Clc10G01060 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G01060
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr10: 970966 .. 971304 (-)
RNA-Seq Expression	Clc10G01060
Synteny	Clc10G01060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTGCTTGAAGAAGACGCTAACCAAACTCACTGCATTTGTCCGCCGCTGCCTCGTTCGCCGGCGACGTTCTCGACGGCCGAGATCATTCGTTTCCGACGATCGGATGATAGAGATACGGATTGTCTTCGAAGAGCAGAGGAGAATCGCTGAGAGTGCTGCGAATTCAAGCAGCGGAAGGTGGGAAGTGGATGTCGATCAGCGAGCGGAGATTTTCATTGATGATTTCCGCCGTCAATTGAGGTTAGAGAGACAGATTTCTTTGCATTATAGAGTTGAAACAGAGTATGAAGAGAGATGGCCGCCACCGCCGCCGATTTCGCCGCCGATTTGA

mRNA sequence

ATGGCTTCTTGCTTGAAGAAGACGCTAACCAAACTCACTGCATTTGTCCGCCGCTGCCTCGTTCGCCGGCGACGTTCTCGACGGCCGAGATCATTCGTTTCCGACGATCGGATGATAGAGATACGGATTGTCTTCGAAGAGCAGAGGAGAATCGCTGAGAGTGCTGCGAATTCAAGCAGCGGAAGGTGGGAAGTGGATGTCGATCAGCGAGCGGAGATTTTCATTGATGATTTCCGCCGTCAATTGAGGTTAGAGAGACAGATTTCTTTGCATTATAGAGTTGAAACAGAGTATGAAGAGAGATGGCCGCCACCGCCGCCGATTTCGCCGCCGATTTGA

Coding sequence (CDS)

ATGGCTTCTTGCTTGAAGAAGACGCTAACCAAACTCACTGCATTTGTCCGCCGCTGCCTCGTTCGCCGGCGACGTTCTCGACGGCCGAGATCATTCGTTTCCGACGATCGGATGATAGAGATACGGATTGTCTTCGAAGAGCAGAGGAGAATCGCTGAGAGTGCTGCGAATTCAAGCAGCGGAAGGTGGGAAGTGGATGTCGATCAGCGAGCGGAGATTTTCATTGATGATTTCCGCCGTCAATTGAGGTTAGAGAGACAGATTTCTTTGCATTATAGAGTTGAAACAGAGTATGAAGAGAGATGGCCGCCACCGCCGCCGATTTCGCCGCCGATTTGA

Protein sequence

MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDDRMIEIRIVFEEQRRIAESAANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISLHYRVETEYEERWPPPPPISPPI

Homology

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BLAST of Clc10G01060 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-21
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDDRMIEIRIVFEEQRRIAES------ 60
           MAS LKK L KLTA VR CLV RRRS+R  SF SDDR + IRIV E+Q RIAE+      
Sbjct: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKL 67

Query: 61  --AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRV---ETEYEERWPP 105
             A++S  G +E DVDQRAEIFI++FRRQLRLERQISL   +YRV   ETEYE+  PP
Sbjct: 68  ERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125

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BLAST of Clc10G01060 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 70/118 (59.32%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVS-DDRMIEIRIVFEEQRRIAES----- 60
           MAS L+K L KL A +R CL+ R+RSRR  SF S DD+ + IRIV E+Q RIAES     
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 61  ---AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRV---ETEYEERWP 104
              A++S  G +E DVDQRAEIFI++FRRQLRLERQISL   +YRV   ETEYE+R P
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

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BLAST of Clc10G01060 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVS-DDRMIEIRIVFEEQRRIAES----- 60
           MAS L+K L KL A +R CL+ R+RSRR  SF S DD+ + IRIV E+Q RIAES     
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  ---AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL 91
              A++S  G +E DVDQRAEIFI++FRRQLRLERQISL
Sbjct: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISL 106

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BLAST of Clc10G01060 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 0


Query: 5   LKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDDRMIEIRIVFEEQR-------RIAESAAN 64
           LKK+  KLTAF+R C+ RR+ SRR RSF SDDR   +R   E++R       R  E A++
Sbjct: 12  LKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVENRSVRKLERASS 71

Query: 65  SSSGRWEVDVDQRAEIFIDDFRRQLRLERQISLHYRV------ETEYEERWPPPPPI 109
           +S   +E DVD+R++IFID F RQLRLERQISL  R       ETE EE+ PP P I
Sbjct: 72  ASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEEKSPPYPSI 128

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BLAST of Clc10G01060 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.3 bits (207), Expect = 7.1e-13
Identity = 58/113 (51.33%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 5   LKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDDRMIEIRIVFEEQR-------RIAESAAN 64
           +KK LTKLTAFVR C V R  SRR RSF SD R   +R +  ++        R  E   +
Sbjct: 12  MKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGES 71

Query: 65  SSSGRWEVDVDQRAEIFIDDFRRQLRLERQISLHYRV------ETEYEERWPP 105
           S +G  E DVDQRA+IFID+FRRQL LERQISL  R       E +YE R PP
Sbjct: 72  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPP 124

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BLAST of Clc10G01060 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 74/118 (62.71%), Postives = 85/118 (72.03%), Query Frame = 0


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVSDDRMIEIRIVFEEQRRIAES------ 60
           MAS LKK L KLTA VR CLV RRRS+R  SF SDDR + IRIV E+Q RIAE+      
Sbjct: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKL 67

Query: 61  --AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRV---ETEYEERWPP 105
             A++S  G +E DVDQRAEIFI++FRRQLRLERQISL   +YRV   ETEYE+  PP
Sbjct: 68  ERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125

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BLAST of Clc10G01060 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 70/118 (59.32%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRSRRPRSFVS-DDRMIEIRIVFEEQRRIAES----- 60
           MAS L+K L KL A +R CL+ R+RSRR  SF S DD+ + IRIV E+Q RIAES     
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  ---AANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRV---ETEYEERWP 104
              A++S  G +E DVDQRAEIFI++FRRQLRLERQISL   +YRV   ETEYE+R P
Sbjct: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Clc10G01060 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.8e-12
Identity = 58/122 (47.54%), Postives = 74/122 (60.66%), Query Frame = 0


Query: 5   LKKTLTKLTAFVR----RCLVRRRRSRRPRSFVSDDRMIEIRIVFEEQR-------RIAE 64
           LKK + K+TA +R     CL RRR S R RSF   DR + +R   E++        R  E
Sbjct: 12  LKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEEIGENCSMRRLE 71

Query: 65  SAANSSSGRWEVDVDQRAEIFIDDFRRQLRLERQISL---HYRVE---TEYEERWPPPPP 110
            A++   G  E DVD+R++IFID+F R+LRLERQISL   +YR+    TE EER PPPPP
Sbjct: 72  RASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGTEDEERSPPPPP 131

[Close]

BLAST of Clc10G01060 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 59/121 (48.76%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 1   MASCLKKTLTKLTAFVRRCLVRRRRS-RRPRSFVSDDRMIEIRIVFEEQRRIAESAANSS 60
           MA  L++TL KL AF+R CL+ RRRS  R R+ + DD+                S+   S
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDDQT-------ARNLERDSSSRYES 60

Query: 61  SGRWEVDVDQRAEIFIDDFRRQLRLERQISLHYRV--------ETEYEERWPPPPPISPP 113
              +E DVD RAEIFI++FRRQLRLERQISL  R+        ET+YEE  PPPPP  PP
Sbjct: 61  CEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPP-PPP 113

The following BLAST results are available for this feature:

BLAST of Clc10G01060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052985.1	2.4e-21	62.71	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
XP_011652707.1	3.3e-18	59.32	uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
KAE8650012.1	3.4e-15	60.61	hypothetical protein Csa_009473 [Cucumis sativus]	[more]
KAG6596691.1	1.7e-14	51.28	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015798.1	7.1e-13	51.33	hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc10G01060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G01060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHZ5	1.2e-21	62.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L4Z8	1.6e-18	59.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A6J1CW64	3.8e-12	47.54	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0L6A3	1.4e-11	48.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1	[more]

BLAST of Clc10G01060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 66..90 e-value: 8.0E-8 score: 31.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G01060.1	Clc10G01060.1	mRNA