Clc09G14650 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G14650
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionmediator of RNA polymerase II transcription subunit 15a
LocationClcChr09: 19301344 .. 19303164 (+)
RNA-Seq ExpressionClc09G14650
SyntenyClc09G14650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTTGCCATCTCTATCCCAAGTTGGCACCAGCGGTTTATTGGTCCTTTTCAAATCATTGAATGTGTGGGCCCTGTTGCATGTCGTTTGGAGTTACCCACCACCTTGAAGGTACATCCAGTTTTTCATGTAGCCCAGTTGCGTAAGGCTGTTGGTTCGGTGTTTTCCTTATTGGCATCCCTTCCAAATTTGCATCCCAACTTGTCTCTTAATTTGAAGCCCATGGGTGTTTTGGGCTTGCGCAATGTCACCTGTAGCAGCCCTGATGCGGAAGAATTTGAAGTCTGAATTCATTGGGAGCGCATGCTGCCACTGATGCTACTTGGGAGAATGGACACGTTTTGGTGCACCAATTTCCCGACTTCCACCTCAAGGACAAGGTGGCTCTTCAGGCAGCGGGTAGTGATGGACCCCGGTTTACTAAAGTGTATATGCGTAGAAATAGAAAAAAGATAAAAGAGGGGCAAAATGGGCAAAATGATGTAATTGATGGAGAATGAAGTTGGTTAGGCAGGTGAGTACCTCTGATTGTGCGGGGCCTTTGGGATTTTGTTATTTAGAGGTTTTTCCCTTTATAGGCAGCAAGGAAGGGTTATTTTCTTTTTATCTTTTTGCAAACATCGTTTTGTAGCTCTTTGAGCATTGCGGAGAAGGGGGAGATCTTGAACTCCCTTGGCTATTTTTGCCAAAACAGTGAATATATAATTTCATGAACTATCAGAATTCAAGGAGAAGAAGAATCGAAGAACTTGAATCTCGTACCAGCTCTAATCATCTTTCATTGTCTCCCTTTCTTTTCTTACCTTTCGTACATTTTCAAGCCCCACTAAAGAAGTCCAAATTCAAGTGGATTCTACACAGCTCCTCACGTGTTTGGTGTATGTATTAATTGTCACCTGGTAGCCAAACTGTCAGATGGAAGGATTAGTTGTTTCTGATATTATTTTTTTCACTTTTGAAATGGTTATTTTATCTGACCACTATTTCTTACTACATTTCTTTTAAAAACTTTGGTTGAAATTAGTTAGTTTTATTGATATTTTTAGGTAGAGTATTAATTATTTTACATCAAAGTTTTTACTAATGCTATTTATTTATTATTTTATTGGGTGTGTCTCCCTTCATTCAGGTGACACCTCTTTATCACCTCTAGCCTTGAGGCAATGAGGTGACTCGTTACTTGAAAGAGCGCCTTGTACTTTGAAGACACTAGTTAGCACCTAACATATGTGTAAAGATGGAAAGAGGAAGAGATAGTTGAAACTGTTCCGCTTCCTGTTAATAGAAACTGTTAGGAGAGGTAGAATGCTGATTTTCTCTAGATTCTGTCGTCGGTAAGAATTCTCCCAAATTTGCAATGGGACCAAAAATTGGCAAAACCGACTTCTCTTGCTCCCTTTTCTGATTTTTTGTTATTTTACATCCACGATAGATTGGGTGATTTAATCATCTTCTGCCTGTTCCTTCTCTTTGGTGAATGCCTTGCTTTTCACTTTATTACTCGAGCCTATGATTCTTGCTTAAAATCCTGTAATTTTCTGTTTAATTTCATTTCAGTTTTGTTGGTCCCTATTAGTGTATTATCGTTATCAACATCATTTTTTTTGCAGTAAGGAATATGAAGACCTTTCAGTAAAGGCCAAGTCAAGATTTAGCATATCCTTGCGAAACCTTTCACAACCGATGTCGCTCGGGGACATGGCAAGAACTTGGGATGTCTGTGCACGTGCTGTTGTTTCTGAGTACGCTCAGCAGAGCGGTGGTGGCAGCTTTTGTTCAAAGTATGGTGCTTGGGAGAACTGTTTGAGCGCTGCGTGA

mRNA sequence

ATGTCTTTTGCCATCTCTATCCCAAGTTGGCACCAGCGGTTTATTGGTCCTTTTCAAATCATTGAATGTGTGGGCCCTGTTGCATGTCGTTTGGAGTTACCCACCACCTTGAAGGTACATCCAGTTTTTCATGTAGCCCAGTTGCGTAAGGCTGTTGGTTCGGTGTTTTCCTTATTGGCATCCCTTCCAAATTTGCATCCCAACTTGTCTCTTAATTTGAAGCCCATGGGTGTTTTGGGCTTGCGCAATGTCACCTGTAGCAGCCCTGATGCGGAAGAATTTGAAGACAAGGTGGCTCTTCAGGCAGCGGGTAGTGATGGACCCCGGTTTACTAAAGTTAAGGAATATGAAGACCTTTCAGTAAAGGCCAAGTCAAGATTTAGCATATCCTTGCGAAACCTTTCACAACCGATGTCGCTCGGGGACATGGCAAGAACTTGGGATGTCTGTGCACGTGCTGTTGTTTCTGAGTACGCTCAGCAGAGCGGTGGTGGCAGCTTTTGTTCAAAGTATGGTGCTTGGGAGAACTGTTTGAGCGCTGCGTGA

Coding sequence (CDS)

ATGTCTTTTGCCATCTCTATCCCAAGTTGGCACCAGCGGTTTATTGGTCCTTTTCAAATCATTGAATGTGTGGGCCCTGTTGCATGTCGTTTGGAGTTACCCACCACCTTGAAGGTACATCCAGTTTTTCATGTAGCCCAGTTGCGTAAGGCTGTTGGTTCGGTGTTTTCCTTATTGGCATCCCTTCCAAATTTGCATCCCAACTTGTCTCTTAATTTGAAGCCCATGGGTGTTTTGGGCTTGCGCAATGTCACCTGTAGCAGCCCTGATGCGGAAGAATTTGAAGACAAGGTGGCTCTTCAGGCAGCGGGTAGTGATGGACCCCGGTTTACTAAAGTTAAGGAATATGAAGACCTTTCAGTAAAGGCCAAGTCAAGATTTAGCATATCCTTGCGAAACCTTTCACAACCGATGTCGCTCGGGGACATGGCAAGAACTTGGGATGTCTGTGCACGTGCTGTTGTTTCTGAGTACGCTCAGCAGAGCGGTGGTGGCAGCTTTTGTTCAAAGTATGGTGCTTGGGAGAACTGTTTGAGCGCTGCGTGA

Protein sequence

MSFAISIPSWHQRFIGPFQIIECVGPVACRLELPTTLKVHPVFHVAQLRKAVGSVFSLLASLPNLHPNLSLNLKPMGVLGLRNVTCSSPDAEEFEDKVALQAAGSDGPRFTKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGAWENCLSAA
Homology
[Close]
BLAST of Clc09G14650 vs. NCBI nr
Match: XP_022988663.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1301 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1360

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1361 WENCLSAA 1368

[Close]
BLAST of Clc09G14650 vs. NCBI nr
Match: XP_022927757.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1297 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1356

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1357 WENCLSAA 1364

[Close]
BLAST of Clc09G14650 vs. NCBI nr
Match: XP_022988665.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1269 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1328

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1329 WENCLSAA 1336

[Close]
BLAST of Clc09G14650 vs. NCBI nr
Match: KAG6588792.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1268 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1327

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1328 WENCLSAA 1335

[Close]
BLAST of Clc09G14650 vs. NCBI nr
Match: XP_038887416.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Benincasa hispida] >XP_038887806.1 mediator of RNA polymerase II transcription subunit 15a-like [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 6.7e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114 KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
           KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 704 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 763

Query: 174 WENCLSAA 182
           WENCLSAA
Sbjct: 764 WENCLSAA 771

[Close]
BLAST of Clc09G14650 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-19
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 0 

Query: 56   FSLLASLPNLHPNL-SLNLKPMGVLGLRNVTCSSPD-AEEFEDKVALQAAGSDGPRFTKV 115
            F  ++  P L  +L S  + P+  L L  V CS P+ +    DK+ ++ +          
Sbjct: 1219 FIAVSLSPALKAHLSSTQMSPIQPLRLL-VPCSYPNGSPSLLDKLPVETS---------- 1278

Query: 116  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 175
            KE EDLS KA +RF+I LR+LSQPMSL D+A+TWD CARAV+ EYAQQ GGG+F SKYG 
Sbjct: 1279 KENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGT 1335

Query: 176  WENCLSAA 182
            WE  ++A+
Sbjct: 1339 WEKYVAAS 1335

[Close]
BLAST of Clc09G14650 vs. ExPASy Swiss-Prot
Match: Q9SHV7 (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana OX=3702 GN=MED15C PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.7e-15
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 111 TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSK 170
           T V +YEDLS + +SRFS+S++  S+P     +A+TW+ CARA + EYA++ GGG+F SK
Sbjct: 865 TSVHKYEDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSK 924

Query: 171 YGAWENCLSAA 182
           YGAWE  L A+
Sbjct: 925 YGAWETVLRAS 935

[Close]
BLAST of Clc09G14650 vs. ExPASy TrEMBL
Match: A0A6J1JMY4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1301 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1360

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1361 WENCLSAA 1368

[Close]
BLAST of Clc09G14650 vs. ExPASy TrEMBL
Match: A0A6J1JM75 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1300 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1359

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1360 WENCLSAA 1367

[Close]
BLAST of Clc09G14650 vs. ExPASy TrEMBL
Match: A0A6J1JK72 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1269 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1328

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1329 WENCLSAA 1336

[Close]
BLAST of Clc09G14650 vs. ExPASy TrEMBL
Match: A0A6J1JHV7 (mediator of RNA polymerase II transcription subunit 15a-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1196 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1255

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1256 WENCLSAA 1263

[Close]
BLAST of Clc09G14650 vs. ExPASy TrEMBL
Match: A0A6J1EI34 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434564 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.2e-29
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 114  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 173
            KEYEDLS+KAKSRFSISLRNLSQPMSLGD+ARTWDVCARAVVSEYAQQSGGGSFCSKYGA
Sbjct: 1297 KEYEDLSIKAKSRFSISLRNLSQPMSLGDIARTWDVCARAVVSEYAQQSGGGSFCSKYGA 1356

Query: 174  WENCLSAA 182
            WENCLSAA
Sbjct: 1357 WENCLSAA 1364

[Close]
BLAST of Clc09G14650 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 7.1e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 0 

Query: 56   FSLLASLPNLHPNL-SLNLKPMGVLGLRNVTCSSPD-AEEFEDKVALQAAGSDGPRFTKV 115
            F  ++  P L  +L S  + P+  L L  V CS P+ +    DK+ ++ +          
Sbjct: 1219 FIAVSLSPALKAHLSSTQMSPIQPLRLL-VPCSYPNGSPSLLDKLPVETS---------- 1278

Query: 116  KEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSKYGA 175
            KE EDLS KA +RF+I LR+LSQPMSL D+A+TWD CARAV+ EYAQQ GGG+F SKYG 
Sbjct: 1279 KENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGT 1335

Query: 176  WENCLSAA 182
            WE  ++A+
Sbjct: 1339 WEKYVAAS 1335

[Close]
BLAST of Clc09G14650 vs. TAIR 10
Match: AT2G10440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 8319 Blast hits to 5104 proteins in 317 species: Archae - 0; Bacteria - 285; Metazoa - 1706; Fungi - 535; Plants - 320; Viruses - 18; Other Eukaryotes - 5455 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 6.9e-16
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 111 TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSK 170
           T V +YEDLS + +SRFS+S++  S+P     +A+TW+ CARA + EYA++ GGG+F SK
Sbjct: 865 TSVHKYEDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSK 924

Query: 171 YGAWENCLSAA 182
           YGAWE  L A+
Sbjct: 925 YGAWETVLRAS 935

[Close]
BLAST of Clc09G14650 vs. TAIR 10
Match: AT2G10440.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 1628 Blast hits to 1350 proteins in 149 species: Archae - 0; Bacteria - 39; Metazoa - 480; Fungi - 159; Plants - 187; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 6.9e-16
Identity = 37/71 (52.11%), Postives = 52/71 (73.24%), Query Frame = 0 

Query: 111 TKVKEYEDLSVKAKSRFSISLRNLSQPMSLGDMARTWDVCARAVVSEYAQQSGGGSFCSK 170
           T V +YEDLS + +SRFS+S++  S+P     +A+TW+ CARA + EYA++ GGG+F SK
Sbjct: 775 TSVHKYEDLSARTRSRFSLSMKEFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSK 834

Query: 171 YGAWENCLSAA 182
           YGAWE  L A+
Sbjct: 835 YGAWETVLRAS 845

The following BLAST results are available for this feature:
BLAST of Clc09G14650 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022988663.16.7e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_022927757.16.7e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_022988665.16.7e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbi... [more]
KAG6588792.16.7e-2997.06Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy... [more]
XP_038887416.16.7e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Beninca... [more]
BLAST of Clc09G14650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I1711.0e-1946.88Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
Q9SHV79.7e-1552.11Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ... [more]
BLAST of Clc09G14650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JMY43.2e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1JM753.2e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur... [more]
A0A6J1JK723.2e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucur... [more]
A0A6J1JHV73.2e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X4 OS=Cucur... [more]
A0A6J1EI343.2e-2997.06mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
BLAST of Clc09G14650 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15780.17.1e-2146.88unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G10440.16.9e-1652.11unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G10440.26.9e-1652.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044661Mediator of RNA polymerase II transcription subunit 15a/b/c-likePANTHERPTHR33137MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATEDcoord: 113..180
NoneNo IPR availablePANTHERPTHR33137:SF27OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATEDcoord: 113..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G14650.1Clc09G14650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0003713 transcription coactivator activity