Clc08G16550 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G16550
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionglutamate receptor 2.5-like
LocationClcChr08: 27025831 .. 27026491 (-)
RNA-Seq ExpressionClc08G16550
SyntenyClc08G16550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAACCACTTGTCAAAAAAACCTAACAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTTCATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTTCTGGTAATCCTCCTTCAACTCTCTTCAAAAACTTAAATTACTTGATTTAATTTACATGTTTATGATTGTTACAAACGATGATTTTATCATTTTAAGACCGGTTTGGATTCACTTTTTCTAATATGTTTAAAAACACTTTTATGTACTAAGAAATAAATTCTTGATTAACATTTAAAAATCAATCCAAATAGATTTGTAATCTTCAAATTTTCTTGATCACTCGGTCTCCCTTCTATAACTGGTGTGTTGAATTACTCGCCAACCCCCAAGCTAAGACTTATGGACTATGCATGATGAATTTGATATTATATCAACATTATAACAGCTTGTTATGTTTTCATAATCTTCATAATCCTCGTTTTCCATGGAGCTATCTAA

mRNA sequence

ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAACCACTTGTCAAAAAAACCTAACAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTTCATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTTCTGCTTGTTATGTTTTCATAATCTTCATAATCCTCGTTTTCCATGGAGCTATCTAA

Coding sequence (CDS)

ATGCTTGGTAATGGGTTCTGCTGCCCCTCCTTTCTGGGGTTGGTGTTATTGCTTCTATTGTTGGGCTCAGAAGCTCATACAAGCAAAAAAGAAACCACTTGTCAAAAAAACCTAACAATAACTACAAGAATTGGAGTGGTTCTTGATAGTGGGTCTCAAATTGGGAAGCAACAGATGGTGGCAATGAAAATGGGTTTAAAGGACTTTCATTTGGCTTCTTCATGTGTTAAGTTGGAGCTTCTCCTCCATGATTCTAACCCAAACTTTACTTCCCCACATTCTTCTGCTTGTTATGTTTTCATAATCTTCATAATCCTCGTTTTCCATGGAGCTATCTAA

Protein sequence

MLGNGFCCPSFLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQMVAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFIIFIILVFHGAI
Homology
[Close]
BLAST of Clc08G16550 vs. NCBI nr
Match: XP_038884568.1 (glutamate receptor 2.5-like [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 81/100 (81.00%), Postives = 86/100 (86.00%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQM 60
           MLGNGFCC S FLGLVLL LLLGSEAHTSKKE TCQK+     R+GV+ DSGSQIGKQQM
Sbjct: 1   MLGNGFCCSSFFLGLVLLFLLLGSEAHTSKKELTCQKDNRTNPRVGVIFDSGSQIGKQQM 60

Query: 61  VAMKMGLKDFHLASSCV--KLELLLHD-SNPNFTSPHSSA 97
           VAMKMGL+DFHLASSCV  KLELLLHD S+PNFTSP SSA
Sbjct: 61  VAMKMGLRDFHLASSCVKYKLELLLHDYSHPNFTSPPSSA 100

[Close]
BLAST of Clc08G16550 vs. NCBI nr
Match: XP_011650184.1 (glutamate receptor 2.5 [Cucumis sativus] >KAE8652079.1 hypothetical protein Csa_018741 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-27
Identity = 73/101 (72.28%), Postives = 82/101 (81.19%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTRIGVVLDSGSQIG 60
           M+GNGFCC S FLGLV L+L LGSEAH ++KE   CQ+NL I   T RIGVV DSGSQIG
Sbjct: 1   MVGNGFCCSSFFLGLVFLVLFLGSEAHKNQKELNYCQRNLAINNGTARIGVVFDSGSQIG 60

Query: 61  KQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHSS 96
           KQQ+VA+KMGL+DFHLA SSC KLELLLHDS+PN TS  SS
Sbjct: 61  KQQIVAIKMGLRDFHLASSSCAKLELLLHDSHPNSTSSPSS 101

[Close]
BLAST of Clc08G16550 vs. NCBI nr
Match: XP_022997541.1 (glutamate receptor 2.5-like [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 0 

Query: 9   PSFLGLVLLLLLLGSEAHTSKKETTCQKNLT--ITTRIGVVLDSGSQIGKQQMVAMKMGL 68
           P FLGL+LLLLL  SEAHT+KK    QKN T   TTRIGVV DSGSQIGKQQ VAMKMGL
Sbjct: 11  PCFLGLLLLLLLPSSEAHTTKKGLKGQKNPTNNKTTRIGVVFDSGSQIGKQQKVAMKMGL 70

Query: 69  KDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFI 102
           + FHL+SS  KLELLLHDS+PNFTSP SSA  + I
Sbjct: 71  RLFHLSSSSHKLELLLHDSHPNFTSPTSSAVDLMI 105

[Close]
BLAST of Clc08G16550 vs. NCBI nr
Match: KAG6598369.1 (Glutamate receptor 2.5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 69/102 (67.65%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQM 60
           +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ 
Sbjct: 2   VLRNAFCRPSCFLGLLLLLLLLSSEAHTTNNK---------TTRIGVVFDSGSQIGKQQK 61

Query: 61  VAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFI 102
           VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP SSA  + I
Sbjct: 62  VAMKMGLRLFHLSSSCHKLELLLHDSHSNFTSPTSSAVDLMI 94

[Close]
BLAST of Clc08G16550 vs. NCBI nr
Match: XP_022962557.1 (glutamate receptor 2.5-like [Cucurbita moschata])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 67/96 (69.79%), Postives = 74/96 (77.08%), Query Frame = 0 

Query: 1  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQM 60
          +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ 
Sbjct: 2  VLRNAFCRPSCFLGLLLLLLLLSSEAHTTNNK---------TTRIGVVFDSGSQIGKQQK 61

Query: 61 VAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSS 96
          VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP SS
Sbjct: 62 VAMKMGLRLFHLSSSCHKLELLLHDSHSNFTSPTSS 88

[Close]
BLAST of Clc08G16550 vs. ExPASy TrEMBL
Match: A0A0A0LKV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357230 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTRIGVVLDSGSQIG 60
           M+GNGFCC S FLGLV L+L LGSEAH ++KE   CQ+NL I   T RIGVV DSGSQIG
Sbjct: 1   MVGNGFCCSSFFLGLVFLVLFLGSEAHKNQKELNYCQRNLAINNGTARIGVVFDSGSQIG 60

Query: 61  KQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHSSA 97
           KQQ+VA+KMGL+DFHLA SSC KLELLLHDS+PN TS  SS+
Sbjct: 61  KQQIVAIKMGLRDFHLASSSCAKLELLLHDSHPNSTSSPSSS 102

[Close]
BLAST of Clc08G16550 vs. ExPASy TrEMBL
Match: A0A6J1K7S1 (glutamate receptor 2.5-like OS=Cucurbita maxima OX=3661 GN=LOC111492435 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 69/95 (72.63%), Postives = 75/95 (78.95%), Query Frame = 0 

Query: 9   PSFLGLVLLLLLLGSEAHTSKKETTCQKNLT--ITTRIGVVLDSGSQIGKQQMVAMKMGL 68
           P FLGL+LLLLL  SEAHT+KK    QKN T   TTRIGVV DSGSQIGKQQ VAMKMGL
Sbjct: 11  PCFLGLLLLLLLPSSEAHTTKKGLKGQKNPTNNKTTRIGVVFDSGSQIGKQQKVAMKMGL 70

Query: 69  KDFHLASSCVKLELLLHDSNPNFTSPHSSACYVFI 102
           + FHL+SS  KLELLLHDS+PNFTSP SSA  + I
Sbjct: 71  RLFHLSSSSHKLELLLHDSHPNFTSPTSSAVDLMI 105

[Close]
BLAST of Clc08G16550 vs. ExPASy TrEMBL
Match: A0A6J1HD04 (glutamate receptor 2.5-like OS=Cucurbita moschata OX=3662 GN=LOC111462955 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 67/96 (69.79%), Postives = 74/96 (77.08%), Query Frame = 0 

Query: 1  MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETTCQKNLTITTRIGVVLDSGSQIGKQQM 60
          +L N FC PS FLGL+LLLLLL SEAHT+  +         TTRIGVV DSGSQIGKQQ 
Sbjct: 2  VLRNAFCRPSCFLGLLLLLLLLSSEAHTTNNK---------TTRIGVVFDSGSQIGKQQK 61

Query: 61 VAMKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSS 96
          VAMKMGL+ FHL+SSC KLELLLHDS+ NFTSP SS
Sbjct: 62 VAMKMGLRLFHLSSSCHKLELLLHDSHSNFTSPTSS 88

[Close]
BLAST of Clc08G16550 vs. ExPASy TrEMBL
Match: A0A1S3BAP7 (glutamate receptor 2.5-like OS=Cucumis melo OX=3656 GN=LOC103487885 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.2e-23
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MLGNGFCCPS-FLGLVLLLLLLGSEAHTSKKETT-CQKNLTI---TTR-IGVVLDSGSQI 60
           M+ NGF   S FLGLV L+L LGSEAHT++KE   CQKNL I   T R IG+V DSGSQI
Sbjct: 1   MVANGFWGSSFFLGLVFLVLFLGSEAHTNQKELNYCQKNLAINNVTARIIGLVSDSGSQI 60

Query: 61  GKQQMVAMKMGLKDFHLA-SSCVKLELLLHDSNPNFTSPHSSA 97
           GKQQ+VA+KMGL+DF LA SSCVKLELLLHDS+PN TS  SSA
Sbjct: 61  GKQQIVAIKMGLRDFSLASSSCVKLELLLHDSHPNLTSSPSSA 103

[Close]
BLAST of Clc08G16550 vs. ExPASy TrEMBL
Match: A0A6J1K353 (glutamate receptor 2.5-like OS=Cucurbita maxima OX=3661 GN=LOC111491966 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 65/95 (68.42%), Postives = 71/95 (74.74%), Query Frame = 0 

Query: 6   FCCPSF-LGLVLLLLLLGSEAHTSKKETTCQKN---LTITTRIGVVLDSGSQIGKQQMVA 65
           FC  SF LGL+LL   LGSEA TSK    CQ N      TTRIGVV DSGSQ+GKQQ+VA
Sbjct: 9   FCRLSFILGLLLLSSSLGSEALTSKSILNCQTNPKPNDKTTRIGVVFDSGSQLGKQQLVA 68

Query: 66  MKMGLKDFHLASSCVKLELLLHDSNPNFTSPHSSA 97
           MKMGL  FHL+SSC+KLELLLHDS+ N TSP SSA
Sbjct: 69  MKMGLSHFHLSSSCLKLELLLHDSHQNLTSPPSSA 103

The following BLAST results are available for this feature:
BLAST of Clc08G16550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038884568.11.4e-3281.00glutamate receptor 2.5-like [Benincasa hispida][more]
XP_011650184.18.6e-2772.28glutamate receptor 2.5 [Cucumis sativus] >KAE8652079.1 hypothetical protein Csa_... [more]
XP_022997541.11.2e-2372.63glutamate receptor 2.5-like [Cucurbita maxima][more]
KAG6598369.12.0e-2367.65Glutamate receptor 2.5, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022962557.14.4e-2369.79glutamate receptor 2.5-like [Cucurbita moschata][more]
BLAST of Clc08G16550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc08G16550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKV13.2e-2771.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357230 PE=4 SV=1[more]
A0A6J1K7S15.6e-2472.63glutamate receptor 2.5-like OS=Cucurbita maxima OX=3661 GN=LOC111492435 PE=3 SV=... [more]
A0A6J1HD042.1e-2369.79glutamate receptor 2.5-like OS=Cucurbita moschata OX=3662 GN=LOC111462955 PE=3 S... [more]
A0A1S3BAP76.2e-2369.90glutamate receptor 2.5-like OS=Cucumis melo OX=3656 GN=LOC103487885 PE=3 SV=1[more]
A0A6J1K3532.0e-2168.42glutamate receptor 2.5-like OS=Cucurbita maxima OX=3661 GN=LOC111491966 PE=3 SV=... [more]
BLAST of Clc08G16550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G16550.2Clc08G16550.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034220 ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015276 ligand-gated ion channel activity