Clc09G00590 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G00590
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
LocationClcChr09: 493326 .. 497064 (-)
RNA-Seq ExpressionClc09G00590
SyntenyClc09G00590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAAACACAGTAGAACCTAGACTCGGCCGTGTTCGGAGTTAATTCCGGCCCGATTTCCACCAATCTCCGCTGTGAATCCCGGCAATTCGCCGATGGCTCACCAGCCTTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGCAGCAACATCAACACGCTTTTCATCTCCGGTCTCCCTGATGACGTCAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTTTCGTTTCGTTTCCTTTTCTCTCCCCTTTCTTTCCGCTTTGGCCGTAGAAAGCGATTGTTAACGAGGAATAGGAAGAGGAGAATATAGAAGTGCTAAAAAGATGGGACAATTTTTAGGTCTGAGTTTAATTGAGTATTGTTTGAAAATGTATGAGAGGATGCTGTTGAGGCTAGGTTTTAATTTGTGATTCTAGCAGTTTTCGGCCTTCTCGAATTCGGATAGAGTACAGAATGATTGGGGATTTTGAGCTTCATCTGAGTTTATTTGTACAACGAGTAAGCCTAATTTTCTTCAATTTGTAAGAAGAACGTTTACTTCTTTGTCACTTCAAAGGAAATCGGTTGTCCTGCCATTCTTGTAAGTTTTGAGATATTATATATCAAATTGGTTGCCGTTTTTATACAGGTCCTTTTGTTTTCACAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCCGTCACAGCGCTTCATGCATTAAATGTAAGATCATGTGGTATACATAGTTCCATGTTTGAGTCTGATTTCTAATTCGTTCTGGAGCTTAGTTGATTTTGTTTATTTTTCTTTTCCATGTTGCATTTTGTTTCTCTAGCAGGTTCTGATAGTAGAATTTTGGTCAGTATTGTCAATTTTTAATGTTGAAACATAACGGTGGTGCTGTATCAGGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAGCATAAGCCAGGTGAGGGCTTCAAGATATGGATTTCCTGCTAGAGTCAAGTTATTATGCTAAGATGATCCATTTATCATGATCGGATCCAATGTTGCTCTATACAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGTGAAATGTTTTCACTCTCTAATATATAACATTTGTTTGTAGTATCATATTTTTCTCCAACGTGTTTGAAATGCACTTTTCATATTCACAACTGTCTTTTATTTTATTCATTATGTGGATTTGCATTATTTTTTTGCTTCCCTATTTATTTTCTCAACATGTAGTCTACATTTCACTTGCATATTTGCTGCCACACAATCTGAAATTTGGGGCTCACGTGCATATTTGATGGTCTGTTGTATATTCAGGAGGCAGTGAACCGGATGAACCATCAAAAAAGGCCGAACAAAGGTTCAAAAAGCATTAAATAAAAGTTAAATTACTCTATAATATTAGAAGATGTAGCATCACTGGGATATAAAATGTTATTAATTTCTTGCAAACATTTTCCCTTGAGGTTGAGTTCATTCTTGTCTAAACAATGCAGCAGCGAGGCTGTGGTGACTCCTGCTAATGCTCCATCTGCTCCATATGTACGTCAATCGATCTTCATTGTTAGGATTTAGGAACAATCCGTACTTGAATGCAATCTAATTTTGTATTGTAGTGTAAAAGTAAATATTTTTGCTGTGTAGCTGGTAGCCAATCTAGTCCACATCTGTTTACTTTTTGCCAATTATGTACACAGTTTATTATTTTTCAAGGTTTGAAAATTTTACTTTTGAATTTTAGTGTTTGCCCACAAATGAATAAGGTGATAAGTATTCTGAAGAAAATTGTTCAATACTAGTTTCAAAGTCGAGATTTTGTTAACATTTCCTCTTTCAAATTATTGACAGCTTGTTATTAGGGTTTGATCATGCAATACGATATGGTCTTTATTTTATGTTTGATTGCTGCAGGAGCATCATGAAAAGAACGATGGAGGACAATGCTCCACTTTGTTTATTGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTTTTGTGCAAGTGAGTTATACTCGCTCAGTGGTTCAGTAACAACCTTAGGGAGATTTATGAATTATGATAAAGCCAATTGGTATCTTATTCTCTCCTTTATTGCATCCATGATTCTTATTTCAGCGAGGCAGTGAGATGATCACATTACTTGATCATGTTAAATTCTCATTTTTAAAACTTTATGAACCTTATAAATCTCCCTAAGGTTCTTGGAGATTTATGAATTATGATAAAGCCAATTGGTATCTTATTCTCTGCATCCATGATTCTTATTTCAGCGAGGCAGTGAAATGATCACATTACTTGATCATGTTAAATTCTCATTTTTAAAACTTTATGAACCTTATATTTCTCTAAATCATTAGTAGTTTTACTTTTATGTAATGTATATTGCTAACAACACAATAAAATTGGTTTGCAAAAACTAGACAGATATTTGTAGACATATTTTGGGATTATTGGACCAGTTCATCTGCCTGTGATGAACTATTTCTTACATCTCAGACCTAAGTTATTTTTCTCGTTTAAGTACCTTGTTAATCAATGAAAATGAAGTAAAAAATTCTATTCTTTATGATAGAAGTTTTATGGTCACATTTTTACGATGCTAGATATCCTGGATTCAACGTTCTCAAATTGCGTGCGAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGTATGCAAGATTGCTTCTGGGAATTGTTGAGCTCTTACTATGCTCCAATTGTTCCTTACTCGTGGCCAAACATACTCCATTTTGAATTACAAGCACTGGTATGAGGATGAGTGGACTGCATTGCCTTCATTCTTCACTAAACCTAGTATTTGTTCACATTATTTTGTATACACAATTTTTTTCTTTTCTAGATGATCTAATGTACTATGTTACCATTGGGTTAAATTTTGCTTTAAATATATATAGATATAGAATTGAAAGGAAAATCTTGCTTTCAAAATTATTTCTTGTTTTTGTTTTTCTAGAACATCACACTTTCAGATCATGATCTTTGGTGGAGGAGCCCGTTTCAGAAGAAATTTCTGCCATTCTAACTATTCAAATGAGAAACTTTGAGCAATCAAATTTGTTTTTCCAAAAAAGGAAAAAATAAGGGGCTTCGATCACTCTTAAATATTCAATTTAGAAAGAACAAAGAAAAAATGAGGTTCATCTTGAATGCTTCATTACCTGTTTGTCTTGTTCCAGGACATTGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGCAGCGTGCTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATTTCTATTTAAATTACTTATCTATCTTTATTAATAGCTTCAACATATGATGACTAATTGATTGATCTCATGTTATTTTCTAGGTATGCTCGGTCTAAAATGAGGAAGTCTTAGTTGAAAAGCATTCATTGGTAGGGACTCACTACTTTGAAGTTTTGTTGCATTAATCAGTCCGTTATCGTTTCAAGTGCTTGCAAACTACACGTCATATAACTGCCTAAATATTGAAAATGGATTATGTGATCATGCACATTATAAGTAAATTATATAGTTGAGTATTGTAAAGTGTTGGTC

mRNA sequence

CACAAAACACAGTAGAACCTAGACTCGGCCGTGTTCGGAGTTAATTCCGGCCCGATTTCCACCAATCTCCGCTGTGAATCCCGGCAATTCGCCGATGGCTCACCAGCCTTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGCAGCAACATCAACACGCTTTTCATCTCCGGTCTCCCTGATGACGTCAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTTTAATTTGTGATTCTAGCAGTTTTCGGCCTTCTCGAATTCGGATAGAGTACAGAATGATTGGGGATTTTGAGCTTCATCTGAGTTTATTTGTACAACGAGTCCTTTTGTTTTCACAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCCGTCACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAGCATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATCAAAAAAGGCCGAACAAAGCAGCGAGGCTGTGGTGACTCCTGCTAATGCTCCATCTGCTCCATATGAGCATCATGAAAAGAACGATGGAGGACAATGCTCCACTTTGTTTATTGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTTTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCGAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGACATTGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGCAGCGTGCTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAGTTGAAAAGCATTCATTGGTAGGGACTCACTACTTTGAAGTTTTGTTGCATTAATCAGTCCGTTATCGTTTCAAGTGCTTGCAAACTACACGTCATATAACTGCCTAAATATTGAAAATGGATTATGTGATCATGCACATTATAAGTAAATTATATAGTTGAGTATTGTAAAGTGTTGGTC

Coding sequence (CDS)

ATGGCTCACCAGCCTTACGATCCTTACTATCTCTATAATCAACCGGACCCGACCTACAGTGACCGCAGCAACATCAACACGCTTTTCATCTCCGGTCTCCCTGATGACGTCAAGGCTCGCGAGATTCACAACCTCTTCCGCCGTAGGCCAGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTTTAATTTGTGATTCTAGCAGTTTTCGGCCTTCTCGAATTCGGATAGAGTACAGAATGATTGGGGATTTTGAGCTTCATCTGAGTTTATTTGTACAACGAGTCCTTTTGTTTTCACAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCCGTCACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGGAGAAAGCATAAGCCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAAACAGATGCCAATTCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATCAAAAAAGGCCGAACAAAGCAGCGAGGCTGTGGTGACTCCTGCTAATGCTCCATCTGCTCCATATGAGCATCATGAAAAGAACGATGGAGGACAATGCTCCACTTTGTTTATTGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTTTTGTGCAAATATCCTGGATTCAACGTTCTCAAATTGCGTGCGAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGACATTGAACAAGCTAGCAAGGTTATGGAGGAGCTTCAGGGCAGCGTGCTACCATCATCAGACCGCGGCGGCATGCATATAGAGTATGCTCGGTCTAAAATGAGGAAGTCTTAG

Protein sequence

MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGGSEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMRKS
Homology
[Close]
BLAST of Clc09G00590 vs. NCBI nr
Match: XP_038898771.1 (protein WHI4 isoform X1 [Benincasa hispida])

HSP 1 Score: 501.5 bits (1290), Expect = 5.0e-138
Identity = 258/302 (85.43%), Postives = 259/302 (85.76%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKKAEQS EA+VTPANA SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKAEQSGEALVTPANALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
           CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR
Sbjct: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. NCBI nr
Match: KAA0059439.1 (protein WHI4 [Cucumis melo var. makuwa] >TYK03885.1 protein WHI4 [Cucumis melo var. makuwa])

HSP 1 Score: 498.0 bits (1281), Expect = 5.5e-137
Identity = 256/302 (84.77%), Postives = 259/302 (85.76%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKKA+QS+EAVVTPA+A SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
           CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR
Sbjct: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. NCBI nr
Match: XP_004141677.1 (protein WHI4 [Cucumis sativus] >XP_031745300.1 protein WHI4 [Cucumis sativus] >XP_031745301.1 protein WHI4 [Cucumis sativus] >KGN45535.1 hypothetical protein Csa_016405 [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 7.2e-137
Identity = 256/302 (84.77%), Postives = 259/302 (85.76%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHLPYDPYYLYNQPDPTYSERSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKKA+QS+EAVVTPANA SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKAQQSNEAVVTPANAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
           CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR
Sbjct: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. NCBI nr
Match: XP_008462363.2 (PREDICTED: LOW QUALITY PROTEIN: protein WHI4 [Cucumis melo])

HSP 1 Score: 493.0 bits (1268), Expect = 1.8e-135
Identity = 254/302 (84.11%), Postives = 257/302 (85.10%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKK  ANSQETSSDDGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKPXANSQETSSDDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKKA+QS+EAVVTPA+A SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
           CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR
Sbjct: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. NCBI nr
Match: XP_023513427.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476.1 bits (1224), Expect = 2.3e-130
Identity = 244/302 (80.79%), Postives = 253/302 (83.77%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKK+D+N+QETSS+DGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKK EQS+EAVV P N  SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
            KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMR
Sbjct: 241 SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. ExPASy Swiss-Prot
Match: O74452 (Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=scw1 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-09
Identity = 29/95 (30.53%), Postives = 54/95 (56.84%), Query Frame = 0 

Query: 205 SAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADF 264
           S P   +  +    C+T+++ NL P+ +E+ELK +     G+  L  R K   P+ F +F
Sbjct: 411 STPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEF 470

Query: 265 EDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKM 300
           E+I  A + ++ LQG  L SS +GG+ + ++++ +
Sbjct: 471 ENIPYAMEALKNLQGVCLSSSIKGGIRLSFSKNPL 505

[Close]
BLAST of Clc09G00590 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-08
Identity = 36/124 (29.03%), Postives = 55/124 (44.35%), Query Frame = 0 

Query: 25  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVLICDSSSFRPSRIRIEYR 84
           + TLF+SGLP D+K RE++ LFR   G++   +K T +                      
Sbjct: 19  VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK---------------------- 78

Query: 85  MIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELAR 144
                               Q V F TF N   A  A +ALNG++FDP++   L +E A+
Sbjct: 79  --------------------QPVGFVTFDNRAGAEAAKNALNGIRFDPENPQTLRLEFAK 100

Query: 145 SNSR 149
           +N++
Sbjct: 139 ANTK 100

[Close]
BLAST of Clc09G00590 vs. ExPASy Swiss-Prot
Match: O59784 (RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mde7 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-08
Identity = 24/81 (29.63%), Postives = 47/81 (58.02%), Query Frame = 0 

Query: 219 CSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQ 278
           C+T+++ NL     E +L+    K  G+  L  + K   P+ F +FE++  A+K ME++Q
Sbjct: 601 CNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEKMQ 660

Query: 279 GSVLPSSDRGGMHIEYARSKM 300
           G+ L    +GG+ + Y+++ +
Sbjct: 661 GAALDDKIKGGIRLSYSKNPL 681

[Close]
BLAST of Clc09G00590 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-08
Identity = 37/136 (27.21%), Postives = 60/136 (44.12%), Query Frame = 0 

Query: 13  NQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVLICDSS 72
           ++ + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +          
Sbjct: 7   SETNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK---------- 66

Query: 73  SFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVTALHALNGVKFDP 132
                                           Q V F TF +   A  A +ALNG++FDP
Sbjct: 67  --------------------------------QPVGFVTFDSRSGAEAAKNALNGIRFDP 100

Query: 133 QSGSVLHIELARSNSR 149
           +S   L +E A++N++
Sbjct: 127 ESPQTLRLEFAKANTK 100

[Close]
BLAST of Clc09G00590 vs. ExPASy Swiss-Prot
Match: Q01617 (Protein couch potato OS=Drosophila melanogaster OX=7227 GN=cpo PE=2 SV=4)

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-08
Identity = 39/137 (28.47%), Postives = 56/137 (40.88%), Query Frame = 0 

Query: 18  TYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVLICDSSSFRPS 77
           T S+   + TLF+SGLP D K RE++ LFR   G++   LK T +  +            
Sbjct: 434 TASNEEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKT----------- 493

Query: 78  RIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVTALHALNGVKFDPQSGSV 137
                                     +  V F TF+    A  A   L GV+FDP     
Sbjct: 494 --------------------------ASPVGFVTFHTRAGAEAAKQDLQGVRFDPDMPQT 533

Query: 138 LHIELARSNSR-RKHKP 154
           + +E A+SN++  K KP
Sbjct: 554 IRLEFAKSNTKVSKPKP 533

[Close]
BLAST of Clc09G00590 vs. ExPASy TrEMBL
Match: A0A5A7V0X3 (Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 PE=4 SV=1)

HSP 1 Score: 498.0 bits (1281), Expect = 2.7e-137
Identity = 256/302 (84.77%), Postives = 259/302 (85.76%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKKA+QS+EAVVTPA+A SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
           CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR
Sbjct: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. ExPASy TrEMBL
Match: A0A0A0K772 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.5e-137
Identity = 256/302 (84.77%), Postives = 259/302 (85.76%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYS+RSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHLPYDPYYLYNQPDPTYSERSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKKA+QS+EAVVTPANA SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKAQQSNEAVVTPANAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
           CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR
Sbjct: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. ExPASy TrEMBL
Match: A0A1S3CHB2 (LOW QUALITY PROTEIN: protein WHI4 OS=Cucumis melo OX=3656 GN=LOC103500737 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 8.6e-136
Identity = 254/302 (84.11%), Postives = 257/302 (85.10%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAH PYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKK  ANSQETSSDDGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKPXANSQETSSDDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKKA+QS+EAVVTPA+A SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
           CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR
Sbjct: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. ExPASy TrEMBL
Match: A0A6J1D3Z3 (uncharacterized protein LOC111017052 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017052 PE=4 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.9e-130
Identity = 243/302 (80.46%), Postives = 252/302 (83.44%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 112 GRGN----------------------------------------QVVAFATFYNHQSAVT 171

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKK+D N+QETSSDDGG
Sbjct: 172 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGG 231

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKK E+SSEAV+TP+NA S PYEHHEK DGG CSTLFIANLGPNCNEDEL EVL
Sbjct: 232 SEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVL 291

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
            KYPGFNVLKLRAKSGMPVAFADFE++EQA KVMEELQGS+LPSSDRGGMHIEYARSKMR
Sbjct: 292 SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMR 313

Query: 301 KS 303
           KS
Sbjct: 352 KS 313

[Close]
BLAST of Clc09G00590 vs. ExPASy TrEMBL
Match: A0A6J1HI97 (protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.4e-130
Identity = 243/302 (80.46%), Postives = 253/302 (83.77%), Query Frame = 0 

Query: 1   MAHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60
           MAHQPYDPYYLY+QPD  YSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 61  GRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVT 120
           GRGN                                        QVVAFATFYNHQSAVT
Sbjct: 61  GRGN----------------------------------------QVVAFATFYNHQSAVT 120

Query: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 180
           ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKK+D+N+QETSS+DGG
Sbjct: 121 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDSNAQETSSEDGG 180

Query: 181 SEPDEPSKKAEQSSEAVVTPANAPSAPYEHHEKNDGGQCSTLFIANLGPNCNEDELKEVL 240
           SEPDEPSKK EQS+EAVV P N  SAPYEHHEKNDGG CSTLFIANLGPNCNEDELKEVL
Sbjct: 181 SEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVL 240

Query: 241 CKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYARSKMR 300
            KYPGFNVLKLRAKSGMPVAFADFE+IEQASKV+EELQGS+LPSSDRGGMHIEYARSKMR
Sbjct: 241 SKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGSMLPSSDRGGMHIEYARSKMR 262

Query: 301 KS 303
           KS
Sbjct: 301 KS 262

[Close]
BLAST of Clc09G00590 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-82
Identity = 175/323 (54.18%), Postives = 210/323 (65.02%), Query Frame = 0 

Query: 3   HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATF 122
           +SCQLKYTGRG+                                        QVVAFATF
Sbjct: 64  ESCQLKYTGRGD----------------------------------------QVVAFATF 123

Query: 123 YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQ 182
            +H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R K  + SQ
Sbjct: 124 TSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQ 183

Query: 183 ETSSDDGGSEPDE---------PSKKAEQSSEAVVTP-ANAPSAPYEHHEKNDGGQ---- 242
           +  SD+G S+PDE         P +     SEA   P + APSA     + ++GG     
Sbjct: 184 DDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARA 243

Query: 243 CSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQ 302
           CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMPVAFADFE+IEQA+  M  LQ
Sbjct: 244 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 286

[Close]
BLAST of Clc09G00590 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 297.4 bits (760), Expect = 1.3e-80
Identity = 172/315 (54.60%), Postives = 209/315 (66.35%), Query Frame = 0 

Query: 3   HQPYDPYYLY---NQPD------PTYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 62
           HQPYDP+Y+Y   + P       P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 63  DSCQLKYTGRGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATF 122
           +SCQLKYTGRG+QV  C +  F                    LF    +    VVAFATF
Sbjct: 64  ESCQLKYTGRGDQV--CKNLQF--------------------LFFFIPIFRKAVVAFATF 123

Query: 123 YNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQ 182
            +H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R K  + SQ
Sbjct: 124 TSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQ 183

Query: 183 ETSSDDGGSEPDE---------PSKKAEQSSEAVVTP-ANAPSAPYEHHEKNDGGQ---- 242
           +  SD+G S+PDE         P +     SEA   P + APSA     + ++GG     
Sbjct: 184 DDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARA 243

Query: 243 CSTLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQ 294
           CSTLFIANLGPNC EDELK++L +YPGF++LK+RA+ GMPVAFADFE+IEQA+  M  LQ
Sbjct: 244 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 296

[Close]
BLAST of Clc09G00590 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.5 bits (358), Expect = 5.5e-34
Identity = 102/306 (33.33%), Postives = 145/306 (47.39%), Query Frame = 0 

Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+   
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR--- 91

Query: 62  RGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVTA 121
                    S   +P                               AFA F + QSAV  
Sbjct: 92  --------SSDGAKP------------------------------FAFAVFSDLQSAVAV 151

Query: 122 LHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGGS 181
           +HALNG+ FD +  S LHI+LA+SN + K       +  + K K     S  T+++ G  
Sbjct: 152 MHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLK-----SWNTTTESGFG 211

Query: 182 EPDEPSKKAEQSSEAVVTPAN-------APSAPYEHHEKNDGGQCSTLFIANLGPNCNED 241
               P   +   +    +PA        A  AP           C TLFIAN+GPNC E 
Sbjct: 212 SFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPCPTLFIANMGPNCTEA 271

Query: 242 ELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGG-MHIE 300
           EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G  + ++
Sbjct: 272 ELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQ 285

[Close]
BLAST of Clc09G00590 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 137.5 bits (345), Expect = 1.8e-32
Identity = 101/307 (32.90%), Postives = 142/307 (46.25%), Query Frame = 0 

Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+   
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR--- 91

Query: 62  RGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVTA 121
                    S   +P                               AFA F + QSAV  
Sbjct: 92  --------SSDGAKP------------------------------FAFAVFSDLQSAVAV 151

Query: 122 LHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGGS 181
           +HALNG+ FD +  S LHI+LA+SN + K       +  + K K     S  T+++ G  
Sbjct: 152 MHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLK-----SWNTTTESGFG 211

Query: 182 EPDEPSKKAEQSSEAVVTPAN-------APSAPYEHHEKNDGGQCSTLFIANLGPNCNED 241
               P   +   +    +PA        A  AP           C TLFIAN+GPNC E 
Sbjct: 212 SFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPCPTLFIANMGPNCTEA 271

Query: 242 ELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEY 301
           EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G +    
Sbjct: 272 ELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQ 286

[Close]
BLAST of Clc09G00590 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 135.2 bits (339), Expect = 8.8e-32
Identity = 97/294 (32.99%), Postives = 136/294 (46.26%), Query Frame = 0 

Query: 2   AHQPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTG 61
           AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR  PG+++  L+   
Sbjct: 32  AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR--- 91

Query: 62  RGNQVLICDSSSFRPSRIRIEYRMIGDFELHLSLFVQRVLLFSQVVAFATFYNHQSAVTA 121
                    S   +P                               AFA F + QSAV  
Sbjct: 92  --------SSDGAKP------------------------------FAFAVFSDLQSAVAV 151

Query: 122 LHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGGS 181
           +HALNG+ FD +  S LHI+LA+SN + K       +  + K K     S  T+++ G  
Sbjct: 152 MHALNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESLKKLK-----SWNTTTESGFG 211

Query: 182 EPDEPSKKAEQSSEAVVTPAN-------APSAPYEHHEKNDGGQCSTLFIANLGPNCNED 241
               P   +   +    +PA        A  AP           C TLFIAN+GPNC E 
Sbjct: 212 SFQTPGMSSSAYNTIGYSPAQSQGIANVAGRAPTSRKPSKAADPCPTLFIANMGPNCTEA 271

Query: 242 ELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRG 289
           EL +V  +  GF  LK++   G PVAF DF+D+  +S+ +  LQG+VL SS  G
Sbjct: 272 ELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTG 273

The following BLAST results are available for this feature:
BLAST of Clc09G00590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898771.15.0e-13885.43protein WHI4 isoform X1 [Benincasa hispida][more]
KAA0059439.15.5e-13784.77protein WHI4 [Cucumis melo var. makuwa] >TYK03885.1 protein WHI4 [Cucumis melo v... [more]
XP_004141677.17.2e-13784.77protein WHI4 [Cucumis sativus] >XP_031745300.1 protein WHI4 [Cucumis sativus] >X... [more]
XP_008462363.21.8e-13584.11PREDICTED: LOW QUALITY PROTEIN: protein WHI4 [Cucumis melo][more]
XP_023513427.12.3e-13080.79U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo][more]
BLAST of Clc09G00590 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O744521.2e-0930.53Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
Q9YGP53.0e-0829.03RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2... [more]
O597843.9e-0829.63RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ... [more]
Q6DH133.9e-0827.21RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a... [more]
Q016176.6e-0828.47Protein couch potato OS=Drosophila melanogaster OX=7227 GN=cpo PE=2 SV=4[more]
BLAST of Clc09G00590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V0X32.7e-13784.77Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 P... [more]
A0A0A0K7723.5e-13784.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451410 PE=4 SV=1[more]
A0A1S3CHB28.6e-13684.11LOW QUALITY PROTEIN: protein WHI4 OS=Cucumis melo OX=3656 GN=LOC103500737 PE=4 S... [more]
A0A6J1D3Z31.9e-13080.46uncharacterized protein LOC111017052 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1HI972.4e-13080.46protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1[more]
BLAST of Clc09G00590 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13700.21.1e-8254.18RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G13700.11.3e-8054.60RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G42240.15.5e-3433.33RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G42240.31.8e-3232.90RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G42240.28.8e-3232.99RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 221..293
e-value: 2.7E-8
score: 43.5
coord: 27..141
e-value: 0.044
score: 18.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 222..284
e-value: 7.5E-10
score: 38.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 26..145
score: 9.729138
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 220..297
score: 11.622288
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 22..153
e-value: 3.1E-19
score: 70.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 217..302
e-value: 8.7E-19
score: 69.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..172
NoneNo IPR availablePANTHERPTHR10501:SF41PROTEIN COUCH POTATOcoord: 18..151
coord: 181..300
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 18..151
coord: 181..300
NoneNo IPR availableCDDcd12245RRM_scw1_likecoord: 219..296
e-value: 1.38214E-41
score: 136.951
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 105..282
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 10..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G00590.2Clc09G00590.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding