Clc08G01560 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G01560
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr08: 2688636 .. 2690849 (+)
RNA-Seq Expression	Clc08G01560
Synteny	Clc08G01560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATCAAGGATGACCATCCAAATAGTTTGCCTTTTGGAGGACATGGTGAAAAGTTTGGTAGAGTCCACCATGCAGCTGAAGTAGAATCAGAAGACCTTCCAGCAAATAGCCACCGCACACATGCAGACCTAGCCACCCACATCTCCCAGTTGGCCATTGCCGTTAACAGATTGGACACTCAATACAGGATGTTTCCTTCCTAACTGTGCATGATGTTCGTAATGTTGGTGTCATCTCTATAGTTAGATGCTCTGAGATTTCTAAAACTGCTCCAAAATCTACATTAAGCCTGAAAAGTCTGGAATTGAAGAAGATGTAGAAGAAAAATCTAACAGTTCACCCAAAAGACGTGGGGTACACTTCAGTCCACCTCTTGATTTAAATTTTATCACTAATATCCCACGTGCTCCTTTTCCTAGCAGGTTGACTGTTGCATAGGGAGGATCACTCAAGGAGAAGGTGAAACCAGTTCGATCTTCTGAGATTGAGAGCCCTCTTGTAAAGGGCAAAGATGTTTGGGTTGATGTACCGAAGAACGAAGAGTGTGACATCCCAAAGTTTAAAGTAACTTTTAATTTAATTATCTTGAATTATTTGAATGTTAGTTTTAACTTTGAGGTTGAAGATTTAATTATTGGGTTAAGATAATTCAATTTAGATTAAAGGTTAGAGTTTTGAAAATTTGGATTTAGTTCAATTCAAATTCAATTTGTGAAAATTGAATTGAAATTGAGAAATTTAGAAGTTGAATTTAATTTGGAGATTTAGAATTGGAAGAGATTTTGAAATATGGTTAATTTAAGGAGAAGTAGATAAGTGATCGTGGAATTGATATTTAAGTTGGTAGAATTAATTGTTAGGTGATAAATTAAATTAATATAAAGATGAGAGAGATTTGAGTTGATATGATGGAAGAGAAGGATTCAATATATATACACACAAACACACACACAGGTGTTCTCGAAAAGCGTGAACTAAAGAAAAAAAAAAATCAATTTCTCCTTCTTCTTCCTTCAGCCGCTGCCATTACCTTCACTTCAGTTTTCTTTAGCCGCTCGAGCACCAACCACACGCAGCCGCCAGATCCATTAAATCGAAGCTCTGCCGGTCATCGCTCGAGCTCGAGCCACCCTATCAACAGTAGATTGCTGCTGTCGTTCGCATGAAGCTTCAGACCAGCGGGTTGTCGTCGCCATTTCGTTCGTCCGCTGCCAGTCTGCTTATGCCACAGCCCAACCACCCACATCTGGTGCCATCCTTAGTCGTCGTCCACCGCCTCCTCCGTTTCTGTCACTTTGCCATCGGACGTCTAGCCGCTGCCGGTCGGTTTCGCTTCTCAATCTTTCTTTTCAAGATGTTTTGGTTTAGTTTTGGTTAGTTCTTGATTACCCATGAAGTTCTGATTTTGATTCATTGATACCCAAAACAGTTTGGAGTCGTCGTCCACCAACTTCAAAGGGGGTTTGGATAAGTGTTTGGTTTAACGCTTCAAAAATCCATAAAGATTCAATCTTGGTTGCTATAATTTGGGGTTAAAATCCTTAATTGTGATCCATGCTTAGGGTGGAGATTTCAATTGAAGTTTGAAATAGTTTACTTTCGGTAAGCTTTATTTATTTATTTTTATTTTTTATTTTTTTAATTTTTTTTTATTTTACTTTTTGGGTTAATTTTGTGAATTGGAAGTTGGCCAAAGTTGGAATTAATTTTTATTTATTATTTTAGGTCTTGATTTAAGGTCTTGTTTGGCAAGGAGAAGATAAACTTGCTTGAATTTATCTTGGGCTTAATTTGAGAGGTAAGTAATCCTACTACTAGAACCATTATTGGCCAGACAATTTAGATAGTTGATTGATTTGTTTAGTTTGGATGAAATTGAGAAGCCTGATTTGATTAGAACTGTTTTATGCGCATGATGATACTAGCATGTGTTTGATATAATTATGTGTGGAACTTTGAGACGTGTACTATGATTTATGATGTGAGTTTACTATGAGCATGATATATCTAGAGATAAAGGTGACAATTTATCCTCCTAAAACTACTATGTTACTGAAAGCCTACAGGTTTCCTATTATGTTATCGGAAGCCTACGAGTTTCCTACTATGTTCCTGAAAACCGACGGGTTTTCTATTATGTTACCAGGTGTCGATTGGTACCCTAATATGTTTGTGAGCCTTTGGGCCACCAGATGTGTGTTAGGTTGA

mRNA sequence

ATGGGGAAATCAAGGATGACCATCCAAATAGTTTGCCTTTTGGAGGACATGGTGAAAACTGAAGTAGAATCAGAAGACCTTCCAGCAAATAGCCACCGCACACATGCAGACCTAGCCACCCACATCTCCCAGTTGGCCATTGCCCCTGAAAAGTCTGGAATTGAAGAAGATGTAGAAGAAAAATCTAACAGTTCACCCAAAAGACGTGGGGGAGGATCACTCAAGGAGAAGGTGAAACCAGTTCGATCTTCTGAGATTGAGAGCCCTCTTGTAAAGGGCAAAGATGTTTGGGTTGATGTACCGAAGAACGAAGAGTCTCTGCCGGTCATCGCTCGAGCTCGAGCCACCCTATCAACAGTAGATTGCTGCTGTCGTTCGCATGAAGCTTCAGACCAGCGGGTTGTCGTCGCCATTTCGTTCGTCCGCTGCCAGTCTGCTTATGCCACAGCCCAACCACCCACATCTGGTGCCATCCTTAGTCGTCGTCCACCGCCTCCTCCGTTTCTGTCACTTTGCCATCGGACGTCTAGCCGCTGCCGGTTTCCTATTATGTTATCGGAAGCCTACGAGTTTCCTACTATGTTCCTGAAAACCGACGGGTTTTCTATTATGTTACCAGGTGTCGATTGGTACCCTAATATGTTTGTGAGCCTTTGGGCCACCAGATGTGTGTTAGGTTGA

Coding sequence (CDS)

ATGGGGAAATCAAGGATGACCATCCAAATAGTTTGCCTTTTGGAGGACATGGTGAAAACTGAAGTAGAATCAGAAGACCTTCCAGCAAATAGCCACCGCACACATGCAGACCTAGCCACCCACATCTCCCAGTTGGCCATTGCCCCTGAAAAGTCTGGAATTGAAGAAGATGTAGAAGAAAAATCTAACAGTTCACCCAAAAGACGTGGGGGAGGATCACTCAAGGAGAAGGTGAAACCAGTTCGATCTTCTGAGATTGAGAGCCCTCTTGTAAAGGGCAAAGATGTTTGGGTTGATGTACCGAAGAACGAAGAGTCTCTGCCGGTCATCGCTCGAGCTCGAGCCACCCTATCAACAGTAGATTGCTGCTGTCGTTCGCATGAAGCTTCAGACCAGCGGGTTGTCGTCGCCATTTCGTTCGTCCGCTGCCAGTCTGCTTATGCCACAGCCCAACCACCCACATCTGGTGCCATCCTTAGTCGTCGTCCACCGCCTCCTCCGTTTCTGTCACTTTGCCATCGGACGTCTAGCCGCTGCCGGTTTCCTATTATGTTATCGGAAGCCTACGAGTTTCCTACTATGTTCCTGAAAACCGACGGGTTTTCTATTATGTTACCAGGTGTCGATTGGTACCCTAATATGTTTGTGAGCCTTTGGGCCACCAGATGTGTGTTAGGTTGA

Protein sequence

MGKSRMTIQIVCLLEDMVKTEVESEDLPANSHRTHADLATHISQLAIAPEKSGIEEDVEEKSNSSPKRRGGGSLKEKVKPVRSSEIESPLVKGKDVWVDVPKNEESLPVIARARATLSTVDCCCRSHEASDQRVVVAISFVRCQSAYATAQPPTSGAILSRRPPPPPFLSLCHRTSSRCRFPIMLSEAYEFPTMFLKTDGFSIMLPGVDWYPNMFVSLWATRCVLG

Homology

The following BLAST results are available for this feature:

BLAST of Clc08G01560 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G01560 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G01560 vs.


Match Name	E-value	Identity	Description

BLAST of Clc08G01560 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G01560.2	Clc08G01560.2	mRNA