Clc08G00630 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc08G00630
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	regulator of nonsense transcripts UPF3-like
Location	ClcChr08: 1138590 .. 1148969 (-)
RNA-Seq Expression	Clc08G00630
Synteny	Clc08G00630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCACTTGTATGTCAACTACACCAGTCCCAACAATCTACCGCTTGTGCTAAAACTAGTGGAGTGTACAATACAAGGTACAGTACAAGTAAAATACACAATAAACTAGGGTATAACTTTATACCCAGTAACATCCCCCACTTACCCTAGATTAGATGATGCATATCTTGTAGACCTAGACTCTCCAGGTGACCCTAAAAGACGTTAGCGGTGAGAGTCTTTGTAAACGGATCAGCAACATCTGCTCCGAAGCAATCTTCGTGACGATCATGTCTCCTCGTTGCACAATCTCCCATATCAGATGATACTTGCACTCTATATGCTTTCCTCACTTGTGACTTCTAGGCTCCTTGAAATTTGCCACAACACCACTATTATCATAATAAAGGGTGATAGACATTGACATGTTAGGAGCAACTTCCAGGTCTATCAAAAACTTCCTAAACCAAATAACTTCCTTAGCAGCTACATACTCTGCCTCTATGGTAGAGTCAACAATGCAACCTTGCTTTGTGCTACGCTAGACTATAGTCTCTTCGTTAAGAGTGAACACTAATCCTACTGTGAATTTCCTAAAATCTCTATTAGTTTGAAAATCAAAGTTTGTGTATTCTATAAGGATCAAATCCTTAGTATCTCTTTTAGAATGCGAGTTACAAAATCTTTTGAATTCTATAACTTCTAATTAGTTAACTATATTTAATCAATTGTTCATTTTGAAAAAAAGTATCTATCATAATAATTATCTCATACAATTAATACACACTCCCTTATTTAATTTGAACAATTCAAATTTATCCAAGATGTTATAAATTACTTTAATTATCAAGAATTAATTATATATAAAAAAAATTTATAAGTTGAGAATATTTTTTATCCAAACTTTCATAAAAGTAACATTTTGGTTTACAAATTATAATTTATATAATAAAATAAAATTTAGAATGCGTACCTTTTTATTTAATAATTTGCAGACTACCAATTTAAAAGCTTTATCAAAAAAAAAAAAAAAAATTAAGATGAATAAAATTAAGTGGTTAAACACATTCTATCTTTCTTTTATATATATAGAAAATCTTGTAATTTATAATTAATTCATTTTCAAGAATTAATTGTAAATTACTTTCATTTTCGAGATTTTTATAAATTACTTTCAATTTCAATAATTAATTATATATAAAAAAATTTATAAGTTGAAAATCATTTTCTTTATCCCAAATTTTTATAAAAGTAAGGATTTGGCTTACAAATTATAATTTATATAATAAAATAAAATTTAGAATGCATATTTTTTTTATTTAAGATGAATATAGTTAAGCGGTTAAATACATTCTATTTTTTTAATATAGAAAATCTTGTAAAATAGAACATGTTAAAACAAATATTAAAATATAAAATTAATAAAATTGTAATTTTCTTGCAAGTATTAAAATATAAAATTAATAAAATAATTAACTGATAATTCTGTAGAATAGAACATGTTAAAACAAATATAATGATATAACAATATTCCTTTTAGTAAAGAATATTGTTTAATTATAAAAATTTTGTTAATTTAAAAAAAAAAATTATACAAATTACATATTCAATATTTTCTACAAGGCAAAAAAATCAATTTATTGAATTTGAAATTGTGGGATTTACATAGCCAAGTAATATTTGTAACCTAACCCTATCTTGGAGTTAATTACATGCTAAATCATATATAATAATTACACAAAATAAGAATTAGTGGTGTTAATTACATGCTAAATATAACAAAATAAAATCTAAAAACTCTAATTAAATAATATCGAAACAATAACAATGTAACAGCCCAGAATTCAGGTAAATCAATTTCTCTCTTTAAGTTAAAAAAATAATAATAATATTAATAACTAAAGAATTATGCAGGCGGAGTGAGCATTAAGGGGGGTTGGAAATCCTTGGTCATTAGGAGAAATCGAGTTTCAGTTGGGGAAAGATCTCCGGGTGAGTTTGAGTGGCGTTTTTAAGAGAAGGGAGGAAAGGGCAAGAAGGAAAAAAAAGTCAATCTCTCTCTCGATCACCTCTTCGTCATCCATTTTTCGCACAACCCTCCGTCACTCAGTCGCCGTCCTCTCCAACCCTCACTGTCGCCATCATCGCAGCTTTCAGCGTTGCGGCATCATCATAGTCCTCGCGCCACAGCGTTTCGGTCCTCCTCGCGCCGCAGCGTCTCAGTCCTCGTTGCGCCGCAGCATCTCAGTCCTCGTCGCGTCACATCGTCATAGCCCGCATTTCGCTGCATCATCAGTCCTCATTGCCGCATTATCATAATCCTCACGCCGCAGCGTCTCAGCCCTTTCCGCGACGTGTCGTTATAGTTTTCATAGCACATTGCCACAGTGTAGGGAAGTCGCGACTTCGCACAGGCAGTCTCGCTCAGTCTCGCTGTCTCGCTTAGTCTTGCCGCAGTCTCGCTCTTGCAGGTAAGGGACTTACTATCGGGTTTTAGTGACGCCTAATGTCTAATTGTGTTGTTGACTATTGAATGTCGCTGTGAACTTTTTGTCTCAGATGTTGATTGCTATGATTGTTTCGGTATGCCAAGTTTGTAGCTTGTATGTAATGTACTTATGCTTATGTGCCTATGACTCTGCAAATCTCTGCGATGAACTAGCTATGCCATGACATGTTATAGGTTACCCTACTTGTCGTGCCCCGTACCCCTAATGTACTGTGCTACGAAGGGTGTCCCTCGGGATCACCACCTATGTCCATGTTACAAATGTAATCACCGCGTACCCTCGGGTTGCTTCCTATGCTTATGCCTACGCTTATGCCTATGCCGGGTACATGGGTGCACACGACAAAAAAAGGGTAATAGATAGGCCTAGTAGTGGGTCTGTTACTGAATATGATTGCTCACCCTTTTCTATGTTTTTCTCCCAGGTAAGGAGCATGGTGGCCAGGCGCGTGACCGAGGAAATCCGTGATCGTACCATGGGATCGTTGACATTGCTTCCGCACCTTAGCCTGAGGTATCGTGTATTGGACTTGTAGGGTAGTAGTATTTGCATACATTAGACCGTTTGTTATTTGTTTTGATATTGTTATGTTCGGCTTTCTTTTTTTTTGAGGTTTTGCCTAACTATTTAAGGGGTACCCCGCTAAAGCGTTTTTACTCCTCTATGTTTGGTTTAGCAAAATATCAGAAAACCAACCGTTTTAGGAATTTGACCGACTTTATCTATAGTGTGTGATACCGTGTCTCTTAATTTCCAATGCATTCACTGAATGGTTATGCATGACGTAGCGACGTGTTAGTTTTTAAAAGGTCAGGTCGTTACAAACAAAATTATAATATTATCAAATATAACCTCAAACATATTAATTACATGACAATTTATTTTTTCATGATATCAATAGAAATTTAGATTTTTTGTACCCTAAGTTTCACAACAATTTGTCCGTACGAATATTAATTTTTCTCTTGAATAGTCCTCACTCCCACACACAAGCATGTAGCATTTCGTTCTCTGAAGATACTTGATGATGATTTTAACTGTGGTCTAGTGATCTAATCTTGGATTAGACTGATATCTACTAACCATGAGAGAGGATGTATTAAAAAGTTAAATTAAATTAGGTTAGAAATGTAGTTTTGAAAGGTAATTAAAGTTTAAAATATTGGAAGTAGGTGAATTTCCTAAAATCTTTTAAAAGAAAAGAAAAAAGGTTTGGGCCTTTAGTTGGGGCGAAGGGGTATTTATAGTGGGCCTGATAAGAGTGGAAGGAGCCCGAAAGAGTTTGGCGAGCATTCGGTCGTTTCATCTTCTCCGAACTCTCGTCGTCAGCGTTAGTAACCCCAATTCCCAAACTTCCCAAAAATATATTCTCCTTGACTTGTTTGAGAAATTAGAAAAACCAAAAGCTTGAAGGGAATTCTCAATTGTTTTGGTTTGTGTTCGCAGTGCGGGGGTTTTCCAGATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGGTTCCACCCTTTTTTCTCTTTTTCTTCTCTATTCACCACAAATTACTCTTCCCAACTGGGTTTTCAGTTTTGTCTTGTTATTATCTCGTTTTGTATTTTCAGAAATCTGGATGTTCAATAAGGCTTTTTGCGAACTGGGTATTTCTCGTATTGTGCGTTTGTGTGCTTTTATGCTCTTTCTTTTCCCCTACGTGGGTTATTGGGGGGTTGGTGTGATTGGAATGAATGCTGTAGGACACCCCTCCAATTTCATGCCCAATTGTTGTGTATGATTGTCATCTCCGGAAACTAAATCAAGCAATCCTTCTAGACTTTGTGTTTTTCTGCTTACAATCGCCTCAGTTGTATGCTTCCTGTTTTTTCTTTTCTCTTGGTTTCTATGGACTACAGTTCACAATATGAATACTGAAGGTTTCTTACTCATTCAGAGGTTTCTTCTGAAATAATTTTGCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTCGATGGCCATGTTTTCGTTAATGAGAAGGGTAAAGCCGAAAGCTTTTTCCTTTTTCCTTTTATTGAACTTATCAGTAGCTTCTTGTTTCGCTGGGTTTGGTGGGTGGTTCACTTGCTCTCAACCCGTTTCTGAGAAGTGGGAGATAACGATTTTATGAATGAGACCAATGCTTAATACAGATTACTCCCCTTCATGTTTTCTGATGTGCATTTTTCAATTAACTACATATCATCTTCGAGATTGTGAAAATGTTTAATGTTAGGATCATGTTTCGTTCCACATGTTTAGAGTCTCGATTGAAGTTAACTTATTCTAGTCAAATGATTATAGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGGTAATGATCAGTTTGTGAGAAGATGGAATAAGTGGTTGTTCTTGTTTTGTATTCCTTATTGTGTTGTGTAATTATCTTTCCTCAATGAAAGCAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTTTGTTACTATGTTCACTGACTGGCTTCTTGACATTACTTGCATTCGTGAAGTCATTGGAAGAACGCCAAATATGTTTATGACTTAAAATTGAGTGCCAAAAAGTTGCTGAATAGTCATTCTATAAATTTGCTATTAACTGCCATAGAGATACCATTTACTCCAAATTTGGATAATTCTATAAGTTTTATGTCTCTACTTTTGTTTGCAGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGTGAGATTGTTGTATTCTCTTAATACATGTAACTATGTGCTAATATTTTAAAAATTCTGAGAAAGTGAAGCTACTTGTTTACTAAAATGAGGTTGGAACCAGTTGATTTTTCATTATTTTGACTACTTCACAAGGTATTGGTTCTGTCCATTTAGAGATTAATATTAATGCATTTACTTTAACATTAAGGTGACATTCCTTCGTTTGAATTTATCTGCTGCTTGTGTAATGTTTCAGTATCTTTTCCTTCCATATCGGTTAATTCCATGCATTATAGAATCCAGCTCGTAGGATGGTTTTCTATGTGGTCTTGAAGATTTTTATTCCTCTTCTAATTTCGTACATACTAAATTTCTTGTTATCTCATGCTAAGTTTTTTGGTTCAATAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTTACTTTCAATGTCTTTTTTCTCACGTTTAGAAAATCCAAAGTCTTAGTTTGTTACTTGCTAGTGTCTTTACTATTTTCCCCCTATTGTTTTTGGGACAATAAGCTTTATTGGCTCGTCTTAGATTAGGTCTAAGGATGGTGAACGTGAAGCAGAATGTTTTTAACTTACAAAATGAAGAAAAATGCCTTAAGGATAATTACAAAAGTCCTTAATTACACATGCCTAAAGCGAGGCATTAAACTAGCCAAGGACCCAATCTCCTCCCATGACCTCCCAAAACCCTTAGGAGCCGTTTGGCCCACCAACTTTTTAAGTTAGTGTTAAACAACAATAGTAAAACACTATTGAAGTTTGCACATTTATTGAGAAACTCAATCTTACAACTCTATACCTCAAATACAAGCTTCCTAATTCCAGACTTGTTAACTCCACTCCGTTGGCCAAACACACCCTTCAAGATTTTCCCATTACTCTAGTCAAATATTCCATAAAAAAATCTAGTGAAATATTTTATAATGTTGATCATAGAAGACCACAATCTCTATTACAAACTAAACAAACTCTAAAGGCCTCAACAAAAGTTGGAAATCAAGGTATCCAACTGTCATCTCTTGAGGATGCGATCGAAATCCTCACATGCTCCCCTGATATGAATGCATCAGTACAGCCCGGGCACAAAGGAAGATTGCCTCTTGTATATAATCAGTAGTGTTAACTCCTAATGCAACTATGCAAGTACTTCCTCCTAGTCCTGCCACTCTAAAAACTTGACATTCTTGGAAGTTTTTTCCTTCATTGTGAGGTGAAGTTGAAAGTAATGAAGGCGAGTGATGACTCTGAAGAAACCTTCCTAAAGTTTCCAACTTCTTAGTGGGGATAGTATGTGTTCGTCTAAGTTTTTATTGACTGTGGTATAAACTGTATCATATGAGACCGCCTCAAGATCATGAACCGTGGATGTTGGAATTGAGGCTTTAGTTTTTTGCCCCCTAGATTTCATATGTACTTCTTGGCTATCCTTTCTTGTGAACAATTTGTGTCTTCTATATTTTTTGTCTGAAGATTTTGTGTTGTACATTCAGTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTGGGTACAGGTATGTCTATTTATCTGTCTATGTGGTCAGCAACATCATTTAAATTGTCATTTTGTTTTGTTCTAAGTTTTGATCTGGTATTTTATTGTTAGACTGTTGAGAATGAGTCTGATTTAAACTCTCTTAGCAATTCAGTGTTACTAGTCATTGAGGAGCAGGGGAACCTTAGCCGATTTGACTTGAGATCTGAACACTTTATGCCCTACTCCGCTGCCTACTTGCAATTTTTAAATAATTTTTTCCAATGCATGCTTTTCATGATGGGACTTAATTTTTTTCCTTTTTCTTTTTGGAAGAGTTCGCTTAAGTCTTATGTTTCTCCCATTTCAAATTATCCTGAGCCCTGTATTAACGTTTTTGAAAATTTCATTTTTCTCTTTATTAATAATTATCTTCTTGATTCTTTCTGGGAGTTTGCCATATTATGATGTGCAGATTGCAGGATTGTAATATTTGGACCTGCATTTTAACATAGGCATTATTAACTTACCTTAAACACTTGGGAAGTGATATATTTGAGAGATGGGAGGGGGCACCTTTGCTCTGTTTTATCAAAATATGTTTATCAGGAAAAGGAAAAATGAAAAAAAAGAAAAAAGAAAAAAGAACAAGGTCGTCCAGTAGATAGTGCATGTTGCCTGAATTTCTGAATTATGTTCTTTCGCTGCACTGGGCTTGCTACACACTTATTTCTTTTAATTTATCAATATGTTCTACATGTTTATAATGAACTTGCAGTCTAGAATTTGAAGGCTCTGTTTCATATGTATCTGTAACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTTATGTAAGTTTCTTTTGTTCTCTCGACTAACTATGCAATTACAACTTTCGTTACCCTCTTTCTTTAGAATTATTAACTTCTGTGAATGATCTCCACTCCCACTCATGGCTAATTCTGGGAGGGCACAATTTCCATTCTGTTGCATCGAATTTTAGCACTTGTAAATTTCATGGATAATGATACCTTTACAGGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAACGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAATCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGGTACTACTATTATAATCCTTGCTTATATTTTAGGGACTACTAGCTTATTTGTACAATCTTATTATTGAAGTATCGGACCCTGATCATTGTGTTAAATCATCCTGCTTGATGGATGAGCTGAATAATTTATACTGCTACATTATGTTTCACAAATGAAATTTACCCTATGTATCTTTATGCACTTACAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTGTACTTTCTCACAAACTTTTCTTGCGTTGTCCACCTATTTTAGGAAATTTTACAAGTACTTTCTACTCTTAGTTAATCTAAAACGTGTTGTGTTCTTTTTAGGTTCTGTAAGGCATGCTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGGTTCGTTTATGCATCCAAACTAGTGACTGTCTCTCTCGTGTTACATGATTGCTTTTTTTTTTTTTTTTCTCAAAAACTCATTTTCTTTGATGCCTGTGCAGAAACAAGTATGGGTTCAGAAGTCATCTTCAGGTTCTTAGCATATTTAAATCATGTGAGTCCTTTTACAAATTATCAATGTTTTACCTCCTTTAAGATAGAAGAGCAATACTATCTTTTAAGAGGGTTTCGTCTCTTTCAACTGAATGACTAAGGAGGTCAAAATTATCTAACGATTCTTGTTGGAAGTAAATATAGCACATGTTAAAATCCGTTGTGCTAACATTTGTCAATATATAATTTGGCATGCAACTCATGATAGTTTCGTTCCTCTTAGCACTCTTGGCATTCTTAGCAGTTGATAATTTGGCATGTAAATCAGCTTGTTTGTTGTTTATGGGAATGCCCTCGTGTATGTTTTAGTTGCTATGAAGTTGGCTATTTTATTATTTTTATTTAGAAAATAGGAAACAAAATATTTGATGGATGTGAATTTGTGACGGAATATTTATGAGAAAGAGGGAAACCCCAAGTTAATGAAAATTACATTAAGACATAACCAAAAGATATCATATACCAATTAAATGATGTGTGCATTTACATTAAGACATAACATGGACAGACACAGACAAGGTTAAAAGATTTATCAGAAGGGGCGAGCTTATTATTGTATGTCTGGCTATGAAGGTTATTACTTATCATTACTATCATATTATTTGGCTGAAAGATGTACTGCTCTACTGCTATAACATTCAGGCCGCATAAGCTATCATTGGGACTGTCATCATAGGGGTTCCAAAATGTGAACTGTAATGGAGTTAATAAATGACAGCTTCAATGAAATTCCTGACTGCTGCCATGCATTCTCCTTGAATTCAGCATATATTTTCTGCTGTAGTCGTACTTTTACTGGTTATTGGCTGGATATTGTTATTTGTTTGTCTTAGGTCTTTTCATTTATTATATAGATAAGGACATGTATTGTTTTCCATTAGATCATGACGATGTGTATGTTATCCAACAGATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGA

mRNA sequence

ATGATTCACTTGTATGTCAACTACACCAGTCCCAACAATCTACCGCTTGTGCTAAAACTAGTGGAGTGTACAATACAAGGAGAAATCGAGTTTCAGTTGGGGAAAGATCTCCGGGTGAGTTTGAGTGGCGTTTTTAAGAGAAGGGAGGAAAGGGCAAGAAGGAAAAAAAAGTCAATCTCTCTCTCGATCACCTCTTCGTCATCCATTTTTCGCACAACCCTCCGTCACTCAGTCGCCGTCCTCTCCAACCCTCACTGTCGCCATCATCGCAGCTTTCAGCGTTGCGGCATCATCATAGTCCTCGCGCCACAGCGTTTCGGTCCTCCTCGCGCCGCAGCGTCTCAGTCCTCGTTGCGCCGCAGCATCTCAGTCCTCGTCGCGTCACATCGTCATAGCCCGCATTTCGCTGCATCATCAGGAAGTCGCGACTTCGCACAGGCAGTCTCGCTCAGTCTCGCTGTCTCGCTTAGTCTTGCCGCAGTCTCGCTCTTGCAGATGTTGATTGCTATGATTGTTTCGGTATGCCAAGTTTGTAGCTTGTATGTAATGGTGTCCCTCGGGATCACCACCTATGTCCATGTTACAAATGTAATCACCGCGTACCCTCGGGTTGCTTCCTATGCTTATGCCTACGCTTATGCCTATGCCGGGTACATGGGTGCACACGACAAAAAAAGGGTAATAGATAGGCCTAGTAGTGGGTCTGTTACTGAATATGATTGCTCACCCTTTTCTATGTTTTTCTCCCAGGTAAGGAGCATGGTGGCCAGGCGCGTGACCGAGGAAATCCGTGATCGTACCATGGGATCGTTGACATTGCTTCCGCACCTTAGCCTGAGAGTTTGGCGAGCATTCGGTCGTTTCATCTTCTCCGAACTCTCGTCGTCAGCTGCGGGGGTTTTCCAGATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTCGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTTACTTTCAATGTCTTTTTTCTCACTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTGGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTTATGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAACGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAATCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTCTGTAAGGCATGCTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGAAACAAGTTCTTAGCATATTTAAATCATATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGA

Coding sequence (CDS)

ATGATTCACTTGTATGTCAACTACACCAGTCCCAACAATCTACCGCTTGTGCTAAAACTAGTGGAGTGTACAATACAAGGAGAAATCGAGTTTCAGTTGGGGAAAGATCTCCGGGTGAGTTTGAGTGGCGTTTTTAAGAGAAGGGAGGAAAGGGCAAGAAGGAAAAAAAAGTCAATCTCTCTCTCGATCACCTCTTCGTCATCCATTTTTCGCACAACCCTCCGTCACTCAGTCGCCGTCCTCTCCAACCCTCACTGTCGCCATCATCGCAGCTTTCAGCGTTGCGGCATCATCATAGTCCTCGCGCCACAGCGTTTCGGTCCTCCTCGCGCCGCAGCGTCTCAGTCCTCGTTGCGCCGCAGCATCTCAGTCCTCGTCGCGTCACATCGTCATAGCCCGCATTTCGCTGCATCATCAGGAAGTCGCGACTTCGCACAGGCAGTCTCGCTCAGTCTCGCTGTCTCGCTTAGTCTTGCCGCAGTCTCGCTCTTGCAGATGTTGATTGCTATGATTGTTTCGGTATGCCAAGTTTGTAGCTTGTATGTAATGGTGTCCCTCGGGATCACCACCTATGTCCATGTTACAAATGTAATCACCGCGTACCCTCGGGTTGCTTCCTATGCTTATGCCTACGCTTATGCCTATGCCGGGTACATGGGTGCACACGACAAAAAAAGGGTAATAGATAGGCCTAGTAGTGGGTCTGTTACTGAATATGATTGCTCACCCTTTTCTATGTTTTTCTCCCAGGTAAGGAGCATGGTGGCCAGGCGCGTGACCGAGGAAATCCGTGATCGTACCATGGGATCGTTGACATTGCTTCCGCACCTTAGCCTGAGAGTTTGGCGAGCATTCGGTCGTTTCATCTTCTCCGAACTCTCGTCGTCAGCTGCGGGGGTTTTCCAGATGAAGGACCCGTTGGAGAGAACCAAAGTAGTGATTAGGCACTTGCCCCCTTCTCTTCCTCACTCAGATCTCTTCCACCATATTCATGATCGATTCGCTGGTCGCTTCAATTGGTCTTACTATCGTCCCGGAAAGACCAGTCAGAAGGACCAGAGATACGCTCGAGCCTACATAGACTTTACCAAACCTGAAGATGTTTTTGAGTTTGCGGAGTTCTTCGATGGCCATGTTTTCGTTAATGAGAAGGGTGCTCAGTATAAGGCTGTAGTTGAATATGCACCTTCTCAACGTGTTCCCAGATCATCTACCAAAAAGGATGGCCGTGAGGGGACAATATACAAAGATCCAGATTATTTGGAGTTTCTCAAACTTATTGCAAAGCCTGCTGAGCATCTTCCAAGTGCTGAAATACAGTTGGAAAGGAAAGAAGCAGAGCAATCTGGTGCTGCAAAAGAAACTCCAATTGTTACCCCTCTCATGGAGTTTGTTCGCCAGAAACGAGCAGTTGAAAGCGGAACACAGGGATCTTCAGTACCTCGGAAGGTCAAAAGAGGTGGGGCAGCATCCTCTAGAAAGCCTGAGTCGAATTCCATGAAGCGAGGGATGGAGAAGAAGAAGGCATGTTACTTTCAATGTCTTTTTTCTCACTATATTTTAAAGGACAGTGTGAAGAACACAAACCGCAGAGACAAGTCAAATTTCATTTTGGTCCCCAGGCGAGAGGATCAGTCAGCTACTTCAAGTGGGATTGGAGTTTCGGATGTGGGTACAGCTGACTTTGGAAAGAAAAAAATTCTGCTTCTCAAGGGGAAAGAGCGAGATATATCTTATGTTTCTGATGGCATGTTACAGTTGCAGAGTGCTACATCTTCTGGGAATTCTCCTGCAAGTGCATCAAAACATAATCAGAGGCGTGAGGCTGGTGGAAGCATGATCAGAAGCATCCTTTTAAATAATGAAGCACGCCATGGGCAGAGTTCATCAGTGGCTCAGTCTCATCAAAAAATTCAGATCCTGAACTCAGACAATGGGAAGCGACCACCTCGTCCCATTAACGCTCGATCTGGGTCCAATGATATGTCCAGTAATGAACCAAATCCATCTGGTTCAGAAGGGGATGGAAAAAGGGCTCCAGACAGTAAGTTTAGTAAAAAGGAACTTCATGGCCTGGGTAGTGCTAGTGAGAAGCAAGAAAAACGAATAAGAAACAAAGATAGACCTGATCGTGGGGTCTGGGCACCACGCAATCGTTCAGATGCATCAGTCTCACAACTTGAGGAATCCTCTGTTTCACAATCTAGTCATTTGCTTTCTGACTCGGTTGAAGCATACCGTGGGGAAATGAAAGAAGATATTCATGGAAGCAGGGCTGGGGATGTTACAACAACAATGAGTGGGCGTAACAGTTCAGTGGAGAATGGTTCTGTAAGGCATGCTGGACGTCGTGGGGCTGGCCATGTTATGAAGGATGATGGGTCTTTGAACCCAAATGAAGGGAAGCCATCCAAAAGAGGTGTTGCTGGTGGTCACGAGAAACAAGTTCTTAGCATATTTAAATCATATAATGGCATCCAGACAGGACTATGGTTCCTCAAACTTCCAGGGGAATTATCTCCATTCTGA

Protein sequence

MIHLYVNYTSPNNLPLVLKLVECTIQGEIEFQLGKDLRVSLSGVFKRREERARRKKKSISLSITSSSSIFRTTLRHSVAVLSNPHCRHHRSFQRCGIIIVLAPQRFGPPRAAASQSSLRRSISVLVASHRHSPHFAASSGSRDFAQAVSLSLAVSLSLAAVSLLQMLIAMIVSVCQVCSLYVMVSLGITTYVHVTNVITAYPRVASYAYAYAYAYAGYMGAHDKKRVIDRPSSGSVTEYDCSPFSMFFSQVRSMVARRVTEEIRDRTMGSLTLLPHLSLRVWRAFGRFIFSELSSSAAGVFQMKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQVLSIFKSYNGIQTGLWFLKLPGELSPF

Homology

[Close]

BLAST of Clc08G00630 vs. NCBI nr
Match: XP_008459659.1 (PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo])

HSP 1 Score: 925.6 bits (2391), Expect = 3.0e-265
Identity = 485/514 (94.36%), Postives = 494/514 (96.11%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPESNSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           +DQSA SSGIG+SDVG ADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASASK
Sbjct: 241 DDQSANSSGIGISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSND+
Sbjct: 301 HNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDI 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +SGRNSSVENGSVRH G
Sbjct: 421 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 504

[Close]

BLAST of Clc08G00630 vs. NCBI nr
Match: XP_011656113.1 (regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus])

HSP 1 Score: 922.5 bits (2383), Expect = 2.5e-264
Identity = 484/514 (94.16%), Postives = 493/514 (95.91%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPESNSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           EDQSATSS IG+SDVGTADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASASK
Sbjct: 241 EDQSATSSAIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HN RREAGG +IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSND+
Sbjct: 301 HNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDI 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRA D+KFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSV QSSHLLSDSVEA+RGEMKEDIHGSR GDVTT +SGRNSSVENGSVRH G
Sbjct: 421 SVSQLEESSVPQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 504

[Close]

BLAST of Clc08G00630 vs. NCBI nr
Match: XP_038890175.1 (regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida] >XP_038890176.1 regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida])

HSP 1 Score: 921.4 bits (2380), Expect = 5.7e-264
Identity = 482/514 (93.77%), Postives = 491/514 (95.53%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRF GRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFGGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGH+FVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHIFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKE PIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKEAPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPE NSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPELNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           EDQSATSSGIG+SDV TADFGKKKILLLKGKERDIS+VSDGMLQLQSATSS  SPASASK
Sbjct: 241 EDQSATSSGIGISDVVTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSETSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HNQRREA GSMIRSILLNNEARHGQ+SSVAQSH KIQILNSDNGKRPPRPINARSGSNDM
Sbjct: 301 HNQRREASGSMIRSILLNNEARHGQNSSVAQSHPKIQILNSDNGKRPPRPINARSGSNDM 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRAPD KFSKKELHGLGS +EKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRAPDGKFSKKELHGLGSGNEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSVSQSSHLLSDSVEAYRGEMKED+HGSR GDVTTT+SGRNSSVENGSVRH G
Sbjct: 421 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDVHGSRTGDVTTTVSGRNSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGA HVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAAHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 504

[Close]

BLAST of Clc08G00630 vs. NCBI nr
Match: XP_038890177.1 (regulator of nonsense transcripts UPF3 isoform X2 [Benincasa hispida])

HSP 1 Score: 913.3 bits (2359), Expect = 1.5e-261
Identity = 480/514 (93.39%), Postives = 489/514 (95.14%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRF GRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFGGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGH+FVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHIFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKE PIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKEAPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPE NSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPELNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           EDQSATSSGIG+SDV TADFGKKKILLLKGKERDIS+VSDGMLQLQSATSS  SPASASK
Sbjct: 241 EDQSATSSGIGISDVVTADFGKKKILLLKGKERDISHVSDGMLQLQSATSSETSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HNQRREA GSMIRSILLNNEARHGQ+SSVAQSH KIQILNSDNGKRPPRPINARSGSNDM
Sbjct: 301 HNQRREASGSMIRSILLNNEARHGQNSSVAQSHPKIQILNSDNGKRPPRPINARSGSNDM 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRAPD KFSKKELHGLGS +EKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRAPDGKFSKKELHGLGSGNEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSVSQSSHLLSDSVEAYRGEMKED+HGSR GDVTTT+SGRNSSVEN  VRH G
Sbjct: 421 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDVHGSRTGDVTTTVSGRNSSVEN--VRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGA HVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAAHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 502

[Close]

BLAST of Clc08G00630 vs. NCBI nr
Match: XP_008459660.1 (PREDICTED: regulator of nonsense transcripts UPF3 isoform X2 [Cucumis melo])

HSP 1 Score: 908.7 bits (2347), Expect = 3.8e-260
Identity = 479/514 (93.19%), Postives = 488/514 (94.94%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPESNSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           +DQSA SSGIG+SDVG ADFGKKKILLLKGKERDIS+       LQSATSSGNSPASASK
Sbjct: 241 DDQSANSSGIGISDVGAADFGKKKILLLKGKERDISH-------LQSATSSGNSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSND+
Sbjct: 301 HNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDI 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +SGRNSSVENGSVRH G
Sbjct: 421 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 497

[Close]

BLAST of Clc08G00630 vs. ExPASy Swiss-Prot
Match: Q9FVW4 (Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 PE=1 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.1e-103
Identity = 243/532 (45.68%), Postives = 322/532 (60.53%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVP 482
           FLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 483 RKVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPR 542
           R  +R    S+ KP     KR  EKKK          Y+ K+S KN  R+  ++ +   +
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKK----------YVEKESSKNVPRKTTAD-VSSSK 240

Query: 543 REDQSATSSG-----------IGVSDVG---TADFGKKKILLLKGKERDISYVSDGMLQL 602
            + + + SSG           I  S  G   T D GKKKILLL+ K+RD         + 
Sbjct: 241 PDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQ 300

Query: 603 QSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGK 662
              T+   + ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N K
Sbjct: 301 HIDTNLSRN-STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYK 360

Query: 663 RPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKD 722
           RP RP N R+G                            K+ H  G+ SEKQE+R RNKD
Sbjct: 361 RPSRPANTRAG----------------------------KDYHTSGTISEKQERRTRNKD 420

Query: 723 RPDRGVWAPRNRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMS 782
           RPDR +WAPR   D S    E+  +S + +          GE+K+ +   R+G+V  +  
Sbjct: 421 RPDRVMWAPRR--DGS----EDQPLSSAGN---------NGEVKDRMFSQRSGEVVNSSG 473

Query: 783 GRNSSVENGSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQV 817
           G   ++ENGS RH+ RR  G   K++  +   EGK S+RG  GG   HEKQ+
Sbjct: 481 GH--TLENGSARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQM 473

[Close]

BLAST of Clc08G00630 vs. ExPASy Swiss-Prot
Match: B0S733 (Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-19
Identity = 71/208 (34.13%), Postives = 109/208 (52.40%), Query Frame = 0


Query: 310 TKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTKPEDVF 369
           +KVVIR LPPSL    L  H+       F++  + P   S     ++RAYI+F  PED+ 
Sbjct: 43  SKVVIRRLPPSLSKDQLQEHLSP--LPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDII 102

Query: 370 EFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKDGREGTIYKDPDYLEFL---- 429
            F + FDG+VF++ KG +Y AVVE+AP Q+V +    KKD + GTI +DP+Y  FL    
Sbjct: 103 IFRDRFDGYVFIDNKGQEYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYS 162

Query: 430 ----KLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSV 489
               K +A P   L   EI+ + +E      AK T   TPL+E+++ K+  +   +    
Sbjct: 163 CDEEKSMANPETLL--GEIEAKTREL----IAKRT---TPLLEYIKNKKLEKQRIREEKR 222

Query: 490 PRKVKRGGAASSRKPESNSMKRGMEKKK 509
             + +R      ++ E    +R  E++K
Sbjct: 223 EERRRRELEKKRQREEEKRKRREEERQK 239

[Close]

BLAST of Clc08G00630 vs. ExPASy Swiss-Prot
Match: Q9BZI7 (Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.8e-16
Identity = 119/447 (26.62%), Postives = 184/447 (41.16%), Query Frame = 0


Query: 310 TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTK 369
           +KVVIR LPP+L    L  H+     HD F        +    TS     YARAYI+F  
Sbjct: 51  SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFE-------FFSNDTSLYPHMYARAYINFKN 110

Query: 370 PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKK-DGREGTIYKDPDYLEF 429
            ED+  F + FDG+VF++ KG +Y A+VE+AP Q+  +  TKK D + GTI  DP+Y +F
Sbjct: 111 QEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKF 170

Query: 430 LKLIAKPAEHLPSA-EIQLERKEAEQSG--AAKETPIVTPLMEFVRQKRAVESGTQGSSV 489
           L+  A   E + S  E  LE  EA+     A K TP+++ L    R +       +   +
Sbjct: 171 LESYATDNEKMTSTPETLLEEIEAKNRELIAKKTTPLLSFLKNKQRMREEKREERRRREI 230

Query: 490 PRKVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRR------DKS 549
            RK +R       K E    ++ +EK K      +     LKD  K    R      ++ 
Sbjct: 231 ERKRQREEERRKWKEEEKRKRKDIEKLKK--IDRIPERDKLKDEPKIKVHRFLLQAVNQK 290

Query: 550 NFILVPRREDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSG 609
           N +  P + D+               +  K++    K K+ D   +SD     QS T   
Sbjct: 291 NLLKKPEKGDEK--------------ELDKRE----KAKKLDKENLSDERASGQSCTLPK 350

Query: 610 NSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPIN 669
            S +       +R    S  R               + +  ++++    +  ++  R   
Sbjct: 351 RSDSELKDEKPKRPEDESG-RDYREREREYERDQERILRERERLKRQEEERRRQKERYEK 410

Query: 670 ARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEK-----RIRNKDRP 729
            ++        +      E D  R    K    E  G    +EK+E+     RIRNKDRP
Sbjct: 411 EKT-----FKRKEEEMKKEKDTLRDKGKKAESTESIGSSEKTEKKEEVVKRDRIRNKDRP 464

Query: 730 DRGVWAPRNRSDASVSQLEESSVSQSS 737
              ++ P  RS   +   ++S+ S  S
Sbjct: 471 AMQLYQPGARSRNRLCPPDDSTKSGDS 464

[Close]

BLAST of Clc08G00630 vs. ExPASy Swiss-Prot
Match: Q9H1J1 (Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-14
Identity = 61/205 (29.76%), Postives = 97/205 (47.32%), Query Frame = 0


Query: 310 TKVVIRHLPPSLPHSDLFHHI-----HDRFAGRFNWSYYRPGKTSQKDQRYARAYIDFTK 369
           +KVVIR LPP L    L   +     HD F        +     S     Y+RAYI+F  
Sbjct: 68  SKVVIRRLPPGLTKEQLEEQLRPLPAHDYFE-------FFAADLSLYPHLYSRAYINFRN 127

Query: 370 PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS-TKKDGREGTIYKDPDYLEF 429
           P+D+  F + FDG++F++ KG +Y AVVE+AP Q++ +    KKD + G+I  DP+Y +F
Sbjct: 128 PDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKF 187

Query: 430 LKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPRK 489
           L+      E   SA  +    E E           TPL+E+++ ++  +   +      +
Sbjct: 188 LETYC-VEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREER 247

Query: 490 VKRGGAASSRKPESNSMKRGMEKKK 509
            +R       + E    +R  E+ K
Sbjct: 248 RRRELEKKRLREEEKRRRREEERCK 264

[Close]

BLAST of Clc08G00630 vs. ExPASy Swiss-Prot
Match: Q10267 (Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=upf3 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.5e-13
Identity = 67/267 (25.09%), Postives = 118/267 (44.19%), Query Frame = 0


Query: 311 KVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTS--QKDQRYARAYIDFTKPEDV 370
           KV++ +LPP+LP       I+  F     W  +  GK +   + +  + AY+ F     V
Sbjct: 13  KVLVFNLPPTLPEQVFLQSINS-FLPHVEWHRFSKGKATVGTRSELLSFAYLKFQSATAV 72

Query: 371 FEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLEFLKLIA 430
            EF   + GH F+++K   Y+A+V  AP Q++P S  K D  EG++ +DP + EF     
Sbjct: 73  QEFFRVYQGHTFIDKKNNTYRAIVTIAPYQKIPPSKVKADSLEGSLEQDPKFQEF----- 132

Query: 431 KPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKR--AVESGTQGSSVPRKVKR 490
                    + +   + A      ++    TPL++++ +K+   VE G    S      +
Sbjct: 133 -------KVQRESYSQTASNDDVIEKLQTSTPLLQYLAEKKNAVVEKGKSKPSKKSVKAK 192

Query: 491 GGAASSRKPESNSMKRG---MEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRRE 550
                + KP SN+ K G    E KK+       +  ++K+   +  ++ K      P   
Sbjct: 193 KKLRLAEKPASNNSKAGKSSQESKKSSKAPAESAAAVIKEDKVSDRKKSKKKPKKTP-VS 252

Query: 551 DQSATSSGIGVSDVGTAD---FGKKKI 568
           + +A+ +    SD  T +    GK+KI
Sbjct: 253 NSTASQASENASDKKTKEKKSSGKQKI 265

[Close]

BLAST of Clc08G00630 vs. ExPASy TrEMBL
Match: A0A1S3CB69 (regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 925.6 bits (2391), Expect = 1.5e-265
Identity = 485/514 (94.36%), Postives = 494/514 (96.11%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPESNSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           +DQSA SSGIG+SDVG ADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASASK
Sbjct: 241 DDQSANSSGIGISDVGAADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSND+
Sbjct: 301 HNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDI 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +SGRNSSVENGSVRH G
Sbjct: 421 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 504

[Close]

BLAST of Clc08G00630 vs. ExPASy TrEMBL
Match: A0A0A0KSY5 (Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 PE=3 SV=1)

HSP 1 Score: 922.5 bits (2383), Expect = 1.2e-264
Identity = 484/514 (94.16%), Postives = 493/514 (95.91%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPESNSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           EDQSATSS IG+SDVGTADFGKKKILLLKGKERDIS+VSD MLQLQSATSSGNSPASASK
Sbjct: 241 EDQSATSSAIGISDVGTADFGKKKILLLKGKERDISHVSDDMLQLQSATSSGNSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HN RREAGG +IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSND+
Sbjct: 301 HNHRREAGGGVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDI 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRA D+KFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRASDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSV QSSHLLSDSVEA+RGEMKEDIHGSR GDVTT +SGRNSSVENGSVRH G
Sbjct: 421 SVSQLEESSVPQSSHLLSDSVEAFRGEMKEDIHGSRTGDVTTIVSGRNSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 504

[Close]

BLAST of Clc08G00630 vs. ExPASy TrEMBL
Match: A0A1S3CBX5 (regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498712 PE=3 SV=1)

HSP 1 Score: 908.7 bits (2347), Expect = 1.8e-260
Identity = 479/514 (93.19%), Postives = 488/514 (94.94%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSL HSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLSHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGGAASSRKPESNSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGAASSRKPESNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           +DQSA SSGIG+SDVG ADFGKKKILLLKGKERDIS+       LQSATSSGNSPASASK
Sbjct: 241 DDQSANSSGIGISDVGAADFGKKKILLLKGKERDISH-------LQSATSSGNSPASASK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
           HN RREAGGS+IRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRP NARSGSND+
Sbjct: 301 HNHRREAGGSVIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPTNARSGSNDI 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSNEPNPSGSEGDGKRAPD+KFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SSNEPNPSGSEGDGKRAPDNKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSR  DVTT +SGRNSSVENGSVRH G
Sbjct: 421 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRTADVTTIVSGRNSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 497

[Close]

BLAST of Clc08G00630 vs. ExPASy TrEMBL
Match: A0A6J1I7G4 (regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471962 PE=3 SV=1)

HSP 1 Score: 887.9 bits (2293), Expect = 3.4e-254
Identity = 462/514 (89.88%), Postives = 488/514 (94.94%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGR+NW Y+RPGKTSQK+QRYARAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRYNWCYFRPGKTSQKEQRYARAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T PEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSS+KKDGREGTIYKDPDYLE
Sbjct: 61  TIPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSSKKDGREGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSG AK+TPIVTPLMEFVRQKRAVESGTQGSSVPR
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKDTPIVTPLMEFVRQKRAVESGTQGSSVPR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRG AASSRK ESNSMKRGMEKKK          YILKDS KNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGVAASSRKHESNSMKRGMEKKK----------YILKDSGKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           EDQSATSSGIG+SDVGTAD GKKKILLLKGK RD+S+++DGMLQ QSATSSGNSPA+A+K
Sbjct: 241 EDQSATSSGIGISDVGTADSGKKKILLLKGKGRDVSHIADGMLQFQSATSSGNSPANATK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
            NQRREAGGSMIRSILLNN+ARHGQSSSVAQSHQKIQILNSDNGKRPPRPIN+RSGSNDM
Sbjct: 301 QNQRREAGGSMIRSILLNNDARHGQSSSVAQSHQKIQILNSDNGKRPPRPINSRSGSNDM 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           SSN+PNPSGSEGDGKRA ++KF+KKE HGLG+ASEKQEKRIRNKDRPDRGVWAPR RSDA
Sbjct: 361 SSNDPNPSGSEGDGKRAMENKFNKKEHHGLGNASEKQEKRIRNKDRPDRGVWAPRGRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
           SVSQL+ESSVSQS+HLLSDSVEAYRGEMK+D+HGSR GDVTTT+SGR+SSVENGSVRH G
Sbjct: 421 SVSQLDESSVSQSTHLLSDSVEAYRGEMKDDVHGSRTGDVTTTVSGRSSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGA H+MKDDGSLNPNEGKPSKRGVAGGHEKQV
Sbjct: 481 RRGAVHIMKDDGSLNPNEGKPSKRGVAGGHEKQV 504

[Close]

BLAST of Clc08G00630 vs. ExPASy TrEMBL
Match: A0A6J1D8M3 (regulator of nonsense transcripts UPF3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018259 PE=3 SV=1)

HSP 1 Score: 884.0 bits (2283), Expect = 4.9e-253
Identity = 460/514 (89.49%), Postives = 483/514 (93.97%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MKDPLERTKVVIRHLPPSLPHSDLFHHI DRFAGR+NW YYRPGKTSQKDQRY+RAYIDF
Sbjct: 1   MKDPLERTKVVIRHLPPSLPHSDLFHHIDDRFAGRYNWCYYRPGKTSQKDQRYSRAYIDF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
           T+PEDVFEFAEFFDGHVFVNEKG QYKAV+EYAPSQRVPRSSTKKDGR+GTIYKDPDYLE
Sbjct: 61  TRPEDVFEFAEFFDGHVFVNEKGTQYKAVIEYAPSQRVPRSSTKKDGRDGTIYKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQGSSVPR 482
           FLKLIAKPAEHLPSAEIQLERKEAEQSG AKETPIVTPLMEFVRQKRAVESGTQGSSV R
Sbjct: 121 FLKLIAKPAEHLPSAEIQLERKEAEQSGVAKETPIVTPLMEFVRQKRAVESGTQGSSVSR 180

Query: 483 KVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPRR 542
           KVKRGG ASSRKPESNSMKRGMEKKK          YILKDSVKNTNRRDKSNFILVPRR
Sbjct: 181 KVKRGGGASSRKPESNSMKRGMEKKK----------YILKDSVKNTNRRDKSNFILVPRR 240

Query: 543 EDQSATSSGIGVSDVGTADFGKKKILLLKGKERDISYVSDGMLQLQSATSSGNSPASASK 602
           +DQ ATSSGIG+SDV TAD GKKKILLLKGKERDIS+V+DGML LQSA+SSGNSP +A+K
Sbjct: 241 DDQPATSSGIGISDVTTADSGKKKILLLKGKERDISHVADGMLHLQSASSSGNSPTTATK 300

Query: 603 HNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGKRPPRPINARSGSNDM 662
            NQRREA GS+IRSILLNNE RHGQ SSV+QSHQKIQILNSDNGKRPPRPINARSGSNDM
Sbjct: 301 QNQRREASGSLIRSILLNNEPRHGQGSSVSQSHQKIQILNSDNGKRPPRPINARSGSNDM 360

Query: 663 SSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRNRSDA 722
           S+NEPNPSGSEGDGKRAP+SKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPR+RSDA
Sbjct: 361 SNNEPNPSGSEGDGKRAPESKFSKKELHGLGSASEKQEKRIRNKDRPDRGVWAPRSRSDA 420

Query: 723 SVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMSGRNSSVENGSVRHAG 782
            VSQL+ESS+SQSSHLLSDSVEA+R EMK+DIHGSR GDVTTT+SGR SSVENGSVRH G
Sbjct: 421 LVSQLDESSISQSSHLLSDSVEAFRVEMKDDIHGSRTGDVTTTVSGRGSSVENGSVRHVG 480

Query: 783 RRGAGHVMKDDGSLNPNEGKPSKRGVAGGHEKQV 817
           RRGAGHVMKDDGSLNPNEGK SKRG+AGGHEKQV
Sbjct: 481 RRGAGHVMKDDGSLNPNEGKSSKRGLAGGHEKQV 504

[Close]

BLAST of Clc08G00630 vs. TAIR 10
Match: AT1G33980.1 (Smg-4/UPF3 family protein )

HSP 1 Score: 379.4 bits (973), Expect = 7.5e-105
Identity = 243/532 (45.68%), Postives = 322/532 (60.53%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKTSQKDQRYARAYIDF 362
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+S K+Q+Y+RAY+ F
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSSYKNQKYSRAYVSF 60

Query: 363 TKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDYLE 422
             PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDYLE
Sbjct: 61  KAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDYLE 120

Query: 423 FLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SSVP 482
           FLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S + 
Sbjct: 121 FLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSDIR 180

Query: 483 RKVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILVPR 542
           R  +R    S+ KP     KR  EKKK          Y+ K+S KN  R+  ++ +   +
Sbjct: 181 RGGRRTRVVSANKPSPRPSKRNSEKKK----------YVEKESSKNVPRKTTAD-VSSSK 240

Query: 543 REDQSATSSG-----------IGVSDVG---TADFGKKKILLLKGKERDISYVSDGMLQL 602
            + + + SSG           I  S  G   T D GKKKILLL+ K+RD         + 
Sbjct: 241 PDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQPEQ 300

Query: 603 QSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDNGK 662
              T+   + ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N K
Sbjct: 301 HIDTNLSRN-STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAENYK 360

Query: 663 RPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRNKD 722
           RP RP N R+G                            K+ H  G+ SEKQE+R RNKD
Sbjct: 361 RPSRPANTRAG----------------------------KDYHTSGTISEKQERRTRNKD 420

Query: 723 RPDRGVWAPRNRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTTMS 782
           RPDR +WAPR   D S    E+  +S + +          GE+K+ +   R+G+V  +  
Sbjct: 421 RPDRVMWAPRR--DGS----EDQPLSSAGN---------NGEVKDRMFSQRSGEVVNSSG 473

Query: 783 GRNSSVENGSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQV 817
           G   ++ENGS RH+ RR  G   K++  +   EGK S+RG  GG   HEKQ+
Sbjct: 481 GH--TLENGSARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQM 473

[Close]

BLAST of Clc08G00630 vs. TAIR 10
Match: AT1G33980.2 (Smg-4/UPF3 family protein )

HSP 1 Score: 372.9 bits (956), Expect = 7.0e-103
Identity = 242/534 (45.32%), Postives = 321/534 (60.11%), Query Frame = 0


Query: 303 MKDPLERTKVVIRHLPPSLPHSDLFHHIHDRFAGRFNWSYYRPGKT--SQKDQRYARAYI 362
           MK+PL++ KVV+RHLPPSL  SDL   I  RFA R+NW  +RPGK+    K+Q+Y+RAY+
Sbjct: 1   MKEPLQKKKVVVRHLPPSLSQSDLLSQIDPRFADRYNWVSFRPGKSRLGYKNQKYSRAYV 60

Query: 363 DFTKPEDVFEFAEFFDGHVFVNEKGAQYKAVVEYAPSQRVPRSSTKKDGREGTIYKDPDY 422
            F  PEDV+EFA FF+GHVFVNEKGAQ+KA+VEYAPSQRVP+ S KKD REG+I KDPDY
Sbjct: 61  SFKAPEDVYEFAAFFNGHVFVNEKGAQFKAIVEYAPSQRVPKPSDKKDPREGSISKDPDY 120

Query: 423 LEFLKLIAKPAEHLPSAEIQLERKEAEQSGAAKETPIVTPLMEFVRQKRAVESGTQG-SS 482
           LEFLK+IA+P E+LPSAEIQLER+EAEQSGA+K  PIVTPLMEF+RQKRA   G QG S 
Sbjct: 121 LEFLKVIAQPVENLPSAEIQLERREAEQSGASKAAPIVTPLMEFIRQKRATVMGPQGLSD 180

Query: 483 VPRKVKRGGAASSRKPESNSMKRGMEKKKACYFQCLFSHYILKDSVKNTNRRDKSNFILV 542
           + R  +R    S+ KP     KR  EKKK          Y+ K+S KN  R+  ++ +  
Sbjct: 181 IRRGGRRTRVVSANKPSPRPSKRNSEKKK----------YVEKESSKNVPRKTTAD-VSS 240

Query: 543 PRREDQSATSSG-----------IGVSDVG---TADFGKKKILLLKGKERDISYVSDGML 602
            + + + + SSG           I  S  G   T D GKKKILLL+ K+RD         
Sbjct: 241 SKPDYRQSNSSGKELPGNETAAIIDSSPPGIALTMDSGKKKILLLRSKDRDNPDNPPPQP 300

Query: 603 QLQSATSSGNSPASASKHNQRREAGGSMIRSILLNNEARHGQSSSVAQSHQKIQILNSDN 662
           +    T+   + ++ S+ NQ+ + GG +I+ ILL N++R  QSS+  QS Q+++   ++N
Sbjct: 301 EQHIDTNLSRN-STDSRQNQKSDVGGRLIKGILLRNDSRPSQSSTFVQSEQRVEPSEAEN 360

Query: 663 GKRPPRPINARSGSNDMSSNEPNPSGSEGDGKRAPDSKFSKKELHGLGSASEKQEKRIRN 722
            KRP RP N R+G                            K+ H  G+ SEKQE+R RN
Sbjct: 361 YKRPSRPANTRAG----------------------------KDYHTSGTISEKQERRTRN 420

Query: 723 KDRPDRGVWAPRNRSDASVSQLEESSVSQSSHLLSDSVEAYRGEMKEDIHGSRAGDVTTT 782
           KDRPDR +WAPR   D S    E+  +S + +          GE+K+ +   R+G+V  +
Sbjct: 421 KDRPDRVMWAPRR--DGS----EDQPLSSAGN---------NGEVKDRMFSQRSGEVVNS 475

Query: 783 MSGRNSSVENGSVRHAGRRGAGHVMKDDGSLNPNEGKPSKRGVAGG---HEKQV 817
             G   ++ENGS RH+ RR  G   K++  +   EGK S+RG  GG   HEKQ+
Sbjct: 481 SGGH--TLENGSARHSSRRVGGRNRKEEVVI--GEGKTSRRGSGGGPSSHEKQM 475

The following BLAST results are available for this feature:

BLAST of Clc08G00630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459659.1	3.0e-265	94.36	PREDICTED: regulator of nonsense transcripts UPF3 isoform X1 [Cucumis melo]	[more]
XP_011656113.1	2.5e-264	94.16	regulator of nonsense transcripts UPF3 isoform X1 [Cucumis sativus]	[more]
XP_038890175.1	5.7e-264	93.77	regulator of nonsense transcripts UPF3 isoform X1 [Benincasa hispida] >XP_038890...	[more]
XP_038890177.1	1.5e-261	93.39	regulator of nonsense transcripts UPF3 isoform X2 [Benincasa hispida]	[more]
XP_008459660.1	3.8e-260	93.19	PREDICTED: regulator of nonsense transcripts UPF3 isoform X2 [Cucumis melo]	[more]

BLAST of Clc08G00630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FVW4	1.1e-103	45.68	Regulator of nonsense transcripts UPF3 OS=Arabidopsis thaliana OX=3702 GN=UPF3 P...	[more]
B0S733	2.7e-19	34.13	Regulator of nonsense transcripts 3A OS=Danio rerio OX=7955 GN=upf3a PE=1 SV=2	[more]
Q9BZI7	4.8e-16	26.62	Regulator of nonsense transcripts 3B OS=Homo sapiens OX=9606 GN=UPF3B PE=1 SV=1	[more]
Q9H1J1	3.5e-14	29.76	Regulator of nonsense transcripts 3A OS=Homo sapiens OX=9606 GN=UPF3A PE=1 SV=1	[more]
Q10267	6.5e-13	25.09	Nonsense-mediated mRNA decay protein 3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of Clc08G00630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CB69	1.5e-265	94.36	regulator of nonsense transcripts UPF3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KSY5	1.2e-264	94.16	Smg4_UPF3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650630 P...	[more]
A0A1S3CBX5	1.8e-260	93.19	regulator of nonsense transcripts UPF3 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1I7G4	3.4e-254	89.88	regulator of nonsense transcripts UPF3-like isoform X1 OS=Cucurbita maxima OX=36...	[more]
A0A6J1D8M3	4.9e-253	89.49	regulator of nonsense transcripts UPF3 isoform X1 OS=Momordica charantia OX=3673...	[more]

BLAST of Clc08G00630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33980.1	7.5e-105	45.68	Smg-4/UPF3 family protein	[more]
AT1G33980.2	7.0e-103	45.32	Smg-4/UPF3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005120	UPF3 domain	PFAM	PF03467	Smg4_UPF3	coord: 308..470 e-value: 9.5E-51 score: 172.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 303..399 e-value: 8.8E-32 score: 111.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 588..606
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 656..671
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 760..777
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 719..739
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 588..609
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 759..809
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 624..643
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 624..739
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 470..503
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 676..715
None	No IPR available	PANTHER	PTHR13112:SF5	REGULATOR OF NONSENSE TRANSCRIPTS UPF3	coord: 303..818
None	No IPR available	CDD	cd12455	RRM_like_Smg4_UPF3	coord: 311..396 e-value: 8.30231E-33 score: 119.665
IPR039722	Nonsense-mediated mRNA decay protein 3	PANTHER	PTHR13112	UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN	coord: 303..818
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 310..399

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc08G00630.1	Clc08G00630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0045727	positive regulation of translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding