Clc09G02440 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G02440
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	thionin-like protein 2
Location	ClcChr09: 1958240 .. 1958676 (-)
RNA-Seq Expression	Clc09G02440
Synteny	Clc09G02440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAGGTTTCATTTTCATCATCATCAATGGAGAGCAGCATGGGAATGAAATGGGCTTTAATGGCTTGCCTGGTGCTTAGCTCGCTCTCCATTGCCAATTCTGTATCTTTTCAAGATTGCTACAGCTCCTGCTTCGTGGTATGCGCCGTCGCGCCCGGCATCGCCTTCTCCGACTGCCCCAAGAGATGTCTGAACACTTGCAATGGCGGATCTACCAAGCCGCAAGGGAAGGCTCACTAATCATAATATATAAGTTTTTATATATTTGTAATAATAAGGATTGATTTCTTCAATGCTTGAGTGGTTAGGAGCTCAATTCTTGGTAGTGTTCCCCCTTCACCAGGGTTTGGCTCCACCGTAATCATCTTTACTTTTAAATTTTATTTAATTTCATTTCTGAGATATATTTATACATTATTTTCATTTTCAAATTTAT

mRNA sequence

AACAAAGGTTTCATTTTCATCATCATCAATGGAGAGCAGCATGGGAATGAAATGGGCTTTAATGGCTTGCCTGGTGCTTAGCTCGCTCTCCATTGCCAATTCTGTATCTTTTCAAGATTGCTACAGCTCCTGCTTCGTGGTATGCGCCGTCGCGCCCGGCATCGCCTTCTCCGACTGCCCCAAGAGATGTCTGAACACTTGCAATGGCGGATCTACCAAGCCGCAAGGGAAGGCTCACTAATCATAATATATAAGTTTTTATATATTTGTAATAATAAGGATTGATTTCTTCAATGCTTGAGTGGTTAGGAGCTCAATTCTTGGTAGTGTTCCCCCTTCACCAGGGTTTGGCTCCACCGTAATCATCTTTACTTTTAAATTTTATTTAATTTCATTTCTGAGATATATTTATACATTATTTTCATTTTCAAATTTAT

Coding sequence (CDS)

ATGGAGAGCAGCATGGGAATGAAATGGGCTTTAATGGCTTGCCTGGTGCTTAGCTCGCTCTCCATTGCCAATTCTGTATCTTTTCAAGATTGCTACAGCTCCTGCTTCGTGGTATGCGCCGTCGCGCCCGGCATCGCCTTCTCCGACTGCCCCAAGAGATGTCTGAACACTTGCAATGGCGGATCTACCAAGCCGCAAGGGAAGGCTCACTAA

Protein sequence

MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTCNGGSTKPQGKAH

Homology

[Close]

BLAST of Clc09G02440 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 6.8e-14
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          ME+ +  KWALMA L+L+SLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 58

[Close]

BLAST of Clc09G02440 vs. NCBI nr
Match: XP_008461039.1 (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 6.8e-14
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          ME+ +  KWALMA L+L+SLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MENILAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 58

[Close]

BLAST of Clc09G02440 vs. NCBI nr
Match: XP_038899383.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 3.4e-13
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 5  MGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          M  KWAL+A L+LSSLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MAKKWALIAWLLLSSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 54

[Close]

BLAST of Clc09G02440 vs. NCBI nr
Match: XP_038896425.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 1.7e-12
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 1  MESSMGMKWALMACLVLSSLSI-----ANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCL 59
          MESSM MKWALMACL+LSSLSI     ANS  FQ+CYSSCF VC++ P I   DCP RCL
Sbjct: 1  MESSMAMKWALMACLLLSSLSIANSEPANSEPFQECYSSCFGVCSLGPSIYIFDCPLRCL 60

[Close]

BLAST of Clc09G02440 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 8  KWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          K  LMA LVLSSL+ ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 7  KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 57

[Close]

BLAST of Clc09G02440 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          ME+ +  KWALMA L+L+SLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 58

[Close]

BLAST of Clc09G02440 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.3e-14
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          ME+ +  KWALMA L+L+SLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MENILAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 58

[Close]

BLAST of Clc09G02440 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-11
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 8  KWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          K  LMA LVLSSL+ ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 7  KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 57

[Close]

BLAST of Clc09G02440 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-11
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 8  KWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          K  LMA LVLSSL+ ANS SFQ+CY++CF++CA+ PG+AFSDCP RCL  C
Sbjct: 7  KLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQAC 57

[Close]

BLAST of Clc09G02440 vs. ExPASy TrEMBL
Match: A0A0A0KAC5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441620 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1  MESS-MGMKWALMACLVLSSLSIANS-VSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          MESS MGMK AL A L LS LS+ANS  SFQDCY +C V CAV PGI  S+C KRC  TC
Sbjct: 1  MESSNMGMKCALTAWLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECLKRCFKTC 60

The following BLAST results are available for this feature:

BLAST of Clc09G02440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659556.1	6.8e-14	65.52	thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_01...	[more]
XP_008461039.1	6.8e-14	65.52	PREDICTED: thionin-like protein 2 [Cucumis melo]	[more]
XP_038899383.1	3.4e-13	68.52	thionin-like protein 2 [Benincasa hispida]	[more]
XP_038896425.1	1.7e-12	66.67	thionin-like protein 2 [Benincasa hispida]	[more]
XP_022953260.1	2.4e-11	68.63	thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein...	[more]

BLAST of Clc09G02440 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G02440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K781	3.3e-14	65.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1	[more]
A0A1S3CDU4	3.3e-14	65.52	thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1	[more]
A0A6J1GMH5	1.2e-11	68.63	thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1	[more]
A0A6J1JZ84	2.6e-11	66.67	thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1	[more]
A0A0A0KAC5	5.5e-09	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441620 PE=4 SV=1	[more]

BLAST of Clc09G02440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G02440.1	Clc09G02440.1	mRNA