Clc09G00330 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G00330
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 289269 .. 289804 (-)
RNA-Seq ExpressionClc09G00330
SyntenyClc09G00330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAAATTTGGTTTGTGATAATGGCTCTACAAAGGTCTGGAAATGTTGTTTTTGTTGCTATTTTCATAGCTCTAATGGTGGTTTCTTCCCCTGATGTCATGCTAACTAGCTCCCATGCAGCTGGTTTGGCCAAAATAGGTGACCAAATTGCTACCATATTAATATTATTATGAAAATGTTTAAGTTTGAGGTTGCTTTAATTAGTACTTATTACATATAATTAATATATGAATTGAATGATTAATTGGGAGATTGATATATTGGCCGTATGGCTGCAGATCCACCGATGTGTCCTCAATGCATGTGTTGTAGCTCTCCACCACCAGGGTTTTGCTGTGATTGTTGCTCCAATTCTCAGCTGCCACCATGAAATCTTCATCAATCCAACTCAACATGCATCAATACTTTTAATCAACTGCTACTTACATCACTATCTCCTCTCTACTTCCACCTATCTCTATATTCATATATATATAATCTTTCAACAATATATAAGCTTTACTTACTTTCATTTTCCTTCTGCTATTCTATTTTTA

mRNA sequence

ATAAAATTTGGTTTGTGATAATGGCTCTACAAAGGTCTGGAAATGTTGTTTTTGTTGCTATTTTCATAGCTCTAATGGTGGTTTCTTCCCCTGATGTCATGCTAACTAGCTCCCATGCAGCTGGTTTGGCCAAAATAGATCCACCGATGTGTCCTCAATGCATGTGTTGTAGCTCTCCACCACCAGGGTTTTGCTGTGATTGTTGCTCCAATTCTCAGCTGCCACCATGAAATCTTCATCAATCCAACTCAACATGCATCAATACTTTTAATCAACTGCTACTTACATCACTATCTCCTCTCTACTTCCACCTATCTCTATATTCATATATATATAATCTTTCAACAATATATAAGCTTTACTTACTTTCATTTTCCTTCTGCTATTCTATTTTTA

Coding sequence (CDS)

ATGGCTCTACAAAGGTCTGGAAATGTTGTTTTTGTTGCTATTTTCATAGCTCTAATGGTGGTTTCTTCCCCTGATGTCATGCTAACTAGCTCCCATGCAGCTGGTTTGGCCAAAATAGATCCACCGATGTGTCCTCAATGCATGTGTTGTAGCTCTCCACCACCAGGGTTTTGCTGTGATTGTTGCTCCAATTCTCAGCTGCCACCATGA

Protein sequence

MALQRSGNVVFVAIFIALMVVSSPDVMLTSSHAAGLAKIDPPMCPQCMCCSSPPPGFCCDCCSNSQLPP
Homology
BLAST of Clc09G00330 vs. NCBI nr
Match: KAA0059465.1 (hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK03858.1 hypothetical protein E5676_scaffold347G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 8.8e-22
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 0

Query: 1  MALQR---SGNVVFVAIFIALMVVSSPDVML-TSSHAAGLAKIDPPMCPQCMCCSSPPPG 60
          MALQ+   + N+  VA+FI LMVVSSPD+ML T+SHAA LAKIDPPMCPQCMCCSSPPPG
Sbjct: 1  MALQQRCGNNNIGLVAVFIVLMVVSSPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPG 60

Query: 61 FCCDCCSNSQLPP 70
          FCCDCCSNSQLPP
Sbjct: 61 FCCDCCSNSQLPP 73

BLAST of Clc09G00330 vs. NCBI nr
Match: EEF46335.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 53.5 bits (127), Expect = 8.3e-04
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 12 VAIFIALMVVSSPDVMLTSSHAAGLAK--------IDPPMCPQCMCCSSPPPGFCCDCCS 69
          V IFI LMV+    +M+  ++AA  A+         + PMCPQC CCS+PPPG CC CC+
Sbjct: 11 VTIFIILMVL---PLMVPPANAARFAQQGIIEVSLKEEPMCPQCTCCSAPPPGSCCKCCT 70

BLAST of Clc09G00330 vs. ExPASy TrEMBL
Match: A0A0A0K9Q7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452240 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 62/72 (86.11%), Postives = 65/72 (90.28%), Query Frame = 0

Query: 1  MALQRSG-NVVFVAIFIALMVVSS-PDVML-TSSHAAGLAKIDPPMCPQCMCCSSPPPGF 60
          MALQR G NV FVA+FI LMVVSS PD+ML T+SHAA LAKIDPPMCPQCMCCSSPPPGF
Sbjct: 1  MALQRCGNNVGFVAVFIVLMVVSSAPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPGF 60

Query: 61 CCDCCSNSQLPP 70
          CCDCCSNSQLPP
Sbjct: 61 CCDCCSNSQLPP 72

BLAST of Clc09G00330 vs. ExPASy TrEMBL
Match: A0A5D3BXX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00520 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 58/73 (79.45%), Postives = 64/73 (87.67%), Query Frame = 0

Query: 1  MALQR---SGNVVFVAIFIALMVVSSPDVML-TSSHAAGLAKIDPPMCPQCMCCSSPPPG 60
          MALQ+   + N+  VA+FI LMVVSSPD+ML T+SHAA LAKIDPPMCPQCMCCSSPPPG
Sbjct: 1  MALQQRCGNNNIGLVAVFIVLMVVSSPDLMLITTSHAARLAKIDPPMCPQCMCCSSPPPG 60

Query: 61 FCCDCCSNSQLPP 70
          FCCDCCSNSQLPP
Sbjct: 61 FCCDCCSNSQLPP 73

BLAST of Clc09G00330 vs. ExPASy TrEMBL
Match: B9RQ96 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486940 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.0e-04
Identity = 31/65 (47.69%), Postives = 40/65 (61.54%), Query Frame = 0

Query: 12 VAIFIALMVVSSPDVMLTSSHAAGLAK--------IDPPMCPQCMCCSSPPPGFCCDCCS 69
          V IFI LMV+    +M+  ++AA  A+         + PMCPQC CCS+PPPG CC CC+
Sbjct: 11 VTIFIILMVL---PLMVPPANAARFAQQGIIEVSLKEEPMCPQCTCCSAPPPGSCCKCCT 70

BLAST of Clc09G00330 vs. ExPASy TrEMBL
Match: A0A067L0T4 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24827 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.9e-04
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 0

Query: 10 VFVAIFIALMVVSSP---DVMLTSSHAAGLAKIDPPMCPQCMCCSSPPPGFCCDCCS 64
          V + +FI  MV+S     +     +H  GL + D P CP C+CCS PPPG CCDCC+
Sbjct: 9  VLLTLFIFAMVLSPMMPCEAARAPNHNRGLLQTDEPFCPACVCCSPPPPGSCCDCCA 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059465.18.8e-2279.45hypothetical protein E6C27_scaffold242G001950 [Cucumis melo var. makuwa] >TYK038... [more]
EEF46335.18.3e-0447.69conserved hypothetical protein [Ricinus communis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9Q71.1e-2286.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452240 PE=4 SV=1[more]
A0A5D3BXX84.3e-2279.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
B9RQ964.0e-0447.69Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1486940 PE=4 SV=1[more]
A0A067L0T48.9e-0445.61Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24827 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G00330.1Clc09G00330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane