Clc09G03860 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G03860
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Non-specific lipid-transfer protein
Location	ClcChr09: 3005248 .. 3006436 (-)
RNA-Seq Expression	Clc09G03860
Synteny	Clc09G03860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTCTTAGATCAACCATTCCCAAGCTTGGAGCTATATTGTTTGTGATATTAATTTTGTTTCTTCAAGATTCAAAGGCTGCAATCTCATGCAATGATGTGACAAAGGATTTGATGCCATGTGTGAGTTACCTTGTGAGTGGGAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAACTAGTGCTGACAAGAAGGCTGCATGTCAATGCATCAAGTCAGCTGCTAGTAATGTGAATTACAATGCTAAATTGGCTGAAGATCTTCCTTCCAATTGTGGCATTACCCTACCTTTCTCCATCTCTGCTGGCATTGACTGCTCTAAGTATGAAAATCTTGAGAGTATAATATGAATTTTTTAATCTTTACTCCAAAAAAATTATATTTGGCAAGTAATTCAAATCGTTATTGTTAATACTTGATTTGGTTGGGCGGTCCTTGTTTGCATGGATATGGGTTGTATAGGCCTAATAATATTTCTGATCGTCCATCTCAAGTTGACTTATGTAAGACAGAATCTTACACCAGTGTCGTATTTTGCCCAACATACTTTGATGGTTAAGTCAGTGTTAGCTGAAGTAGTGTCAAGCTGAGTATAAACATAGGTTTTTTGAAATACCTTTCAAGGTGGGGTGTGCTACTACTTATACTGCCCTTCCCTAGTACCTTCTTGGGCATTACATTTAGGAGTTCTATAGTGTCAATGGGAGGTGTTCGAGATAGGTTTGATAGCTTGTTAGTTGGTTTGGAGTTTCTTTGTCCCTTTTATGTAGGTGTAAGGCCTCAATTTGGTTGGTGTGACTTACGAGAGAATTCCCTTCCTCTTTTGAGAACTACGTCGACGTGACGAGCCACTTGAATTTTGACCATGGTCTTTCTTTGTGATTACTCCCATAACATTTATCATTCCTCAATTTAAAAAAGTTAAACTTGAACTATTCTGGAAATTAATTATCATACAATGTTGCTATGTTCAGTGATTTTTTCCTTAATTTTCTTTTGAACAAACTAATGCTAGTTAAACTAATGGTTTTTTTTTTTTGTGTGTGTTTTTAATTTTCAGGATTAATTGATGATTATGAGAAAGCATTTGATCAGAAGGGACCAGAAATGACAGAATTCTACTATAAAGTTGGAGAGGAAGTATTACATATTATATAA

mRNA sequence

ATGGCAACTCTTAGATCAACCATTCCCAAGCTTGGAGCTATATTGTTTGTGATATTAATTTTGTTTCTTCAAGATTCAAAGGCTGCAATCTCATGCAATGATGTGACAAAGGATTTGATGCCATGTGTGAGTTACCTTGTGAGTGGGAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAACTAGTGCTGACAAGAAGGCTGCATGTCAATGCATCAAGTCAGCTGCTAGTAATGTGAATTACAATGCTAAATTGGCTGAAGATCTTCCTTCCAATTGTGGCATTACCCTACCTTTCTCCATCTCTGCTGGCATTGACTGCTCTAAGTATGAAAATCTTGAGAGATTAATTGATGATTATGAGAAAGCATTTGATCAGAAGGGACCAGAAATGACAGAATTCTACTATAAAGTTGGAGAGGAAGTATTACATATTATATAA

Coding sequence (CDS)

ATGGCAACTCTTAGATCAACCATTCCCAAGCTTGGAGCTATATTGTTTGTGATATTAATTTTGTTTCTTCAAGATTCAAAGGCTGCAATCTCATGCAATGATGTGACAAAGGATTTGATGCCATGTGTGAGTTACCTTGTGAGTGGGAGTGGGAAGCCACCAAGTGCTTGTTGTGATGGTGCAAAAGCACTTTCTTCAGCAGCCACAACTAGTGCTGACAAGAAGGCTGCATGTCAATGCATCAAGTCAGCTGCTAGTAATGTGAATTACAATGCTAAATTGGCTGAAGATCTTCCTTCCAATTGTGGCATTACCCTACCTTTCTCCATCTCTGCTGGCATTGACTGCTCTAAGTATGAAAATCTTGAGAGATTAATTGATGATTATGAGAAAGCATTTGATCAGAAGGGACCAGAAATGACAGAATTCTACTATAAAGTTGGAGAGGAAGTATTACATATTATATAA

Protein sequence

MATLRSTIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSKYENLERLIDDYEKAFDQKGPEMTEFYYKVGEEVLHII

Homology

[Close]

BLAST of Clc09G03860 vs. NCBI nr
Match: XP_038900062.1 (non-specific lipid-transfer protein 8 [Benincasa hispida])

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-50
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MATLRST-IPKLGA-ILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACC 60
           MATLRST IPKL A +LFVIL LFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACC
Sbjct: 1   MATLRSTIIPKLEAMLLFVILFLFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACC 60

Query: 61  DGAKALSSAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           DGAKALSSAATTSADKKAACQCIKSAASNVNYNAKLA+DLPSNCGI+LPFSISAGIDCSK
Sbjct: 61  DGAKALSSAATTSADKKAACQCIKSAASNVNYNAKLAQDLPSNCGISLPFSISAGIDCSK 120

[Close]

BLAST of Clc09G03860 vs. NCBI nr
Match: KAA0058675.1 (non-specific lipid-transfer protein 8 [Cucumis melo var. makuwa] >TYK10482.1 non-specific lipid-transfer protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 3.0e-46
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 6   STIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 65
           +TIPKLGAIL  + +L L  SKA ISC+DVTKDLMPCVSYLVSGSGKPPSACCDGAKALS
Sbjct: 2   ATIPKLGAILLFVFLL-LGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 61

Query: 66  SAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSKYENL 123
           SAAT+ ADKKAACQCIKSAASNVNYNAKLA+DLPSNCGITLPFSISAGIDCSKYE L
Sbjct: 62  SAATSGADKKAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSKYEYL 117

[Close]

BLAST of Clc09G03860 vs. NCBI nr
Match: XP_004135897.1 (non-specific lipid-transfer protein 8 [Cucumis sativus] >KGN45185.1 hypothetical protein Csa_015613 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-45
Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MATLRSTIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDG 60
           M TLR+ IPKLGA+L  + +L LQ SKA ISC+DVTKDLMPCVSYL+SGSGKPPSACCDG
Sbjct: 1   MVTLRAAIPKLGAVLLFVFLL-LQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDG 60

Query: 61  AKALSSAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           AKALSSAAT+SADKKAAC+CIKSAASNVNYN KLA+DLPSNCGI+LPFSISAGIDCSK
Sbjct: 61  AKALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSK 117

[Close]

BLAST of Clc09G03860 vs. NCBI nr
Match: XP_008461223.1 (PREDICTED: non-specific lipid-transfer protein 8 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 1.7e-44
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 6   STIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 65
           +TIPKLGAIL  + +L L  SKA ISC+DVTKDLMPCVSYLVSGSGKPPSACCDGAKALS
Sbjct: 2   ATIPKLGAILLFVFLL-LGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 61

Query: 66  SAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           SAAT+ ADKKAACQCIKSAASNVNYNAKLA+DLPSNCGITLPFSISAGIDCSK
Sbjct: 62  SAATSGADKKAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSK 113

[Close]

BLAST of Clc09G03860 vs. NCBI nr
Match: XP_023514955.1 (non-specific lipid-transfer protein 8-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-39
Identity = 91/118 (77.12%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MATLRSTIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDG 60
           MA+L+ TI         +++L LQ+S+AAISCNDVTKDL PCVSYL+SGSGKPPSACCDG
Sbjct: 1   MASLKVTIA-------FMMLLLLQESEAAISCNDVTKDLTPCVSYLMSGSGKPPSACCDG 60

Query: 61  AKALSSAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           AKALS AAT+S DKKAACQCIKS A NV YNAKLAEDLP NCGITLPFSISAGIDCSK
Sbjct: 61  AKALSLAATSSDDKKAACQCIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSK 111

[Close]

BLAST of Clc09G03860 vs. ExPASy Swiss-Prot
Match: Q9ZPW9 (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.8e-25
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 13  AILFVILILFL-QDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTS 72
           AI+ V+ I F+ + S++AISC+ V +DL PCVSYL SGSG PP  CCDG K+L++A TTS
Sbjct: 8   AIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTS 67

Query: 73  ADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCS 118
           ADKKAACQCIKS A++V    +LA+ L SNCG +LP   S  +DC+
Sbjct: 68  ADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCT 113

[Close]

BLAST of Clc09G03860 vs. ExPASy Swiss-Prot
Match: Q43767 (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-20
Identity = 50/105 (47.62%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 14  ILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSAD 73
           ++ ++  + L  + AAISC  V+  L PC+SY      KPP+ACC G K L+ AA ++AD
Sbjct: 11  LVALVAAMLLVAADAAISCGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTAD 70

Query: 74  KKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           K+AAC+CIKSAA  +  NA  A  +PS CG+++P++ISA +DCSK
Sbjct: 71  KQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSK 113

[Close]

BLAST of Clc09G03860 vs. ExPASy Swiss-Prot
Match: Q42842 (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare OX=4513 GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.6e-20
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 14  ILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSAD 73
           ++ ++  + L  + AAISC  V+  L PC+SY      KPP ACC G K L+ AA ++AD
Sbjct: 11  LVAMVAAMLLVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTAD 70

Query: 74  KKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           K+AAC+CIKSAA  +  NA  A  +PS CG+++P++ISA +DCSK
Sbjct: 71  KQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSK 113

[Close]

BLAST of Clc09G03860 vs. ExPASy Swiss-Prot
Match: Q43875 (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare OX=4513 GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-19
Identity = 49/105 (46.67%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 14  ILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSAD 73
           ++ ++  + +  + AAISC  V+  L PC+SY      KPP ACC G K L+ AA ++AD
Sbjct: 11  LVAMVAAMLIVATDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTAD 70

Query: 74  KKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           K+AAC+CIKSAA  +  NA  A  +PS CG+++P++ISA +DCSK
Sbjct: 71  KQAACKCIKSAAGGL--NAGKAAGIPSMCGVSVPYAISASVDCSK 113

[Close]

BLAST of Clc09G03860 vs. ExPASy Swiss-Prot
Match: A2ZAS9 (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-18
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 1   MATLRSTIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDG 60
           MA  R T+  +  +  V   +  + + AA+SC DVT  + PC+SY++     P S+CC G
Sbjct: 1   MAGARRTMALVALVAVVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSG 60

Query: 61  AKALSSAATTSADKKAACQCIKSAASNV-NYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
            + L+  A++SAD++ AC C+K+ AS+  N N   A  +PS CG+++ F IS  +DCSK
Sbjct: 61  VRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSK 119

[Close]

BLAST of Clc09G03860 vs. ExPASy TrEMBL
Match: A0A5A7UYN6 (Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001310 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.5e-46
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 0


Query: 6   STIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 65
           +TIPKLGAIL  + +L L  SKA ISC+DVTKDLMPCVSYLVSGSGKPPSACCDGAKALS
Sbjct: 2   ATIPKLGAILLFVFLL-LGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 61

Query: 66  SAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSKYENL 123
           SAAT+ ADKKAACQCIKSAASNVNYNAKLA+DLPSNCGITLPFSISAGIDCSKYE L
Sbjct: 62  SAATSGADKKAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSKYEYL 117

[Close]

BLAST of Clc09G03860 vs. ExPASy TrEMBL
Match: A0A0A0K657 (Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_7G430200 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 7.3e-46
Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MATLRSTIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDG 60
           M TLR+ IPKLGA+L  + +L LQ SKA ISC+DVTKDLMPCVSYL+SGSGKPPSACCDG
Sbjct: 1   MVTLRAAIPKLGAVLLFVFLL-LQVSKATISCSDVTKDLMPCVSYLMSGSGKPPSACCDG 60

Query: 61  AKALSSAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           AKALSSAAT+SADKKAAC+CIKSAASNVNYN KLA+DLPSNCGI+LPFSISAGIDCSK
Sbjct: 61  AKALSSAATSSADKKAACECIKSAASNVNYNVKLAQDLPSNCGISLPFSISAGIDCSK 117

[Close]

BLAST of Clc09G03860 vs. ExPASy TrEMBL
Match: A0A1S3CEM4 (Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103499873 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 8.0e-45
Identity = 99/113 (87.61%), Postives = 105/113 (92.92%), Query Frame = 0


Query: 6   STIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 65
           +TIPKLGAIL  + +L L  SKA ISC+DVTKDLMPCVSYLVSGSGKPPSACCDGAKALS
Sbjct: 2   ATIPKLGAILLFVFLL-LGVSKATISCSDVTKDLMPCVSYLVSGSGKPPSACCDGAKALS 61

Query: 66  SAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           SAAT+ ADKKAACQCIKSAASNVNYNAKLA+DLPSNCGITLPFSISAGIDCSK
Sbjct: 62  SAATSGADKKAACQCIKSAASNVNYNAKLAQDLPSNCGITLPFSISAGIDCSK 113

[Close]

BLAST of Clc09G03860 vs. ExPASy TrEMBL
Match: A0A6J1KW15 (Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111497697 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.7e-39
Identity = 85/101 (84.16%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 18  ILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSADKKAA 77
           +++L LQ+S+AAISCNDVTK+LMPCVSYL+SGSGKPPSACCDGAKALS AAT+S DKKAA
Sbjct: 11  MMLLLLQESEAAISCNDVTKNLMPCVSYLMSGSGKPPSACCDGAKALSLAATSSDDKKAA 70

Query: 78  CQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           C+CIKS A NV YNAKLAEDLP NCGITLPFSISAGIDCSK
Sbjct: 71  CECIKSVAGNVKYNAKLAEDLPGNCGITLPFSISAGIDCSK 111

[Close]

BLAST of Clc09G03860 vs. ExPASy TrEMBL
Match: A0A6J1H5K9 (Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC111460693 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.7e-39
Identity = 90/118 (76.27%), Postives = 101/118 (85.59%), Query Frame = 0


Query: 1   MATLRSTIPKLGAILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDG 60
           MA+L+ TI         +++L LQ+S+AAISCNDVTKDLMPCVSYL+SGSGKPPSACCDG
Sbjct: 1   MASLKVTI-------VCMMLLLLQESEAAISCNDVTKDLMPCVSYLMSGSGKPPSACCDG 60

Query: 61  AKALSSAATTSADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCSK 119
           AKALS AAT+S DKKAAC+CIKS A +V YNAKLAEDLP NCGITLPFSISAGIDCSK
Sbjct: 61  AKALSLAATSSDDKKAACECIKSVAGSVKYNAKLAEDLPGNCGITLPFSISAGIDCSK 111

[Close]

BLAST of Clc09G03860 vs. TAIR 10
Match: AT2G18370.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-26
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 13  AILFVILILFL-QDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTS 72
           AI+ V+ I F+ + S++AISC+ V +DL PCVSYL SGSG PP  CCDG K+L++A TTS
Sbjct: 8   AIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTS 67

Query: 73  ADKKAACQCIKSAASNVNYNAKLAEDLPSNCGITLPFSISAGIDCS 118
           ADKKAACQCIKS A++V    +LA+ L SNCG +LP   S  +DC+
Sbjct: 68  ADKKAACQCIKSVANSVTVKPELAQALASNCGASLPVDASPTVDCT 113

[Close]

BLAST of Clc09G03860 vs. TAIR 10
Match: AT3G08770.1 (lipid transfer protein 6 )

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-17
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 14  ILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSAD 73
           +L V L+L L   +AA+SCN V  DL PC+SY+  G G  P+ CC+G   L S A TS D
Sbjct: 5   LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVD 64

Query: 74  KKAACQCIKSAASNVNYNAKL---AEDLPSNCGITLPFSISAGIDCSKYE 121
           ++  C+CIKSA   +  + +    A +LPS CG+ LP+  S   DC   +
Sbjct: 65  RQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113

[Close]

BLAST of Clc09G03860 vs. TAIR 10
Match: AT3G08770.2 (lipid transfer protein 6 )

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-17
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 14  ILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSAD 73
           +L V L+L L   +AA+SCN V  DL PC+SY+  G G  P+ CC+G   L S A TS D
Sbjct: 5   LLAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQG-GPVPTLCCNGLTTLKSQAQTSVD 64

Query: 74  KKAACQCIKSAASNVNYNAKL---AEDLPSNCGITLPFSISAGIDC 117
           ++  C+CIKSA   +  + +    A +LPS CG+ LP+  S   DC
Sbjct: 65  RQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDC 109

[Close]

BLAST of Clc09G03860 vs. TAIR 10
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-16
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 14  ILFVILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSAD 73
           +  ++  +F   S+AAISCN V  +L PCV Y+V G G  P +CC+G + LS  AT+++D
Sbjct: 8   LCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQG-GAIPYSCCNGIRMLSKQATSASD 67

Query: 74  KKAACQCIKSAASNVNYNA---KLAEDLPSNCGITLPFSISAGIDCS 118
           K+  C+CIKS    V+Y++   K A  LP  CG+ LP+ I    +C+
Sbjct: 68  KQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCN 113

[Close]

BLAST of Clc09G03860 vs. TAIR 10
Match: AT5G59320.1 (lipid transfer protein 3 )

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-15
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 17  VILILFLQDSKAAISCNDVTKDLMPCVSYLVSGSGKPPSACCDGAKALSSAATTSADKKA 76
           V+ +  +    AAISC  V   L PC +YL  G   PPS CC G K L+S A T+ D++ 
Sbjct: 12  VLTVCIVASVDAAISCGTVAGSLAPCATYLSKGGLVPPS-CCAGVKTLNSMAKTTPDRQQ 71

Query: 77  ACQCIKSAASNVN-YNAKLAEDLPSNCGITLPFSISAGIDCS 118
           AC+CI+S A +++  N  LA  LP  CG+++P+ IS   +C+
Sbjct: 72  ACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCN 112

The following BLAST results are available for this feature:

BLAST of Clc09G03860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900062.1	1.5e-50	94.17	non-specific lipid-transfer protein 8 [Benincasa hispida]	[more]
KAA0058675.1	3.0e-46	87.18	non-specific lipid-transfer protein 8 [Cucumis melo var. makuwa] >TYK10482.1 non...	[more]
XP_004135897.1	1.5e-45	83.90	non-specific lipid-transfer protein 8 [Cucumis sativus] >KGN45185.1 hypothetical...	[more]
XP_008461223.1	1.7e-44	87.61	PREDICTED: non-specific lipid-transfer protein 8 [Cucumis melo]	[more]
XP_023514955.1	1.6e-39	77.12	non-specific lipid-transfer protein 8-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc09G03860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZPW9	1.8e-25	57.55	Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana OX=3702 GN=LTP8 PE...	[more]
Q43767	3.0e-20	47.62	Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare OX=4513 GN=LTP4.1 PE=...	[more]
Q42842	6.6e-20	47.62	Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare OX=4513 GN=LTP4.3 PE=...	[more]
Q43875	1.1e-19	46.67	Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare OX=4513 GN=LTP4.2 PE=...	[more]
A2ZAS9	2.1e-18	38.66	Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]

BLAST of Clc09G03860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UYN6	1.5e-46	87.18	Non-specific lipid-transfer protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0K657	7.3e-46	83.90	Non-specific lipid-transfer protein OS=Cucumis sativus OX=3659 GN=Csa_7G430200 P...	[more]
A0A1S3CEM4	8.0e-45	87.61	Non-specific lipid-transfer protein OS=Cucumis melo OX=3656 GN=LOC103499873 PE=3...	[more]
A0A6J1KW15	1.7e-39	84.16	Non-specific lipid-transfer protein OS=Cucurbita maxima OX=3661 GN=LOC111497697 ...	[more]
A0A6J1H5K9	1.7e-39	76.27	Non-specific lipid-transfer protein OS=Cucurbita moschata OX=3662 GN=LOC11146069...	[more]

BLAST of Clc09G03860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18370.1	1.3e-26	57.55	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G08770.1	4.1e-17	41.82	lipid transfer protein 6	[more]
AT3G08770.2	5.4e-17	43.40	lipid transfer protein 6	[more]
AT5G01870.1	2.7e-16	41.12	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT5G59320.1	2.3e-15	41.18	lipid transfer protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 89..106 score: 34.87 coord: 31..47 score: 40.36 coord: 52..66 score: 41.54 coord: 73..88 score: 46.44 coord: 107..118 score: 44.74
IPR000528	Plant non-specific lipid-transfer protein/Par allergen	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 2..119
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 32..116 e-value: 6.2E-12 score: 55.6
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 32..116 e-value: 4.1E-8 score: 33.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 29..119 e-value: 6.5E-28 score: 99.0
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 29..118
None	No IPR available	PANTHER	PTHR33076:SF62	NON-SPECIFIC LIPID-TRANSFER PROTEIN 8	coord: 2..119
None	No IPR available	CDD	cd01960	nsLTP1	coord: 30..117 e-value: 4.01158E-36 score: 118.221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G03860.2	Clc09G03860.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
molecular_function	GO:0008289	lipid binding