbjct: 84  GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGF 143

Query: 136 VTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPK---------PPGPPPGETV 195
           VTM+S +E +AA  +++  E+ GR ++V        PPP K           G    ++ 
Sbjct: 144 VTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRENSSFRGGSRGGGSFDSS 203

Query: 196 NKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALS 255
           N++YV NLAW V    L   FSE    V A+VV+D  SGRS G+GFV++++ EE   A+ 
Sbjct: 204 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 263

Query: 256 SLEGKELMGRPLRLKFSE 263
           SL+G +L GR +R+  +E
Sbjct: 264 SLDGVDLNGRAIRVSPAE 265

[Close]

BLAST of Clc10G01630 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.9e-26
Identity = 91/283 (32.16%), Postives = 136/283 (48.06%), Query Frame = 0


Query: 16  SSSSSSKLCFN--KLPSAIK--LRISFSSPLLSLNPTTPISPLSL----NPSRNRGGRLC 75
           S+SS +   FN   LP  +     +S  SP LS    +     S+    N   +R  R  
Sbjct: 4   SASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFARNV 63

Query: 76  SAVQEVSLEE------ASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEII 135
           +   E  +EE      A  + +  +   KL++ NLP++     + +LF   G V  VE+I
Sbjct: 64  AITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVI 123

Query: 136 KQK-NGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPP---- 195
             K  GRSRGF FVTM+S  E +AA  +++  E+ GR ++V        PPPPK      
Sbjct: 124 YDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAG-----PPPPKREDGFS 183

Query: 196 -----------------GPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFD 255
                            G     + N++YV NL+W V    L   FSE    V ARV++D
Sbjct: 184 RGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 243

Query: 256 SPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 263
             SGRS G+GFV++ + +E + A+ SL+G +L GR +R+  +E
Sbjct: 244 RDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAE 281

[Close]

BLAST of Clc10G01630 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.8e-136
Identity = 257/285 (90.18%), Postives = 271/285 (95.09%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSR 60
           MATLESA+PIIS Y+SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNP TPISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  N--RGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDV 120
           N   GGRLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+DV
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSDV 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGP 180
           EIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKR K+PPPPKPPGP
Sbjct: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           A+TALSSLEGKELMGRPLRLKFSER+VNE ETPKED+ ESQ EES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of Clc10G01630 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 490.3 bits (1261), Expect = 5.2e-135
Identity = 256/288 (88.89%), Postives = 271/288 (94.10%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSS---SKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLN 60
           M T+ES +PIIS YISSSSS   SKLCFNKLPS IKLRISFSSPLLSLNPTTPISP S N
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  PSRNRGG--RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTV 120
            SRNRGG  RLCSA+QEV+LEEASE+N+DVNQK+KLYIFNLPWS SVVDIKELFGQCGTV
Sbjct: 61  SSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKP 180
           +DVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 SDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGFVSFAT
Sbjct: 181 PGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           REEA+TALSSLEGKELMGRPLRLKFSERNVNE ETPKED+ ESQ EES
Sbjct: 241 REEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of Clc10G01630 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.3e-133
Identity = 255/285 (89.47%), Postives = 269/285 (94.39%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSR 60
           MATLESA+PIIS Y+SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNP TPISP+S N SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  N--RGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDV 120
           N   GGRLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+D 
Sbjct: 61  NPGGGGRLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVSD- 120

Query: 121 EIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGP 180
            IIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKR K+PPPPKPPGP
Sbjct: 121 -IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPPGP 180

Query: 181 PPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREE 240
           PPGETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATREE
Sbjct: 181 PPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATREE 240

Query: 241 AETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           A+TALSSLEGKELMGRPLRLKFSER+VNE ETPKED+ ESQ EES
Sbjct: 241 AQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

[Close]

BLAST of Clc10G01630 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 3.2e-132
Identity = 256/288 (88.89%), Postives = 266/288 (92.36%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSL---N 60
           MATLESAIPIISQYISSSSSSKL    LPSAIKLRISFSSPLLS NPTT +SPL L   N
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  PSRNR--GGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTV 120
           PSRNR  GGR CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE FGQCGTV
Sbjct: 61  PSRNRGGGGRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCGTV 120

Query: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKP 180
           TDVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKKPPPPKP
Sbjct: 121 TDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKP 180

Query: 181 PGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFAT 240
           PGPPPGETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSFAT
Sbjct: 181 PGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFAT 240

Query: 241 REEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           REEAETALSSLEGKELMGRPLRLKFSER V + ETPKED  ESQ EES
Sbjct: 241 REEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Clc10G01630 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 478.8 bits (1231), Expect = 1.6e-131
Identity = 258/294 (87.76%), Postives = 270/294 (91.84%), Query Frame = 0


Query: 1   MATLESAIPIISQYI------SSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPL 60
           MATLESAIPIISQYI      SSSSSSKL F+KLPSAIKLRISFSSPLLSLNPTT +SPL
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SL---NPSRNRGG--RLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELF 120
            L   NP RNRGG  R CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKK 180
           GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAI K+DSQEISGRVIKVEFAKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYG 240
           PPPPKPPGPPPGETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEES 284
           FVSFATREEAETALSSLEGKELMGRPLRLKFSER+V + ETPKED  ESQ EES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of Clc10G01630 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 271.2 bits (692), Expect = 9.6e-73
Identity = 158/292 (54.11%), Postives = 207/292 (70.89%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSSKLCFNKLPSAIK-----LRI-SFSSPLLSLNPTTPISPL 60
           MA LE+++ I S   SSSSS    F+K  S++K     LRI S  SP+ SL   +  S  
Sbjct: 1   MAVLEASLSIFSFSSSSSSSKPYLFSKRSSSLKLTALSLRIPSNLSPVFSLRSGSDNSRR 60

Query: 61  SLNPSRNRGGRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGT 120
            ++   +   +  SA +E S EE +E+ ++ N K+KL++FNLPWS SV DI ELFGQCGT
Sbjct: 61  LVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGT 120

Query: 121 VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPK 180
           V +VEII+QK+G++RGFAFVTMAS +EAQAAI K+D+ ++SGR+I V FA+R KKP P  
Sbjct: 121 VNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKS 180

Query: 181 P---PGPPPGETVNKLYVSNLAWKVRSSNLREFF-SENFNPVAARVVFDSPSGRSAGYGF 240
           P   P P PG+T +KLYVSNLAWK RS++LRE F + +FNPV+ARVVF  P GRS+GYGF
Sbjct: 181 PNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGF 240

Query: 241 VSFATREEAETALSSLEGKELMGRPLRLKFSERNVNEPETPKEDVSESQSEE 283
           VSFATREEAE A++ L GKE+MGRP+ LKFS R+ +E E      + + SE+
Sbjct: 241 VSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASED 292

[Close]

BLAST of Clc10G01630 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-32
Identity = 101/288 (35.07%), Postives = 154/288 (53.47%), Query Frame = 0


Query: 8   IPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSL-NPSRNRGGRL 67
           +P IS  I    S++   N   +     +S S+P L         P S+   SRN     
Sbjct: 6   LPGISLQILGHKSNQKNPNPNVAFTNHSLSLSTPSLCRLHRHATFPDSIPAKSRNLTSYF 65

Query: 68  CSAVQEVSLEEASEQN------EDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEI 127
            +  QE  LE +S  +      E+   K +L   N+PW+ +  DI+ LF + G+V D+E+
Sbjct: 66  STTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEM 125

Query: 128 IKQKNGRSRGFAFVTMASPDEAQAAIHKYDSQEISGRVIKVEFAKRLKKPPPPKPPGPPP 187
              K  R+RG  F+ MASP+EA  A+   +S E  GR +KV++AK  KK        P P
Sbjct: 126 SMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSP 185

Query: 188 GETVNKLYVSNLAWKVRSSNLREFF-SENFNPVAARVVFDSPSGRSAGYGFVSFATREEA 247
             T N L+V+NLA++ R+ +L+EFF ++  N V+  V+F     RS+GYGFVSF T+++A
Sbjct: 186 VPTFN-LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 245

Query: 248 ETALSSLEGKELMGRPLRL----KFSERNVNEPETPKEDVSESQSEES 284
           E AL   +GK+ +GRP+RL    +F +    E   P E+ +E +  +S
Sbjct: 246 EAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQS 292

[Close]

BLAST of Clc10G01630 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-32
Identity = 80/201 (39.80%), Postives = 122/201 (60.70%), Query Frame = 0


Query: 88  KKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIH 147
           K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ MASP+EA  A+ 
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 148 KYDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFF-S 207
             +S E  GR +KV++AK  KK        P P  T N L+V+NLA++ R+ +L+EFF +
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 152

Query: 208 ENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRL----KFSE 267
           +  N V+  V+F     RS+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +F +
Sbjct: 153 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 212

Query: 268 RNVNEPETPKEDVSESQSEES 284
               E   P E+ +E +  +S
Sbjct: 213 LQAKEGLQPPEEEAEEEPSQS 232

[Close]

BLAST of Clc10G01630 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 129.8 bits (325), Expect = 3.5e-30
Identity = 91/236 (38.56%), Postives = 128/236 (54.24%), Query Frame = 0


Query: 37  SFSSPLLSLNPTTPISPLSLNPSRNRGGRLCSAVQEVSLEEASEQNED---------VNQ 96
           S +  LL  N +TP   L  + S +R  R+ S    V LEE  E+ +D            
Sbjct: 26  SSNQTLLRFNFSTPKPLLISSRSCSRRFRVLSETITVKLEE--EEKDDGASAVLDPPAAV 85

Query: 97  KKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDEAQAAI 156
             KLY  NLP++     + ++         VE++  ++ G+SRGFAFVTM++ ++    I
Sbjct: 86  NTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIII 145

Query: 157 HKYDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSSNLREFFS 216
              D  E  GR +KV FA    KP P K P  P  ET +KL+V NL+W V S +L   F 
Sbjct: 146 DNLDGTEYLGRALKVNFA---DKPKPNKEPLYP--ETEHKLFVGNLSWTVTSESLAGAFR 205

Query: 217 ENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 263
           E  + V ARVVFD  +GRS GYGFV ++++ E ETAL SL+G EL GR +R+  ++
Sbjct: 206 ECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

[Close]

BLAST of Clc10G01630 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 129.8 bits (325), Expect = 3.5e-30
Identity = 95/326 (29.14%), Postives = 157/326 (48.16%), Query Frame = 0


Query: 2   ATLESAIPIISQYISSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPTTPISPLSLNPSRN 61
           A   S+    +  +SS S+S+L +   P + KL  +  +PL+            L+ +  
Sbjct: 15  AATASSAATFNPLLSSHSNSQLFYRFTPKSFKLVANCPNPLI------------LHSNIR 74

Query: 62  RGGRLCSAVQEVSL----------------EEASEQNEDVNQKK----------KLYIFN 121
           R    C+A  E S                 EE  E  E+V ++K          +LY+ N
Sbjct: 75  RHRFFCAAETEASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGN 134

Query: 122 LPWSFSVVDIKELFGQCGTVTDVEIIKQK-NGRSRGFAFVTMASPDEAQAAIHKYDSQEI 181
           LP++ +  ++ ++FG+ GTV DV+I+  K   RSRGF FVTM S +EA+ A+  ++S +I
Sbjct: 135 LPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 194

Query: 182 SGRVIKVEFAKRLKKPPPPKPPGPPPGE-----------------TVNKLYVSNLAWKVR 241
            GR +KV F           P  P  GE                 + +K+Y  NL W + 
Sbjct: 195 GGRTVKVNF-----------PEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLT 254

Query: 242 SSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLR 284
           S  L++ F +    + A+V+++  +GRS G+GF+SF + E  ++AL+++ G E+ GR LR
Sbjct: 255 SQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALR 314

The following BLAST results are available for this feature:

BLAST of Clc10G01630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448669.1	5.7e-136	90.18	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
XP_038904114.1	4.9e-135	93.03	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_011650340.1	1.1e-134	88.89	29 kDa ribonucleoprotein A, chloroplastic [Cucumis sativus] >KGN55743.1 hypothet...	[more]
KAA0053033.1	2.7e-133	89.47	28 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK11488.1 28 kDa ribonucle...	[more]
XP_022923294.1	6.6e-132	88.89	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]	[more]

BLAST of Clc10G01630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	4.9e-29	29.14	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19684	6.4e-29	36.44	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	9.2e-28	35.23	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08935	4.6e-27	32.95	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
Q9ZUU4	3.9e-26	32.16	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]

BLAST of Clc10G01630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK84	2.8e-136	90.18	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A0A0L1U2	5.2e-135	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A5A7UAR3	1.3e-133	89.47	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A6J1E5Z7	3.2e-132	88.89	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KZ42	1.6e-131	87.76	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]

BLAST of Clc10G01630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	9.6e-73	54.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	1.3e-32	35.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	1.7e-32	39.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G60000.1	3.5e-30	38.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	3.5e-30	29.14	chloroplast RNA-binding protein 33	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 90..162 e-value: 3.3E-26 score: 103.1 coord: 186..259 e-value: 1.3E-21 score: 87.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 187..257 e-value: 1.6E-17 score: 63.1 coord: 91..160 e-value: 4.3E-18 score: 64.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 185..263 score: 18.018063
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 89..166 score: 18.939054
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 58..168 e-value: 2.8E-28 score: 100.8 coord: 169..274 e-value: 7.3E-24 score: 86.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 256..277
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..274
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 1..274
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 170..265
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 81..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G01630.1	Clc10G01630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding