Clc09G22920 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G22920
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionmRNA decay activator protein ZFP36L2-like isoform X2
LocationClcChr09: 36261970 .. 36264302 (+)
RNA-Seq ExpressionClc09G22920
SyntenyClc09G22920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCGTCAAGGAAAGAGGAGCTCCAAAACACCCATTATCAAAGGCCTAAACGCTTCGGTTCGACCGATCAACATTCAAATGGACAATCACTTGGTAATTGGGGGAACCAGACACTATCACCAGGAAACAAACTGTAAAAGTCCGACGATCATAGATCGTTACACTATTATGAATCACTATGCTAGCAGCACTTCTGGAAGCAATAGCTTTAGTTCTCGGGGTGCAGGATCGCCGTTATCACCACTTTCGGCTATTGAGAATTTGGAAACACCGCGTGTAAGGTCTCCACAAATCTATGGAACCCCGGTGAAGGTCGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAATTCAATCCCTGGAGGAGCGAAGACAGTGAGGTCTCCCTTAGATTCTGGAAGTGGTGGAGGTTTGTCATCAGGCAAAAATCAATACAGAACAGACATTTGCCGCTACTGGGAGGATTCTGGAAGCTGCCGCTTTGGCCACAAATGCCAGGTTAGTTATTTCGACCCCACCATAATGATCGGATCTGAATTATTGGCTCCGCGAATTTATTGGCCACAATGTGGTATCTTTGTTTATTGCTTAAAAGACACCTTTCCTCTGCCTTGAGATTTGATTGCTAATGAGACAAATGGATAAAAAAGATATTTACTATTTCAAGGAATAGTCCGATTAAAGATTTGCCCTTCCTGTTCAAGTTTAATGGGTGAACTTTTAGACTGAATTATTTATTTATTATTTAATGTGGGCTAATTTTCCATTTATTCCTATTTCATGTGGGTAGATTGAATTTATTTATTCTTTAAAATAGCTTGATTGAAATAAATTGACGCATTAAGAGAGTGATACATGATGAGTCAATGTCTCTTAGGCAAGGTTTTATGAGAAAGTTCGGAGGCTGATTCAAGGATGGAATATATATCCCACTCCCAATTATGTTTAGAATTTGGTCTCAGACAATGAACTCAGTTCAAATTAGTTTTTATAGATAGAGCGAAATATTAGGTTGGCTGCCAAAATTGATGCACTTGTGTAATATCACACCAAGTTATTAGATTAGCAGATAAATGAACCTATACCTTTTTCAAAAGTTGGATTAATCATGGACTCTGGCATCCCCGACATTCCCTTTCAGTTGTTGGATTGAATACCAACATTGAGTTTATTTTTTGGACCATTTCTCGATTTGTGTGTCATCCTTGCGCAGGGACCAACATTGAGTTTGTTAGAGCATCATTATTCATGACACGAATTCAAAGCTAAATAAAACACAACACAACTAACTTCCAGTATCTATCAATCAACGACATCGTGTGCTCTAGATTTCTAATAATGGATATTATTCAATTTCTTTGGTATTATCATTCAATCTTGGGGGACGGGAACTTGGGATTGGATCCTCCTATTTAATACTTTTAAGTAATTAGGTTGGCTGATTTTATTCCAAGAATAGGACCAAAAGCTTGCATTTCTCAATTTTTTTTTTTTATGATCCATATATAAGCTAAAAACTTTAAACTTGATAGAATTTGAGTCCAATGATCTTAACGGTAAGTAATTAAATATTTTCTTTAGTTACTCACTTCATTATCCATTCACCGAAAAGTTTGGGGTCCTTTGTAATTTATTCTGTAATTTATGGTATATATAGAAAAAAAAAAGTTTGTAATTAAAACCTCAACTATTTTGACACCGTAAAACTATCATTAAACTCAAAAGTTTAGCGTTATATGTTAAATTGTGATTTGCATGTCAGAGCATGTTAAATTGATGATATGCCTTCTCTGTTTACAGTTTGCGCATGGAAAGGAGGACCTACGGCCAGGTCGTTTACCAGTTAGAACCAAGCCTAAGGTACCATTGACATCTGATAAATTAAATATACTGCAGGTTTTGTTAGGATAAAAGACACTTTTAGATTTGCATATTCTTCGCTACTACAGTTCAATGAAGCGTATGGTCTCAAGTCTCGCAACAGTCATTCACTAACAGGAATAGCTGCAACAAAAACACAATCAAACTCAGTAGATACAATCACCAAAACTGAAATTAGCAAAAGAGGTGTTACTACAATGCCGTCCTCGAATTCAGTACGTCACATGAACATTAAGCCAAGCCTTATTTCCACCATTTCCATCATTGATTGGTCACCTGAAGATGATGGCATTAAAATTGTTGTCCCCAAAACAGAGTCCACAAAAAGAGAAGATGTAAACCAACACATCCATGGAGTTCTTTATGGTTCCACCACTGAGATGACCAAAAAAAGACTCCCAGTTTTCACTCAACTCTGCTCTGGAAAACTCCAACAAGAATAA

mRNA sequence

ATGGAAGATCGTCAAGGAAAGAGGAGCTCCAAAACACCCATTATCAAAGGCCTAAACGCTTCGGTTCGACCGATCAACATTCAAATGGACAATCACTTGGTAATTGGGGGAACCAGACACTATCACCAGGAAACAAACTGTAAAAGTCCGACGATCATAGATCGTTACACTATTATGAATCACTATGCTAGCAGCACTTCTGGAAGCAATAGCTTTAGTTCTCGGGGTGCAGGATCGCCGTTATCACCACTTTCGGCTATTGAGAATTTGGAAACACCGCGTGTAAGGTCTCCACAAATCTATGGAACCCCGGTGAAGGTCGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAATTCAATCCCTGGAGGAGCGAAGACAGTGAGGTCTCCCTTAGATTCTGGAAGTGGTGGAGGTTTGTCATCAGGCAAAAATCAATACAGAACAGACATTTGCCGCTACTGGGAGGATTCTGGAAGCTGCCGCTTTGGCCACAAATGCCAGTTTGCGCATGGAAAGGAGGACCTACGGCCAGGTCGTTTACCAGTTAGAACCAAGCCTAAGTTCAATGAAGCGTATGGTCTCAAGTCTCGCAACAGTCATTCACTAACAGGAATAGCTGCAACAAAAACACAATCAAACTCAGTAGATACAATCACCAAAACTGAAATTAGCAAAAGAGGTGTTACTACAATGCCGTCCTCGAATTCAGTACGTCACATGAACATTAAGCCAAGCCTTATTTCCACCATTTCCATCATTGATTGGTCACCTGAAGATGATGGCATTAAAATTGTTGTCCCCAAAACAGAGTCCACAAAAAGAGAAGATGTAAACCAACACATCCATGGAGTTCTTTATGGTTCCACCACTGAGATGACCAAAAAAAGACTCCCAGTTTTCACTCAACTCTGCTCTGGAAAACTCCAACAAGAATAA

Coding sequence (CDS)

ATGGAAGATCGTCAAGGAAAGAGGAGCTCCAAAACACCCATTATCAAAGGCCTAAACGCTTCGGTTCGACCGATCAACATTCAAATGGACAATCACTTGGTAATTGGGGGAACCAGACACTATCACCAGGAAACAAACTGTAAAAGTCCGACGATCATAGATCGTTACACTATTATGAATCACTATGCTAGCAGCACTTCTGGAAGCAATAGCTTTAGTTCTCGGGGTGCAGGATCGCCGTTATCACCACTTTCGGCTATTGAGAATTTGGAAACACCGCGTGTAAGGTCTCCACAAATCTATGGAACCCCGGTGAAGGTCGATGAAGAAGTGATAGTAATGGATGGGATTTTGATCAATTCAATCCCTGGAGGAGCGAAGACAGTGAGGTCTCCCTTAGATTCTGGAAGTGGTGGAGGTTTGTCATCAGGCAAAAATCAATACAGAACAGACATTTGCCGCTACTGGGAGGATTCTGGAAGCTGCCGCTTTGGCCACAAATGCCAGTTTGCGCATGGAAAGGAGGACCTACGGCCAGGTCGTTTACCAGTTAGAACCAAGCCTAAGTTCAATGAAGCGTATGGTCTCAAGTCTCGCAACAGTCATTCACTAACAGGAATAGCTGCAACAAAAACACAATCAAACTCAGTAGATACAATCACCAAAACTGAAATTAGCAAAAGAGGTGTTACTACAATGCCGTCCTCGAATTCAGTACGTCACATGAACATTAAGCCAAGCCTTATTTCCACCATTTCCATCATTGATTGGTCACCTGAAGATGATGGCATTAAAATTGTTGTCCCCAAAACAGAGTCCACAAAAAGAGAAGATGTAAACCAACACATCCATGGAGTTCTTTATGGTTCCACCACTGAGATGACCAAAAAAAGACTCCCAGTTTTCACTCAACTCTGCTCTGGAAAACTCCAACAAGAATAA

Protein sequence

MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRYTIMNHYASSTSGSNSFSSRGAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDSGSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAYGLKSRNSHSLTGIAATKTQSNSVDTITKTEISKRGVTTMPSSNSVRHMNIKPSLISTISIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTKKRLPVFTQLCSGKLQQE
Homology
BLAST of Clc09G22920 vs. NCBI nr
Match: XP_038897010.1 (uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 uncharacterized protein LOC120085195 [Benincasa hispida])

HSP 1 Score: 547.4 bits (1409), Expect = 8.3e-152
Identity = 277/314 (88.22%), Postives = 290/314 (92.36%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRYTIMN 60
           MEDRQGKRS+KT IIKGLNASVRPINIQMDNHLVIGGTRHYHQETNC+SPTI+DRYTIMN
Sbjct: 1   MEDRQGKRSTKTSIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCRSPTIVDRYTIMN 60

Query: 61  HYASSTSGSNSFSSRGAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASSTSG NSF SRGAGSPLSPLSAIENLETP VRSPQIYGTPVKVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGCNSFGSRGAGSPLSPLSAIENLETPPVRSPQIYGTPVKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SIPGGAKT+RSPLDSGSGGG SS KNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 
Sbjct: 121 SIPGGAKTMRSPLDSGSGGGFSSAKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPS 180

Query: 181 RLPVRTKPKFNEAYGLKSRNSHSLTGIAATKTQSNSVDTITKTEISKR-GVTTMPSSNSV 240
           R+PVRTKPKF+E YG K RNSHSLTGIAAT T SN +DT  KTE+S+R  +TT  SS SV
Sbjct: 181 RIPVRTKPKFSETYGPKFRNSHSLTGIAAT-THSNLIDTFNKTELSRREDLTTTTSSTSV 240

Query: 241 RHMNIKPSLISTISIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTKKRL 300
           RHMN KPSLI TISIIDWSPEDDGIKIVVPKTE+TKREDVNQ+IHGVLYGSTTE TKKRL
Sbjct: 241 RHMNTKPSLIPTISIIDWSPEDDGIKIVVPKTETTKREDVNQYIHGVLYGSTTERTKKRL 300

Query: 301 PVFTQLCSGKLQQE 314
           PVFTQLCS KLQQE
Sbjct: 301 PVFTQLCSEKLQQE 313

BLAST of Clc09G22920 vs. NCBI nr
Match: XP_004148935.1 (uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharacterized protein LOC101215865 [Cucumis sativus] >XP_031744249.1 uncharacterized protein LOC116404958 [Cucumis sativus] >XP_031744250.1 uncharacterized protein LOC116404958 [Cucumis sativus] >KAE8645918.1 hypothetical protein Csa_011889 [Cucumis sativus])

HSP 1 Score: 503.8 bits (1296), Expect = 1.0e-138
Identity = 260/317 (82.02%), Postives = 283/317 (89.27%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRYTIMN 60
           MEDRQGKRSSKT IIKGLNAS+RP+NIQMDNHLVIGGTRHYHQETNCKSPTI+D Y IMN
Sbjct: 1   MEDRQGKRSSKTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 61  HYASSTSGSNSFSSRGAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASSTSGSNSF SRGAG  LSPLSAIENLETP +RSPQIYGTP+KVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSG+CRFG+KCQFAHGKEDLRPG
Sbjct: 121 SIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLRPG 180

Query: 181 RLPVRTKPKFNEAYGLKSRNSHSLTGIAATKT---QSNSVDTITKTEISKRGVTTMPSSN 240
           RLPVRTK KF+E YG K RN+HSLTGIAAT T    SN VDTITKTE+SKRG+T  P+S+
Sbjct: 181 RLPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLT--PTSS 240

Query: 241 SVR-HMNIKPSLISTISIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTK 300
           +++ H N  P+LISTISII+WSPEDDGIKI VP TESTKREDVNQHIH VLYGSTTE TK
Sbjct: 241 TLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTERTK 300

Query: 301 KRLPVFTQLCSGKLQQE 314
           KRLPVF Q+CS +LQ+E
Sbjct: 301 KRLPVFVQICSEELQEE 312

BLAST of Clc09G22920 vs. NCBI nr
Match: TYK07952.1 (tristetraprolin-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 492.3 bits (1266), Expect = 3.2e-135
Identity = 259/327 (79.20%), Postives = 278/327 (85.02%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRYTIMN 60
           MEDRQ KRSS+T IIKGLNAS+RP+NIQMDNHLVIGGTRHYHQETNCKSPTI+D Y IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 61  HYASSTSGSNSFSSRGAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASSTSGSNSF SRGAG  LSPLSAIENLETP V+SPQIYGTP+KVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPVKSPQIYGTPMKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSGSCRFG+KCQFAHGKEDLRPG
Sbjct: 121 SIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPG 180

Query: 181 RLPVRTKPKFNEAYGLKSRNSHSLTGIAATKT---QSNSVDTITKTEISKRGVTTMPSSN 240
           RLPVRTK KF+E YG K RN+HSL+GI+AT T    SN VDTITKTE+SKR   T  SS+
Sbjct: 181 RLPVRTKTKFSETYGSKFRNNHSLSGISATTTTQSNSNLVDTITKTELSKREGLTPTSSS 240

Query: 241 SVRHMNIKPSLISTISII-----------DWSPEDDGIKIVVPKTESTKREDVNQHIHGV 300
             R  N  P+LISTISII           DWSPEDDGIKIVVP TESTKREDVNQHIH V
Sbjct: 241 LKRQTNTNPTLISTISIIDWSPEDDDGIKDWSPEDDGIKIVVPGTESTKREDVNQHIHEV 300

Query: 301 LYGSTTEMTKKRLPVFTQLCSGKLQQE 314
           LYGSTTE TKKRLPVF+QLCS +LQ+E
Sbjct: 301 LYGSTTERTKKRLPVFSQLCSEELQEE 324

BLAST of Clc09G22920 vs. NCBI nr
Match: XP_022154583.1 (uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncharacterized protein LOC111021811 [Momordica charantia])

HSP 1 Score: 428.7 bits (1101), Expect = 4.3e-116
Identity = 235/364 (64.56%), Postives = 265/364 (72.80%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRYT--- 60
           ME RQGKRSSKT IIKGLN +V PINIQMDNHLVIGGT HYHQETNCKSPT++DRY+   
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYSEKL 60

Query: 61  ------------------------------------------IMNHYASSTSGSNSFSSR 120
                                                     IMNHYASSTS S+SF SR
Sbjct: 61  DRSTSIVRYFRSRSPVIGKLPSVGDTFSTPVPDVINANYRSAIMNHYASSTSRSSSFGSR 120

Query: 121 GAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
           G GS LSPLSAIENLETP  RSPQIYGTPVKVDEEVIVMDGILI+S+PGGAKT+RS  +S
Sbjct: 121 GGGSSLSPLSAIENLETPTARSPQIYGTPVKVDEEVIVMDGILISSVPGGAKTMRSASES 180

Query: 181 GSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
            +GGG  SGKN YRTDICR WEDSGSCR+GHKCQFAHGKE+LRP RLPV+ KPK +++Y 
Sbjct: 181 VTGGGSLSGKNLYRTDICRSWEDSGSCRYGHKCQFAHGKEELRPARLPVKNKPKVSDSYC 240

Query: 241 ----GLKSRNSHSLTGIAATKTQSNSVDTITKTEISK-RGVTTMPSSNSVRHMNIKPSLI 300
                 K  +SH+L   A T + S  +DTI  +E+S+  G  TM    S+RHMN KPSLI
Sbjct: 241 TTYGHSKFCDSHAL---AVTTSHSYVIDTINNSEVSRSEGGKTM----SIRHMNTKPSLI 300

Query: 301 STISIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTKKRLPVFTQLCSGK 314
           STISI+DWSPEDDGIKIV+P ++STKREDVNQ+IH VLYGST E TKKRLPVFTQLCS K
Sbjct: 301 STISIVDWSPEDDGIKIVLPNSKSTKREDVNQYIHEVLYGSTNERTKKRLPVFTQLCSEK 357

BLAST of Clc09G22920 vs. NCBI nr
Match: XP_023536031.1 (uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023536040.1 uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 403.3 bits (1035), Expect = 1.9e-108
Identity = 227/360 (63.06%), Postives = 256/360 (71.11%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRY---- 60
           MEDRQGKRSSK  IIKGLNA+VRPI IQMDNHLVIGGT HYHQETN K PTI+DRY    
Sbjct: 1   MEDRQGKRSSKAAIIKGLNATVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  -----------------------------------------TIMNHYASSTSGSNSFSSR 120
                                                    +I+NH+ASSTSGS+SF SR
Sbjct: 61  ERSTPIVSYFRSRSPVVGKLPSVGDTFSTPVADVINANYRSSIINHFASSTSGSSSFGSR 120

Query: 121 GAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
             GS LSPLSAIENLET  VRSPQIYGTP+KV EEVIVMD ILI+S+ GGAKT++S LDS
Sbjct: 121 RGGSSLSPLSAIENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
           GSGGG S  KNQYRTDICR WEDSGSCRFGHKCQFAHGKE+LRP  LP++TKPKF E Y 
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPLKTKPKFGEPYL 240

Query: 241 --GLKSRNSHSLTGIAATKTQSNSVDTITKTEISKRGVTTMPSSNSVRHMNIKPSLISTI 300
             GLKSRN+HSLTGIAAT TQSNS+D   KTE+S+RG     S NS+ ++N         
Sbjct: 241 THGLKSRNNHSLTGIAAT-TQSNSLDITFKTELSRRG----HSINSIHNLN--------- 300

Query: 301 SIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTKKRLPVFTQLCSGKLQQ 313
              DWSPEDD I++VVP+T+ST R DV+QHIH VLYGSTTE TKKRL VF QLCS + ++
Sbjct: 301 --TDWSPEDDDIEVVVPETKST-RGDVDQHIHEVLYGSTTERTKKRLLVFVQLCSSQQEE 343

BLAST of Clc09G22920 vs. ExPASy Swiss-Prot
Match: P47974 (mRNA decay activator protein ZFP36L2 OS=Homo sapiens OX=9606 GN=ZFP36L2 PE=1 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-07
Identity = 21/41 (51.22%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 138 GGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 179
           GGG      +Y+T++CR +E+SG+C++G KCQFAHG  +LR
Sbjct: 144 GGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 184

BLAST of Clc09G22920 vs. ExPASy Swiss-Prot
Match: Q5ISE2 (mRNA decay activator protein ZFP36L3 OS=Mus musculus OX=10090 GN=Zfp36l3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 137 SGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 179
           SG    +   +Y+T++CR +E+SG C++GHKCQFAHG  +LR
Sbjct: 112 SGSSSLATSERYKTELCRPFEESGICKYGHKCQFAHGYRELR 153

BLAST of Clc09G22920 vs. ExPASy Swiss-Prot
Match: P47979 (Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=zfs1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-06
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 132 PLDSGSGGGLS-SGKNQ-YRTDICRYWEDSGSCRFGHKCQFAHGKEDLR-PGRLP 184
           P  SGS  G++ +GK   Y+T+ C+ W+ SG+CR+G KCQFAHG ++L+ P R P
Sbjct: 309 PHGSGSSNGVAPNGKRALYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHP 363

BLAST of Clc09G22920 vs. ExPASy Swiss-Prot
Match: P47980 (Protein TIS11 OS=Drosophila melanogaster OX=7227 GN=Tis11 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-06
Identity = 24/59 (40.68%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 146 NQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAYGLKSRNSHSL 205
           ++Y+T++CR +E++G C++G KCQFAHG  +LR     V   PK+   Y    R  HS+
Sbjct: 134 SRYKTELCRPFEEAGECKYGEKCQFAHGSHELR----NVHRHPKYKTEY---CRTFHSV 185

BLAST of Clc09G22920 vs. ExPASy Swiss-Prot
Match: P23949 (mRNA decay activator protein ZFP36L2 OS=Mus musculus OX=10090 GN=Zfp36l2 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 4.9e-06
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 138 GGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 179
           G G      +Y+T++CR +E+SG+C++G KCQFAHG  +LR
Sbjct: 146 GSGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHELR 186

BLAST of Clc09G22920 vs. ExPASy TrEMBL
Match: A0A5D3C9H3 (Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00710 PE=4 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.5e-135
Identity = 259/327 (79.20%), Postives = 278/327 (85.02%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRYTIMN 60
           MEDRQ KRSS+T IIKGLNAS+RP+NIQMDNHLVIGGTRHYHQETNCKSPTI+D Y IMN
Sbjct: 1   MEDRQSKRSSRTSIIKGLNASIRPMNIQMDNHLVIGGTRHYHQETNCKSPTIVDCYNIMN 60

Query: 61  HYASSTSGSNSFSSRGAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILIN 120
           HYASSTSGSNSF SRGAG  LSPLSAIENLETP V+SPQIYGTP+KVDEEVIVMDGILI+
Sbjct: 61  HYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPVKSPQIYGTPMKVDEEVIVMDGILIS 120

Query: 121 SIPGGAKTVRSPLDSGSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPG 180
           SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSGSCRFG+KCQFAHGKEDLRPG
Sbjct: 121 SIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGSCRFGNKCQFAHGKEDLRPG 180

Query: 181 RLPVRTKPKFNEAYGLKSRNSHSLTGIAATKT---QSNSVDTITKTEISKRGVTTMPSSN 240
           RLPVRTK KF+E YG K RN+HSL+GI+AT T    SN VDTITKTE+SKR   T  SS+
Sbjct: 181 RLPVRTKTKFSETYGSKFRNNHSLSGISATTTTQSNSNLVDTITKTELSKREGLTPTSSS 240

Query: 241 SVRHMNIKPSLISTISII-----------DWSPEDDGIKIVVPKTESTKREDVNQHIHGV 300
             R  N  P+LISTISII           DWSPEDDGIKIVVP TESTKREDVNQHIH V
Sbjct: 241 LKRQTNTNPTLISTISIIDWSPEDDDGIKDWSPEDDGIKIVVPGTESTKREDVNQHIHEV 300

Query: 301 LYGSTTEMTKKRLPVFTQLCSGKLQQE 314
           LYGSTTE TKKRLPVF+QLCS +LQ+E
Sbjct: 301 LYGSTTERTKKRLPVFSQLCSEELQEE 324

BLAST of Clc09G22920 vs. ExPASy TrEMBL
Match: A0A6J1DKP7 (uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021811 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 2.1e-116
Identity = 235/364 (64.56%), Postives = 265/364 (72.80%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRYT--- 60
           ME RQGKRSSKT IIKGLN +V PINIQMDNHLVIGGT HYHQETNCKSPT++DRY+   
Sbjct: 1   MEGRQGKRSSKTSIIKGLNVTVPPINIQMDNHLVIGGTGHYHQETNCKSPTMLDRYSEKL 60

Query: 61  ------------------------------------------IMNHYASSTSGSNSFSSR 120
                                                     IMNHYASSTS S+SF SR
Sbjct: 61  DRSTSIVRYFRSRSPVIGKLPSVGDTFSTPVPDVINANYRSAIMNHYASSTSRSSSFGSR 120

Query: 121 GAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
           G GS LSPLSAIENLETP  RSPQIYGTPVKVDEEVIVMDGILI+S+PGGAKT+RS  +S
Sbjct: 121 GGGSSLSPLSAIENLETPTARSPQIYGTPVKVDEEVIVMDGILISSVPGGAKTMRSASES 180

Query: 181 GSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
            +GGG  SGKN YRTDICR WEDSGSCR+GHKCQFAHGKE+LRP RLPV+ KPK +++Y 
Sbjct: 181 VTGGGSLSGKNLYRTDICRSWEDSGSCRYGHKCQFAHGKEELRPARLPVKNKPKVSDSYC 240

Query: 241 ----GLKSRNSHSLTGIAATKTQSNSVDTITKTEISK-RGVTTMPSSNSVRHMNIKPSLI 300
                 K  +SH+L   A T + S  +DTI  +E+S+  G  TM    S+RHMN KPSLI
Sbjct: 241 TTYGHSKFCDSHAL---AVTTSHSYVIDTINNSEVSRSEGGKTM----SIRHMNTKPSLI 300

Query: 301 STISIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTKKRLPVFTQLCSGK 314
           STISI+DWSPEDDGIKIV+P ++STKREDVNQ+IH VLYGST E TKKRLPVFTQLCS K
Sbjct: 301 STISIVDWSPEDDGIKIVLPNSKSTKREDVNQYIHEVLYGSTNERTKKRLPVFTQLCSEK 357

BLAST of Clc09G22920 vs. ExPASy TrEMBL
Match: A0A6J1IEX1 (uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472616 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.3e-107
Identity = 224/360 (62.22%), Postives = 255/360 (70.83%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRY---- 60
           MEDRQGKRSSK  IIKGLN +VRPI IQMDNHLVIGGT HYHQETN K PTI+DRY    
Sbjct: 1   MEDRQGKRSSKASIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  -----------------------------------------TIMNHYASSTSGSNSFSSR 120
                                                    +I+NH+ASSTSGS+SF SR
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTFSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120

Query: 121 GAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
             GS LSPLSA+ENLET  VRSPQIYGTP+KV EEVIVMD ILI+S+ GGAKT++S LDS
Sbjct: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
           GSGGG S  KNQYRTDICR WEDSGSCRFGHKCQFAHGKE+LRP  LPV+TKPKF E Y 
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL 240

Query: 241 --GLKSRNSHSLTGIAATKTQSNSVDTITKTEISKRGVTTMPSSNSVRHMNIKPSLISTI 300
             GLKSRN+HSLTGIAAT TQSNS+    KTE+++RG     S NS+ ++N         
Sbjct: 241 THGLKSRNNHSLTGIAAT-TQSNSLYATFKTELNRRG----HSINSIHNLN--------- 300

Query: 301 SIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTKKRLPVFTQLCSGKLQQ 313
              DWSP+DDGI++VVP+T+ST R DV+QHI  VLYGSTTE  KKRLPVF QLCS +L++
Sbjct: 301 --TDWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRLEE 343

BLAST of Clc09G22920 vs. ExPASy TrEMBL
Match: A0A6J1ICU5 (uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472626 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.8e-107
Identity = 224/360 (62.22%), Postives = 255/360 (70.83%), Query Frame = 0

Query: 1   MEDRQGKRSSKTPIIKGLNASVRPINIQMDNHLVIGGTRHYHQETNCKSPTIIDRY---- 60
           MEDRQGKRSSK  IIKGLN +VRPI IQMDNHLVIGGT HYHQETN K PTI+DRY    
Sbjct: 1   MEDRQGKRSSKPSIIKGLNPTVRPIKIQMDNHLVIGGTGHYHQETNSKIPTILDRYAEKH 60

Query: 61  -----------------------------------------TIMNHYASSTSGSNSFSSR 120
                                                    +I+NH+ASSTSGS+SF SR
Sbjct: 61  DRSTPIVSYFRSRSPVVGKLPSAGDTCSTPVADVINASYRSSIINHFASSTSGSSSFGSR 120

Query: 121 GAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGILINSIPGGAKTVRSPLDS 180
             GS LSPLSA+ENLET  VRSPQIYGTP+KV EEVIVMD ILI+S+ GGAKT++S LDS
Sbjct: 121 RGGSSLSPLSALENLETTPVRSPQIYGTPLKVHEEVIVMDEILISSVHGGAKTLKSALDS 180

Query: 181 GSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKFNEAY- 240
           GSGGG S  KNQYRTDICR WEDSGSCRFGHKCQFAHGKE+LRP  LPV+TKPKF E Y 
Sbjct: 181 GSGGGSSLSKNQYRTDICRSWEDSGSCRFGHKCQFAHGKEELRPVHLPVKTKPKFGEPYL 240

Query: 241 --GLKSRNSHSLTGIAATKTQSNSVDTITKTEISKRGVTTMPSSNSVRHMNIKPSLISTI 300
             GLKSRN+HSLTGIAAT TQSNS+    KTE+++RG     S NS+ ++N         
Sbjct: 241 THGLKSRNNHSLTGIAAT-TQSNSLYATFKTELNRRG----HSINSIHNLN--------- 300

Query: 301 SIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEMTKKRLPVFTQLCSGKLQQ 313
              DWSP+DDGI++VVP+T+ST R DV+QHI  VLYGSTTE  KKRLPVF QLCS +L++
Sbjct: 301 --TDWSPDDDGIEVVVPETKST-RGDVDQHILEVLYGSTTERAKKRLPVFVQLCSSRLEE 343

BLAST of Clc09G22920 vs. ExPASy TrEMBL
Match: A0A0A0K529 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.9e-106
Identity = 208/259 (80.31%), Postives = 228/259 (88.03%), Query Frame = 0

Query: 59  MNHYASSTSGSNSFSSRGAGSPLSPLSAIENLETPRVRSPQIYGTPVKVDEEVIVMDGIL 118
           MNHYASSTSGSNSF SRGAG  LSPLSAIENLETP +RSPQIYGTP+KVDEEVIVMDGIL
Sbjct: 1   MNHYASSTSGSNSFGSRGAGLSLSPLSAIENLETPPIRSPQIYGTPMKVDEEVIVMDGIL 60

Query: 119 INSIPGGAKTVRSPLDSGSGGGLSSGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLR 178
           I+SI G AKTVRSPLDSGSGGG   GKNQYR+DICRYWEDSG+CRFG+KCQFAHGKEDLR
Sbjct: 61  ISSIHGEAKTVRSPLDSGSGGG---GKNQYRSDICRYWEDSGTCRFGNKCQFAHGKEDLR 120

Query: 179 PGRLPVRTKPKFNEAYGLKSRNSHSLTGIAATKT---QSNSVDTITKTEISKRGVTTMPS 238
           PGRLPVRTK KF+E YG K RN+HSLTGIAAT T    SN VDTITKTE+SKRG+T  P+
Sbjct: 121 PGRLPVRTKTKFSETYGSKFRNNHSLTGIAATTTTQSNSNLVDTITKTELSKRGLT--PT 180

Query: 239 SNSVR-HMNIKPSLISTISIIDWSPEDDGIKIVVPKTESTKREDVNQHIHGVLYGSTTEM 298
           S++++ H N  P+LISTISII+WSPEDDGIKI VP TESTKREDVNQHIH VLYGSTTE 
Sbjct: 181 SSTLKGHTNNNPTLISTISIINWSPEDDGIKIAVPGTESTKREDVNQHIHEVLYGSTTER 240

Query: 299 TKKRLPVFTQLCSGKLQQE 314
           TKKRLPVF Q+CS +LQ+E
Sbjct: 241 TKKRLPVFVQICSEELQEE 254

BLAST of Clc09G22920 vs. TAIR 10
Match: AT1G32360.1 (Zinc finger (CCCH-type) family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05
Identity = 24/61 (39.34%), Postives = 32/61 (52.46%), Query Frame = 0

Query: 124 GGAKTVRSPLDSGSGGGLSSGK-------NQYRTDICRYWEDSGSCRFGHKCQFAHGKED 178
           GG  +  + +  G GGG  SG        + ++T IC  WE +G C FG KC FAHG  +
Sbjct: 230 GGGGSSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAE 289

BLAST of Clc09G22920 vs. TAIR 10
Match: AT1G66810.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-05
Identity = 15/31 (48.39%), Postives = 25/31 (80.65%), Query Frame = 0

Query: 149 RTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 180
           +T++C  W+++G+C +G  CQFAHG ++LRP
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGIDELRP 264

BLAST of Clc09G22920 vs. TAIR 10
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-05
Identity = 23/65 (35.38%), Postives = 36/65 (55.38%), Query Frame = 0

Query: 149 RTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKF--------NEAYGLKSRN 206
           +T++C  W+++G+C +G  CQFAHG ++LRP     R K +         N  YG +   
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF 283

BLAST of Clc09G22920 vs. TAIR 10
Match: AT1G68200.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.3e-05
Identity = 23/65 (35.38%), Postives = 36/65 (55.38%), Query Frame = 0

Query: 149 RTDICRYWEDSGSCRFGHKCQFAHGKEDLRPGRLPVRTKPKF--------NEAYGLKSRN 206
           +T++C  W+++G+C +G  CQFAHG ++LRP     R K +         N  YG +   
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHF 282

BLAST of Clc09G22920 vs. TAIR 10
Match: AT1G01350.1 (Zinc finger (CCCH-type/C3HC4-type RING finger) family protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.8e-04
Identity = 24/81 (29.63%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 127 KTVRSPLDSGSGGGLS-------SGKNQYRTDICRYWEDSGSCRFGHKCQFAHGKEDLRP 186
           +T+ S    GS G L        S +  Y+ DIC+ ++++G C +G  C+F H + D +P
Sbjct: 173 QTISSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKP 232

Query: 187 GRLPVRTKPKFNEAYGLKSRN 201
           G    + + ++ EA  ++ RN
Sbjct: 233 G---WQIEKEWEEAEKVRKRN 250

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897010.18.3e-15288.22uncharacterized protein LOC120085195 [Benincasa hispida] >XP_038897011.1 unchara... [more]
XP_004148935.11.0e-13882.02uncharacterized protein LOC101215865 [Cucumis sativus] >XP_011658933.1 uncharact... [more]
TYK07952.13.2e-13579.20tristetraprolin-like isoform X2 [Cucumis melo var. makuwa][more]
XP_022154583.14.3e-11664.56uncharacterized protein LOC111021811 [Momordica charantia] >XP_022154584.1 uncha... [more]
XP_023536031.11.9e-10863.06uncharacterized protein LOC111797287 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
Match NameE-valueIdentityDescription
P479749.9e-0751.22mRNA decay activator protein ZFP36L2 OS=Homo sapiens OX=9606 GN=ZFP36L2 PE=1 SV=... [more]
Q5ISE22.2e-0650.00mRNA decay activator protein ZFP36L3 OS=Mus musculus OX=10090 GN=Zfp36l3 PE=1 SV... [more]
P479792.2e-0649.09Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ... [more]
P479804.9e-0640.68Protein TIS11 OS=Drosophila melanogaster OX=7227 GN=Tis11 PE=2 SV=2[more]
P239494.9e-0648.78mRNA decay activator protein ZFP36L2 OS=Mus musculus OX=10090 GN=Zfp36l2 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A5D3C9H31.5e-13579.20Tristetraprolin-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A6J1DKP72.1e-11664.56uncharacterized protein LOC111021811 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1IEX11.3e-10762.22uncharacterized protein LOC111472616 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1ICU51.8e-10762.22uncharacterized protein LOC111472626 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A0A0K5291.9e-10680.31C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G103290 P... [more]
Match NameE-valueIdentityDescription
AT1G32360.12.5e-0539.34Zinc finger (CCCH-type) family protein [more]
AT1G66810.12.5e-0548.39Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
AT1G68200.13.3e-0535.38Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
AT1G68200.23.3e-0535.38Zinc finger C-x8-C-x5-C-x3-H type family protein [more]
AT1G01350.12.8e-0429.63Zinc finger (CCCH-type/C3HC4-type RING finger) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 147..174
e-value: 1.0E-6
score: 38.3
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 148..174
e-value: 1.3E-7
score: 31.3
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 147..175
score: 16.126343
NoneNo IPR availableGENE3D4.10.1000.10coord: 142..180
e-value: 2.1E-15
score: 57.8
NoneNo IPR availablePANTHERPTHR12547CCCH ZINC FINGER/TIS11-RELATEDcoord: 8..305
NoneNo IPR availablePANTHERPTHR12547:SF142ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEINcoord: 8..305
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 147..178

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G22920.2Clc09G22920.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding