Clc08G07840 (gene) Watermelon (cordophanus) v2

Overview
NameClc08G07840
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr08: 19396081 .. 19396338 (-)
RNA-Seq ExpressionClc08G07840
SyntenyClc08G07840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATGCAAATAGGCTTTCCACAATTGCTGCCGAAATAGGGCAACTATATAATGAAATTCAGGAGCACCGTGGGTTGTTAAAAACTTATTTGAGGAGTGGGAGAACAAGAGATCTTGTTCGAAAGAAGCGCGCATTCACGCTGTCAGACAACGGGTCGAGGATTTGGAGGGAAGGCAGCAAGCGCTTCAAGCAGAGCAGCAAACACTTATGGTCACCCACAATCTTGAGGAGACTGACAAGTAGAGTTCGTTGA

mRNA sequence

ATGGATGATGCAAATAGGCTTTCCACAATTGCTGCCGAAATAGGGCAACTATATAATGAAATTCAGGAGCACCGTGGGTTGTTAAAAACTTATTTGAGGAGTGGGAGAACAAGAGATCTTGTTCGAAAGAAGCGCGCATTCACGCTGTCAGACAACGGGTCGAGGATTTGGAGGGAAGGCAGCAAGCGCTTCAAGCAGAGCAGCAAACACTTATGGTCACCCACAATCTTGAGGAGACTGACAAGTAGAGTTCGTTGA

Coding sequence (CDS)

ATGGATGATGCAAATAGGCTTTCCACAATTGCTGCCGAAATAGGGCAACTATATAATGAAATTCAGGAGCACCGTGGGTTGTTAAAAACTTATTTGAGGAGTGGGAGAACAAGAGATCTTGTTCGAAAGAAGCGCGCATTCACGCTGTCAGACAACGGGTCGAGGATTTGGAGGGAAGGCAGCAAGCGCTTCAAGCAGAGCAGCAAACACTTATGGTCACCCACAATCTTGAGGAGACTGACAAGTAGAGTTCGTTGA

Protein sequence

MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKKRAFTLSDNGSRIWREGSKRFKQSSKHLWSPTILRRLTSRVR
Homology
BLAST of Clc08G07840 vs. NCBI nr
Match: KZM89910.1 (hypothetical protein DCAR_022727 [Daucus carota subsp. sativus])

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKK 45
          MD ANRLS IAAE+GQL NEIQEHR +L   LRS RT D  RK+
Sbjct: 1  MDAANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKE 44

BLAST of Clc08G07840 vs. NCBI nr
Match: KJB06797.1 (hypothetical protein B456_001G159900 [Gossypium raimondii] >PPD86383.1 hypothetical protein GOBAR_DD16675 [Gossypium barbadense])

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKK 45
          MD ANRLS IAAE+GQL NEIQEHR +L   LRS RT D  RK+
Sbjct: 33 MDAANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKE 76

BLAST of Clc08G07840 vs. NCBI nr
Match: TMW81608.1 (hypothetical protein EJD97_008706 [Solanum chilense])

HSP 1 Score: 55.5 bits (132), Expect = 2.7e-04
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKK 45
          MD ANRLS IAAE+GQL NEIQ+H  +L ++LRS RT D  RK+
Sbjct: 1  MDAANRLSAIAAEMGQLQNEIQQHHRVLNSFLRSVRTMDPARKE 44

BLAST of Clc08G07840 vs. NCBI nr
Match: KAB2012677.1 (hypothetical protein ES319_D09G107000v1 [Gossypium barbadense] >TYG53583.1 hypothetical protein ES288_D09G120900v1 [Gossypium darwinii] >TYH53683.1 hypothetical protein ES332_D09G116800v1 [Gossypium tomentosum])

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-04
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRD 40
          MD  N+LS IAAEIGQL NEIQEHR LLK +LRS RT D
Sbjct: 33 MDVVNKLSAIAAEIGQLQNEIQEHRRLLKFFLRSVRTID 71

BLAST of Clc08G07840 vs. NCBI nr
Match: TYI64786.1 (hypothetical protein E1A91_D09G112400v1 [Gossypium mustelinum])

HSP 1 Score: 55.1 bits (131), Expect = 3.5e-04
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRD 40
          MD  N+LS IAAEIGQL NEIQEHR LLK +LRS RT D
Sbjct: 33 MDVVNKLSAIAAEIGQLQNEIQEHRRLLKFFLRSVRTID 71

BLAST of Clc08G07840 vs. ExPASy TrEMBL
Match: M1AVS3 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.6e-05
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKK 45
          MD ANRLS IAAE+GQL NEIQEHR +L   LRS RT D  RK+
Sbjct: 3  MDTANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKE 46

BLAST of Clc08G07840 vs. ExPASy TrEMBL
Match: A0A161ZTF6 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022727 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-05
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKK 45
          MD ANRLS IAAE+GQL NEIQEHR +L   LRS RT D  RK+
Sbjct: 1  MDAANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKE 44

BLAST of Clc08G07840 vs. ExPASy TrEMBL
Match: A0A0D2LRW8 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G159900 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.9e-05
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKK 45
          MD ANRLS IAAE+GQL NEIQEHR +L   LRS RT D  RK+
Sbjct: 33 MDAANRLSAIAAEMGQLQNEIQEHRRVLNFLLRSVRTMDPARKE 76

BLAST of Clc08G07840 vs. ExPASy TrEMBL
Match: A0A6N2AIP9 (Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_008706 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRDLVRKK 45
          MD ANRLS IAAE+GQL NEIQ+H  +L ++LRS RT D  RK+
Sbjct: 1  MDAANRLSAIAAEMGQLQNEIQQHHRVLNSFLRSVRTMDPARKE 44

BLAST of Clc08G07840 vs. ExPASy TrEMBL
Match: A0A5D2JI17 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D09G116800v1 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.7e-04
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1  MDDANRLSTIAAEIGQLYNEIQEHRGLLKTYLRSGRTRD 40
          MD  N+LS IAAEIGQL NEIQEHR LLK +LRS RT D
Sbjct: 33 MDVVNKLSAIAAEIGQLQNEIQEHRRLLKFFLRSVRTID 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KZM89910.12.0e-0468.18hypothetical protein DCAR_022727 [Daucus carota subsp. sativus][more]
KJB06797.12.0e-0468.18hypothetical protein B456_001G159900 [Gossypium raimondii] >PPD86383.1 hypotheti... [more]
TMW81608.12.7e-0463.64hypothetical protein EJD97_008706 [Solanum chilense][more]
KAB2012677.13.5e-0474.36hypothetical protein ES319_D09G107000v1 [Gossypium barbadense] >TYG53583.1 hypot... [more]
TYI64786.13.5e-0474.36hypothetical protein E1A91_D09G112400v1 [Gossypium mustelinum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M1AVS37.6e-0568.18Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
A0A161ZTF69.9e-0568.18Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022727 ... [more]
A0A0D2LRW89.9e-0568.18Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G159900 PE=4 ... [more]
A0A6N2AIP91.3e-0463.64Uncharacterized protein OS=Solanum chilense OX=4083 GN=EJD97_008706 PE=4 SV=1[more]
A0A5D2JI171.7e-0474.36Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D09G116800v1 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc08G07840.1Clc08G07840.1mRNA