Clc08G15880 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G15880
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Location	ClcChr08: 26590789 .. 26591906 (+)
RNA-Seq Expression	Clc08G15880
Synteny	Clc08G15880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTTGGTTCTCTTTAGGTTATCCAATTGCTTTCTGCTGGTAGCAGGAATTTTTTCGATCCCGAAGAATTTGTCTGTTGAATTTCGTGGATTTCTTCTTTTATCTCAAATTTGTGGTGTAATGTGATTTAATAGGTGGGGTGTGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAGATGAATGGGTCCATTAGGGCTTATATTACTTCGTGGTGTTTAGTGTATTCAATCTCTAATATAAGAATTCAAAAGAAAAGAATCTGCTGGTACATTGTCAAAAAGAAAGAATCTGCTGGTAATCGTCTTGATTAGTCTTACTGTATGTTGAAATGGACATCGACTTTCTATGCTTTGGCATGGTGAACATCAGCTGACATGCTTATGCAATTGTATTTGAAGGTTTCCATTTATGCATATATATATATACACACACACATTTATTTGCTGAC

mRNA sequence

ATGATGGTGGGGTGTGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAGATGAATGGGTCCATTAGGGCTTATATTACTTCGTGGTGTTTAGTGTATTCAATCTCTAATATAAGAATTCAAAAGAAAAGAATCTGCTGGTACATTGTCAAAAAGAAAGAATCTGCTGGTAATCGTCTTGATTAGTCTTACTGTATGTTGAAATGGACATCGACTTTCTATGCTTTGGCATGGTGAACATCAGCTGACATGCTTATGCAATTGTATTTGAAGGTTTCCATTTATGCATATATATATATACACACACACATTTATTTGCTGAC

Coding sequence (CDS)

ATGATGGTGGGGTGTGTAGATATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCTCAAAGCCCTTCTTGTTCCGACAACAATGGTGATGCCAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTTTGCGGTCATCTTTTCTGTTGGCCATGCCTTTATAAGTGGCTGCATATTCATTCCCATCCCCAGGAATGTCCAGTTTGCAAGGCTATCATAGAAGAGCAAAAATTGGTTCCTTTATATGGTAGGGGTAAGACATCAACTGACCCAAGATCAAAAAGTATTCCTGGAATTAATATTCCTAATCGTCCTGCGGGACAGAGACCTGAAGCAGCAGGTCCTCCCCCAGAACCAAATCCTTTTCCTCACAATGGTTTTGGATTCATGGGAGGTCTTGGAGGGTTTGCCCCAATGGCATCGACAAGGTTTGGCAATTTCACGTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGTCACGGCCATGGATACTATCACCAGCTCCGTCAAGGTCAGCAAGATTATTATCTGAAGCGGCTGCTTCTGTTTATTGGTTTTTGTGTTCTTCTTGCCCTAATCTGGCAATAG

Protein sequence

MMVGCVDMASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ

Homology

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BLAST of Clc08G15880 vs. NCBI nr
Match: XP_038884023.1 (E3 ubiquitin ligase rnf-5 [Benincasa hispida])

HSP 1 Score: 486.5 bits (1251), Expect = 1.3e-133
Identity = 229/230 (99.57%), Postives = 229/230 (99.57%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           FPYGFPNMFHGSHGH HGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

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BLAST of Clc08G15880 vs. NCBI nr
Match: KAG6598412.1 (E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 484.6 bits (1246), Expect = 5.0e-133
Identity = 228/235 (97.02%), Postives = 229/235 (97.45%), Query Frame = 0


Query: 3   VGCVDMASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 62
           VGC DMASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY
Sbjct: 12  VGCADMASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 71

Query: 63  KWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAG 122
           KWLHIHSHPQECPVCKA+IEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAG
Sbjct: 72  KWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAG 131

Query: 123 PPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMY 182
           PPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMY
Sbjct: 132 PPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMY 191

Query: 183 GAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           GAGAN PYGFPNMFHGSHGH HGYYH LRQGQQDYYLKRLLLFIGFCVLLALIWQ
Sbjct: 192 GAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 246

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BLAST of Clc08G15880 vs. NCBI nr
Match: XP_004152714.1 (E3 ubiquitin ligase rnf-5 [Cucumis sativus] >XP_011649602.1 E3 ubiquitin ligase rnf-5 [Cucumis sativus] >KGN62568.1 hypothetical protein Csa_022553 [Cucumis sativus])

HSP 1 Score: 476.5 bits (1225), Expect = 1.4e-130
Identity = 225/230 (97.83%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           M SGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MESGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           FPYGFPNMFHGSHGH HGYYHQLRQGQQDYYLKRLL  IGF VLLALIWQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLFLIGFFVLLALIWQ 230

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BLAST of Clc08G15880 vs. NCBI nr
Match: XP_008444676.1 (PREDICTED: RING finger protein 5 [Cucumis melo] >XP_008444677.1 PREDICTED: RING finger protein 5 [Cucumis melo] >KAA0065261.1 RING finger protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 476.1 bits (1224), Expect = 1.8e-130
Identity = 225/230 (97.83%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           MASG GESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGLGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSK IPGINIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKGIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           FPYGFPNMFHGSHGH HGYYHQLRQGQQDYYLKRLLL IGF VLLALIWQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLLIGFFVLLALIWQ 230

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BLAST of Clc08G15880 vs. NCBI nr
Match: XP_023547002.1 (E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >XP_023547003.1 E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >KAG7029364.1 RING finger protein 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 475.3 bits (1222), Expect = 3.0e-130
Identity = 224/230 (97.39%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKA+IEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
            PYGFPNMFHGSHGH HGYYH LRQGQQDYYLKRLLLFIGFCVLLALIWQ
Sbjct: 181 VPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

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BLAST of Clc08G15880 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.7e-31
Identity = 89/242 (36.78%), Postives = 120/242 (49.59%), Query Frame = 0


Query: 16  TSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECP 75
           T    + P+ S N  +++ FECNICLD A+D +V+LCGHLFCWPCL +WL    + Q CP
Sbjct: 5   TKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCP 64

Query: 76  VCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGF 135
           VCK+ I+  K+VP+YGRG  S+DPR K      +P RP GQR E     P P  F    +
Sbjct: 65  VCKSAIDGNKVVPIYGRGGDSSDPRKK------VPPRPKGQRSE-----PPPQSFAGFNW 124

Query: 136 GFMGG-LGGFAPMASTRFGNFTLSAAF---------GGLVPSLFNFQMHGYADPSMYGAG 195
           G  GG +GG  P     FG  T++  F          G+ P  F     G  +     AG
Sbjct: 125 GGDGGMMGGGGPNVHFSFGIGTVNGLFPLMFMLPFIQGIFPLSFVASFFGNGNQGAAAAG 184

Query: 196 ANFPYGFPNMFHGSHGHGHGYYH-----------QLRQGQQDYYLKRLLLFIGFCVLLAL 237
                G      G+H H HG+ H             R  Q++ YL  +  +IGF +L  L
Sbjct: 185 GGNGGGNDGN-DGTHAHTHGHTHGPRGHGESAAPGSRMAQEEEYLSNIFKYIGFFMLFWL 234

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BLAST of Clc08G15880 vs. ExPASy Swiss-Prot
Match: Q5ZIR9 (E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-26
Identity = 67/130 (51.54%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 16  TSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECP 75
           TS    S    DN    + FECNICLD A+D +++LCGHLFCWPCL++WL    + Q CP
Sbjct: 20  TSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCP 79

Query: 76  VCKAIIEEQKLVPLYGRGKT-STDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNG 135
           VCKA I   K++PLYGRG T   DPR K+      P RP GQRPE     PE N     G
Sbjct: 80  VCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE-----PE-NRGGFQG 135

Query: 136 FGFMGGLGGF 145
           FGF  G GGF
Sbjct: 140 FGF--GDGGF 135

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BLAST of Clc08G15880 vs. ExPASy Swiss-Prot
Match: Q96GF1 (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.5e-26
Identity = 72/143 (50.35%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 13  GESTSRQPQS-----PSCSDN-----NGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 72
           G S S  P++     PS S N      G  S FECNICLD A+D +++LCGHLFCWPCL+
Sbjct: 5   GPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLH 64

Query: 73  KWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKT-STDPRSKSIPGINIPNRPAGQRPEAA 132
           +WL    + Q CPVCKA I   K++PLYGRG T   DPR K+      P RP GQRPE  
Sbjct: 65  QWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE-- 124

Query: 133 GPPPEPNPFPHNGFGFMGGLGGF 145
              PE N     GFGF  G GGF
Sbjct: 125 ---PE-NRGGFQGFGF--GDGGF 133

[Close]

BLAST of Clc08G15880 vs. ExPASy Swiss-Prot
Match: Q5RFK9 (E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.5e-26
Identity = 72/143 (50.35%), Postives = 84/143 (58.74%), Query Frame = 0


Query: 13  GESTSRQPQS-----PSCSDN-----NGDASNFECNICLDLAQDPIVTLCGHLFCWPCLY 72
           G S S  P++     PS S N      G  S FECNICLD A+D +++LCGHLFCWPCL+
Sbjct: 5   GPSASSSPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLH 64

Query: 73  KWLHIHSHPQECPVCKAIIEEQKLVPLYGRGKT-STDPRSKSIPGINIPNRPAGQRPEAA 132
           +WL    + Q CPVCKA I   K++PLYGRG T   DPR K+      P RP GQRPE  
Sbjct: 65  QWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE-- 124

Query: 133 GPPPEPNPFPHNGFGFMGGLGGF 145
              PE N     GFGF  G GGF
Sbjct: 125 ---PE-NRGGFQGFGF--GDGGF 133

[Close]

BLAST of Clc08G15880 vs. ExPASy Swiss-Prot
Match: Q91YT2 (E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-25
Identity = 65/124 (52.42%), Postives = 77/124 (62.10%), Query Frame = 0


Query: 22  SPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAII 81
           S    ++ G  S FECNICLD A+D +++LCGHLFCWPCL++WL    + Q CPVCKA I
Sbjct: 24  SNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGI 83

Query: 82  EEQKLVPLYGRGKT-STDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGG 141
              K++PLYGRG T   DPR K+      P RP GQRPE     PE N     GFGF  G
Sbjct: 84  SRDKVIPLYGRGSTGQQDPREKT------PPRPQGQRPE-----PE-NRGGFQGFGF--G 133

Query: 142 LGGF 145
            GGF
Sbjct: 144 DGGF 133

[Close]

BLAST of Clc08G15880 vs. ExPASy TrEMBL
Match: A0A0A0LLD2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G360850 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 6.6e-131
Identity = 225/230 (97.83%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           M SGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MESGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           FPYGFPNMFHGSHGH HGYYHQLRQGQQDYYLKRLL  IGF VLLALIWQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLFLIGFFVLLALIWQ 230

[Close]

BLAST of Clc08G15880 vs. ExPASy TrEMBL
Match: A0A1S3BBQ8 (RING finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103487942 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 8.6e-131
Identity = 225/230 (97.83%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           MASG GESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGLGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSK IPGINIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKGIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           FPYGFPNMFHGSHGH HGYYHQLRQGQQDYYLKRLLL IGF VLLALIWQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLLIGFFVLLALIWQ 230

[Close]

BLAST of Clc08G15880 vs. ExPASy TrEMBL
Match: A0A5A7VHN4 (RING finger protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006030 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 8.6e-131
Identity = 225/230 (97.83%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           MASG GESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGLGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSK IPGINIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKGIPGINIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           FPYGFPNMFHGSHGH HGYYHQLRQGQQDYYLKRLLL IGF VLLALIWQ
Sbjct: 181 FPYGFPNMFHGSHGHAHGYYHQLRQGQQDYYLKRLLLLIGFFVLLALIWQ 230

[Close]

BLAST of Clc08G15880 vs. ExPASy TrEMBL
Match: A0A6J1GGW7 (RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 1.9e-130
Identity = 225/234 (96.15%), Postives = 227/234 (97.01%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKA+IEEQKLVPLYGRGKTSTDPRSKSIPG+NIPNRPAGQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPF HNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFAHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHG----HGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
           FPYGFPNMFHGSHGHG    HGYYH LRQGQQDYYLKRLL FIGFCVLLALIWQ
Sbjct: 181 FPYGFPNMFHGSHGHGHAHAHGYYHHLRQGQQDYYLKRLLFFIGFCVLLALIWQ 234

[Close]

BLAST of Clc08G15880 vs. ExPASy TrEMBL
Match: A0A6J1HCN0 (E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC111462860 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.3e-130
Identity = 223/230 (96.96%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 8   MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 67
           MASGFGESTSRQPQ PS SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI
Sbjct: 1   MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHI 60

Query: 68  HSHPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP 127
           HSHPQECPVCKA+IEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRP+GQRPEAAGPPPEP
Sbjct: 61  HSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPSGQRPEAAGPPPEP 120

Query: 128 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 187
           NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN
Sbjct: 121 NPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN 180

Query: 188 FPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIWQ 238
            PYGFPNMFHGSHGH HGYYH LRQGQQDYYLKRLLLFIGFCVLLALIWQ
Sbjct: 181 VPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230

[Close]

BLAST of Clc08G15880 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 292.0 bits (746), Expect = 4.4e-79
Identity = 147/220 (66.82%), Postives = 171/220 (77.73%), Query Frame = 0


Query: 23  PSCSD----NNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCK 82
           PSCS     NN D+SNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLH+HS  ++CPVCK
Sbjct: 5   PSCSSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQSKDCPVCK 64

Query: 83  AIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFM 142
           A+IEE +LVPLYGRGK+S DPRSKSIPG+ +PNRP+GQRPE A PP   + F H+  GF 
Sbjct: 65  AVIEEDRLVPLYGRGKSSADPRSKSIPGLEVPNRPSGQRPETAQPPDPNHGFAHH-HGFG 124

Query: 143 GGLGGF-APMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGAN--FPYGFPNM 202
           G +GGF APMAS RFGN TLSAAFGGL+PSLFN   HG+ D +MYGA A+  FP+GF N 
Sbjct: 125 GFMGGFAAPMASARFGNVTLSAAFGGLIPSLFNLHFHGFPDAAMYGAAASGGFPHGFSNP 184

Query: 203 FHGSHGHGHGYY-HQLRQGQQDYYLKRLLLFIGFCVLLAL 235
           FHG H H H Y  H  RQGQQD++L+ LLL +   V+ +L
Sbjct: 185 FHGGHSHMHSYQRHTGRQGQQDHHLRILLLIVFVVVVFSL 223

[Close]

BLAST of Clc08G15880 vs. TAIR 10
Match: AT2G23780.1 (RING/U-box superfamily protein )

HSP 1 Score: 257.7 bits (657), Expect = 9.2e-69
Identity = 130/228 (57.02%), Postives = 158/228 (69.30%), Query Frame = 0


Query: 13  GESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQ 72
           GES++    S S +D N    +FECNIC +LAQDPIVTLCGHLFCWPCLY+WLH HSH Q
Sbjct: 4   GESSTSTSYSDSNNDTNDQGGDFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHSQ 63

Query: 73  ECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEP---NP 132
           ECPVCKA++++ KLVPLYGRGK  TDPRSK  PG+ IPNRP GQRPE A PPP+P   + 
Sbjct: 64  ECPVCKAVVQDDKLVPLYGRGKNQTDPRSKRYPGLRIPNRPTGQRPETAAPPPQPEAASN 123

Query: 133 FPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFP 192
           F + G G MGG+     MA+TRFGNF  S  FGGL+PSLFNFQ HG+ D ++YG+   +P
Sbjct: 124 FFNYGIGLMGGI--MPMMATTRFGNF--SMGFGGLLPSLFNFQFHGFHDATLYGSTPGYP 183

Query: 193 Y-GFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALIW 237
           Y G+ N F G    G          Q D +LK +L F+G CV++ LIW
Sbjct: 184 YGGYHNGFRGVPPRGQERPMARGGNQSDAFLKNILFFVGICVVIFLIW 227

[Close]

BLAST of Clc08G15880 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.7e-38
Identity = 76/133 (57.14%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 26  SDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAIIEEQK 85
           ++ +  ++NF CNICL+LA++PIVTLCGHLFCWPCLYKWLH HS    CPVCKA+++E  
Sbjct: 8   NEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSNHCPVCKALVKEDT 67

Query: 86  LVPLYGRGKTSTDPRSKSIPGINIPNRPAGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFA 145
           LVPLYG GK S+DPRSK   G+ +PNRPA  R E A P  E     H+G  F GG   FA
Sbjct: 68  LVPLYGMGKPSSDPRSKLNSGVTVPNRPAATRTETARPRLEQR---HHGSSFFGGHSSFA 127

Query: 146 PM-ASTRFGNFTL 158
            M    RF NF L
Sbjct: 128 AMPTGLRFSNFLL 137

[Close]

BLAST of Clc08G15880 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-20
Identity = 70/233 (30.04%), Postives = 112/233 (48.07%), Query Frame = 0


Query: 14  ESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHS---- 73
           +S   +P + S   ++ D SNF+CNICLD  Q+P+VTLCGHLFCWPC++KWL + S    
Sbjct: 25  KSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTS 84

Query: 74  ----HPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAG--QRPEAAGP 133
                 ++CPVCK+ +    LVPLYGRG+ +T    K+    ++P RP G   R E    
Sbjct: 85  DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN----SVPKRPVGPVYRLEMPNS 144

Query: 134 PPEPNPFP-HNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMY 193
           P             F     G+ P++     N   S ++  ++  +    +       ++
Sbjct: 145 PYASTDLRLSQRVHFNSPQEGYYPVSGVMSSN---SLSYSAVLDPVM-VMVGEMVATRLF 204

Query: 194 GAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALI 236
           G      + +P+ ++ +   G     ++ Q   D  L R+  F   CV+L L+
Sbjct: 205 GTRVMDRFAYPDTYNLAGTSGPRMRRRIMQA--DKSLGRIFFFFMCCVVLCLL 247

[Close]

BLAST of Clc08G15880 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-20
Identity = 70/233 (30.04%), Postives = 112/233 (48.07%), Query Frame = 0


Query: 14  ESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHS---- 73
           +S   +P + S   ++ D SNF+CNICLD  Q+P+VTLCGHLFCWPC++KWL + S    
Sbjct: 25  KSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTS 84

Query: 74  ----HPQECPVCKAIIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPAG--QRPEAAGP 133
                 ++CPVCK+ +    LVPLYGRG+ +T    K+    ++P RP G   R E    
Sbjct: 85  DEYQRHRQCPVCKSKVSHSTLVPLYGRGRCTTQEEGKN----SVPKRPVGPVYRLEMPNS 144

Query: 134 PPEPNPFP-HNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMY 193
           P             F     G+ P++     N   S ++  ++  +    +       ++
Sbjct: 145 PYASTDLRLSQRVHFNSPQEGYYPVSGVMSSN---SLSYSAVLDPVM-VMVGEMVATRLF 204

Query: 194 GAGANFPYGFPNMFHGSHGHGHGYYHQLRQGQQDYYLKRLLLFIGFCVLLALI 236
           G      + +P+ ++ +   G     ++ Q   D  L R+  F   CV+L L+
Sbjct: 205 GTRVMDRFAYPDTYNLAGTSGPRMRRRIMQA--DKSLGRIFFFFMCCVVLCLL 247

The following BLAST results are available for this feature:

BLAST of Clc08G15880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884023.1	1.3e-133	99.57	E3 ubiquitin ligase rnf-5 [Benincasa hispida]	[more]
KAG6598412.1	5.0e-133	97.02	E3 ubiquitin ligase rnf-5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004152714.1	1.4e-130	97.83	E3 ubiquitin ligase rnf-5 [Cucumis sativus] >XP_011649602.1 E3 ubiquitin ligase ...	[more]
XP_008444676.1	1.8e-130	97.83	PREDICTED: RING finger protein 5 [Cucumis melo] >XP_008444677.1 PREDICTED: RING ...	[more]
XP_023547002.1	3.0e-130	97.39	E3 ubiquitin-protein ligase RNF185-like [Cucurbita pepo subsp. pepo] >XP_0235470...	[more]

BLAST of Clc08G15880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09463	5.7e-31	36.78	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1	[more]
Q5ZIR9	1.9e-26	51.54	E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus OX=9031 GN=RNF185 PE=2 SV=1	[more]
Q96GF1	5.5e-26	50.35	E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1	[more]
Q5RFK9	5.5e-26	50.35	E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii OX=9601 GN=RNF185 PE=2 SV=1	[more]
Q91YT2	1.2e-25	52.42	E3 ubiquitin-protein ligase RNF185 OS=Mus musculus OX=10090 GN=Rnf185 PE=2 SV=1	[more]

BLAST of Clc08G15880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLD2	6.6e-131	97.83	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G360850 P...	[more]
A0A1S3BBQ8	8.6e-131	97.83	RING finger protein 5 OS=Cucumis melo OX=3656 GN=LOC103487942 PE=4 SV=1	[more]
A0A5A7VHN4	8.6e-131	97.83	RING finger protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A6J1GGW7	1.9e-130	96.15	RING finger protein 5 OS=Cucurbita moschata OX=3662 GN=LOC111454080 PE=4 SV=1	[more]
A0A6J1HCN0	3.3e-130	96.96	E3 ubiquitin-protein ligase RNF185-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Clc08G15880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19310.1	4.4e-79	66.82	RING/U-box superfamily protein	[more]
AT2G23780.1	9.2e-69	57.02	RING/U-box superfamily protein	[more]
AT1G74990.1	1.7e-38	57.14	RING/U-box superfamily protein	[more]
AT4G03510.1	2.1e-20	30.04	RING membrane-anchor 1	[more]
AT4G03510.2	2.1e-20	30.04	RING membrane-anchor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 37..77 e-value: 6.4E-8 score: 42.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 37..78 score: 13.256433
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 36..77 e-value: 2.0E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..129
None	No IPR available	PANTHER	PTHR12313:SF39	OS12G0636000 PROTEIN	coord: 9..237
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 35..79 e-value: 6.84447E-30 score: 103.923
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 33..90
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 11..103 e-value: 3.6E-17 score: 64.5
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 9..237
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 52..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G15880.2	Clc08G15880.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity