
Clc09G06270 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAGTCGGAATCGATGATAGTGCGCACAGTCTCTACGCTCTCGAGTGGACCTTAGACCCATCTCATCGTTCCAATCTCCTCCGGTTAACCTCTCCGTTCAAGTCATCGTGGTTCACGCCAAACCCTTCCCCTTCCTCCGCCGTCAGTCTCGCCGGACCCCTGGTAATTGATTTTCATTTTCTTCTTGATTTCTGGTTGATTGATCATTAATTTATTGAGGATCCGTAAATAAACGGTGGTAACGAGTGTCGATTGCAGGAGCGGCTGAGGTTCCTGCCCTATGTGGATTCGGATTTGAAGAAGATTGCTGCGCGAGTAATCGAAAAGGCGAAGGAGATTTGCCTCGCTAGATCGGTAATCCACTCGATCCTTTTCAATTAATAACCTGATTTACTGTTGAGCGTTCTAAGTTTTGCTTATTTAACCCCGATTCAGTTATTTAATTGCGCTGTTGCTGGTAACATATGTGGATTTAGGATCGCTTTCTTTTCCAGAATAATGTGAGCAGATTGAAATGAAAATTAGTTGGAAAGAAAATTTGTGCACTGACCAAAAACCTACAAAATTTGTTTAATAAAATGATTTTCAAATTGAAATAGGAATAGGAAGTATTAACAATCTAAGATTATCATTATATTGTTCATTCATGCTATAATTGTAGGACTGAAAAGGTAGAAAGAAAAGGAGTTCATGTAATAAGAATAAACAAAAGTAAAAAAGTGATTGTTACCTAATAAAATTGATTAAGAATGAAATTCCTTATCATGATTTAACATATCATGGTCTAGAAAACATCCCAGGATAGCCATACAACCATATAGTATTTTACTGTTGATATGATTTTTTTAGAAAAAATTTAAATTCTAAGTGGATTTGCATGTTTGCATCATGCTATCATAGTAGGACTGTAAAAGGTGGAAGGAAAAGGAATTAATGTAATAAAGAATAAATAAAAGTAAAAAGTGATTGTTGCCTAATAAAATTTATCATGATCTTGAAACATCCAGGACAACTATACAAACTACGATTGGTATTTATTGTTGACATGATTCTTCTTTTTTATTATTAAAATTCTAATGGATTTACATATTTAATACAGCAATGGAAAGGGGATATATTAAAACTAAGGCCAAACTGGGTGTAGCTAGTTTGGCTCTTCAATTTATGTGTCCGACTTCCAGTGGTACATACGATGGAACTACACTTTTGTAATAATACATTTAACTTAAAAAGTGGAAATGTTTTTCACTATAATTTGTAATGATACCCCTAGCTAAAAAAGTTGGAATATTTTTTCTTCATAGAATTCGTGTACCATTAAAATGGGAAAGATGCACTGGATTCTGATTGGAGTTTAAACTCTTAGGCAGCTTCGGAGAAAGGGTAGAGAGAACTTTATCCCATCTACTATTGAAGATTTTTGTTCTGAAATTCTGTAATATATGTGACAATATCCAGGTGCATGATGTTGTGTTGGAGGTGATAGAAGGAGGATGCCAGGAATGTACTTTGTGAGGCTGTAGAAAAGCACCATGCTTCTATGCTGGTTGTTGGAAGCCACGGATATGGAGCTATAAAGAGGTACTTCTCTATAAATCAATACTTATTTTAAGAGTTTATAAATCAGAAATATGGATATAATAGGCTAAAGGCTTGGAAAGGCGTGACAGAACCCCAATTGATGATCTGATCTCAGATGTTAGAATCTGGTAAGAATTTCAGGTCCTATTTGTTTAGAAAACGTTCTTACAACTTGAAAAGCTGATAAGGAAACAAATAAAGCGGGGAGTTTTTTTCTTTTATAGCAAAATCTATGAGGACCGTTGATAGACTCTATTTTTATTCACTTTTATTAGTGATAAACTCTCTTTTTCATTTATTTGGTCAAAATGTCTGGTCAATTATTGAGAATAATGAAATTATTTATTAAGTTGAATCTGATTTTCTTTTTTTTTGATGGCAGGGCTGTTTTGGGCAGCGTAAGTGATTATTGTGCTCATCATGCCCATTGCACCGTGATGATAGTAAAGAAGCCTAAAACCAAGCACTAGATCTCATTGCATTTACTCCTTTCCTC ATGGTAGTCGGAATCGATGATAGTGCGCACAGTCTCTACGCTCTCGAGTGGACCTTAGACCCATCTCATCGTTCCAATCTCCTCCGGTTAACCTCTCCGTTCAAGTCATCGTGGTTCACGCCAAACCCTTCCCCTTCCTCCGCCGTCAGTCTCGCCGGACCCCTGGAGCGGCTGAGGTTCCTGCCCTATGTGGATTCGGATTTGAAGAAGATTGCTGCGCGAGTAATCGAAAAGGCGAAGGAGATTTGCCTCGCTAGATCGGTGCATGATGTTGTGTTGGAGGTGATAGAAGGAGGATGCCAGGAATGTACTTTGTGAGGCTGTAGAAAAGCACCATGCTTCTATGCTGGTTGTTGGAAGCCACGGATATGGAGCTATAAAGAGGGCTGTTTTGGGCAGCGTAAGTGATTATTGTGCTCATCATGCCCATTGCACCGTGATGATAGTAAAGAAGCCTAAAACCAAGCACTAGATCTCATTGCATTTACTCCTTTCCTC ATGGTAGTCGGAATCGATGATAGTGCGCACAGTCTCTACGCTCTCGAGTGGACCTTAGACCCATCTCATCGTTCCAATCTCCTCCGGTTAACCTCTCCGTTCAAGTCATCGTGGTTCACGCCAAACCCTTCCCCTTCCTCCGCCGTCAGTCTCGCCGGACCCCTGGAGCGGCTGAGGTTCCTGCCCTATGTGGATTCGGATTTGAAGAAGATTGCTGCGCGAGTAATCGAAAAGGCGAAGGAGATTTGCCTCGCTAGATCGGTGCATGATGTTGTGTTGGAGGTGATAGAAGGAGGATGCCAGGAATGTACTTTGTGA MVVGIDDSAHSLYALEWTLDPSHRSNLLRLTSPFKSSWFTPNPSPSSAVSLAGPLERLRFLPYVDSDLKKIAARVIEKAKEICLARSVHDVVLEVIEGGCQECTL Homology
BLAST of Clc09G06270 vs. NCBI nr
Match: KAA0067998.1 (universal stress protein A-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 124.4 bits (311), Expect = 5.8e-25 Identity = 72/98 (73.47%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Clc09G06270 vs. NCBI nr
Match: TYK18129.1 (universal stress protein A-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 124.4 bits (311), Expect = 5.8e-25 Identity = 72/98 (73.47%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Clc09G06270 vs. NCBI nr
Match: XP_008451574.1 (PREDICTED: universal stress protein A-like protein [Cucumis melo]) HSP 1 Score: 124.4 bits (311), Expect = 5.8e-25 Identity = 72/98 (73.47%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Clc09G06270 vs. NCBI nr
Match: XP_004136030.1 (universal stress protein PHOS34 [Cucumis sativus] >KGN44933.1 hypothetical protein Csa_015987 [Cucumis sativus]) HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24 Identity = 73/102 (71.57%), Postives = 76/102 (74.51%), Query Frame = 0
BLAST of Clc09G06270 vs. NCBI nr
Match: XP_038899903.1 (universal stress protein PHOS34-like [Benincasa hispida]) HSP 1 Score: 119.4 bits (298), Expect = 1.9e-23 Identity = 69/98 (70.41%), Postives = 74/98 (75.51%), Query Frame = 0
BLAST of Clc09G06270 vs. ExPASy TrEMBL
Match: A0A5A7VJK7 (Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001870 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25 Identity = 72/98 (73.47%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Clc09G06270 vs. ExPASy TrEMBL
Match: A0A5D3D3W1 (Universal stress protein A-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00590 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25 Identity = 72/98 (73.47%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Clc09G06270 vs. ExPASy TrEMBL
Match: A0A1S3BRU9 (universal stress protein A-like protein OS=Cucumis melo OX=3656 GN=LOC103492814 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 2.8e-25 Identity = 72/98 (73.47%), Postives = 75/98 (76.53%), Query Frame = 0
BLAST of Clc09G06270 vs. ExPASy TrEMBL
Match: A0A0A0K626 (Usp domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G396480 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25 Identity = 73/102 (71.57%), Postives = 76/102 (74.51%), Query Frame = 0
BLAST of Clc09G06270 vs. ExPASy TrEMBL
Match: A0A6J1KSS5 (universal stress protein PHOS34 OS=Cucurbita maxima OX=3661 GN=LOC111497899 PE=4 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23 Identity = 68/102 (66.67%), Postives = 75/102 (73.53%), Query Frame = 0
BLAST of Clc09G06270 vs. TAIR 10
Match: AT2G47710.1 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 89.0 bits (219), Expect = 2.5e-18 Identity = 52/98 (53.06%), Postives = 60/98 (61.22%), Query Frame = 0
BLAST of Clc09G06270 vs. TAIR 10
Match: AT5G49050.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT2G47710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 58.2 bits (139), Expect = 4.8e-09 Identity = 39/98 (39.80%), Postives = 53/98 (54.08%), Query Frame = 0
BLAST of Clc09G06270 vs. TAIR 10
Match: AT3G11930.3 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04 Identity = 35/119 (29.41%), Postives = 56/119 (47.06%), Query Frame = 0
BLAST of Clc09G06270 vs. TAIR 10
Match: AT3G11930.2 (Adenine nucleotide alpha hydrolases-like superfamily protein ) HSP 1 Score: 40.8 bits (94), Expect = 7.9e-04 Identity = 35/119 (29.41%), Postives = 56/119 (47.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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