Clc08G00030 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGAATCACAAAAATTATGAAGCACCCAGTTGTGGTGAGTTGAAGAAGACGGTGAGGCAAAAAGATTCATTCCGATGGAGTAAGGAGGATGAATTAATTGTCCTTGAGAAGCTGTTGGAATTTTCAAGCCAAAATAAGAATGCTAATTATTACACTTGTCAATTCTACATGTATGTGAACAAAATGTTAAGTGTTCAAGTGTCAGAGAATCAATTGTGTTACATGATATATTGTTTGAGAAAACAATATTTAGATTCAAAGGATGATGATTTGGATTGGAATAATGAGATCAGGGTCAGAGTTTTGGAATTATCGGAGAGAATATGGGGAGGTGATAGGAATGAAGGGTGGTACTGGGCAAAGACAAAAGTGATGAGAGATAATAATGAGCAATATTTGAAAGATTATGTTGTTGAAGAATTAGGGTTTCCGGTGGAATGCTTGTCAACTTCTATTGTCGATGCAATTAAGAAAGATTGGGAACATTTTCGATTTGTTGAGGATGAGTTTCGAACCATGCAACATCGATTTACTTTGCAGCTTTGTCAACTCAACAACAACATTCATAACACTCAAACTTCTAATTCAAGTACCTCAAACCTTTAG ATGATGAATCACAAAAATTATGAAGCACCCAGTTGTGGTGAGTTGAAGAAGACGGTGAGGCAAAAAGATTCATTCCGATGGAGTAAGGAGGATGAATTAATTGTCCTTGAGAAGCTGTTGGAATTTTCAAGCCAAAATAAGAATGCTAATTATTACACTTGTCAATTCTACATGTATGTGAACAAAATGTTAAGTGTTCAAGTGTCAGAGAATCAATTGTGTTACATGATATATTGTTTGAGAAAACAATATTTAGATTCAAAGGATGATGATTTGGATTGGAATAATGAGATCAGGGTCAGAGTTTTGGAATTATCGGAGAGAATATGGGGAGGTGATAGGAATGAAGGGTGGTACTGGGCAAAGACAAAAGTGATGAGAGATAATAATGAGCAATATTTGAAAGATTATGTTGTTGAAGAATTAGGGTTTCCGGTGGAATGCTTGTCAACTTCTATTGTCGATGCAATTAAGAAAGATTGGGAACATTTTCGATTTGTTGAGGATGAGTTTCGAACCATGCAACATCGATTTACTTTGCAGCTTTGTCAACTCAACAACAACATTCATAACACTCAAACTTCTAATTCAAGTACCTCAAACCTTTAG ATGATGAATCACAAAAATTATGAAGCACCCAGTTGTGGTGAGTTGAAGAAGACGGTGAGGCAAAAAGATTCATTCCGATGGAGTAAGGAGGATGAATTAATTGTCCTTGAGAAGCTGTTGGAATTTTCAAGCCAAAATAAGAATGCTAATTATTACACTTGTCAATTCTACATGTATGTGAACAAAATGTTAAGTGTTCAAGTGTCAGAGAATCAATTGTGTTACATGATATATTGTTTGAGAAAACAATATTTAGATTCAAAGGATGATGATTTGGATTGGAATAATGAGATCAGGGTCAGAGTTTTGGAATTATCGGAGAGAATATGGGGAGGTGATAGGAATGAAGGGTGGTACTGGGCAAAGACAAAAGTGATGAGAGATAATAATGAGCAATATTTGAAAGATTATGTTGTTGAAGAATTAGGGTTTCCGGTGGAATGCTTGTCAACTTCTATTGTCGATGCAATTAAGAAAGATTGGGAACATTTTCGATTTGTTGAGGATGAGTTTCGAACCATGCAACATCGATTTACTTTGCAGCTTTGTCAACTCAACAACAACATTCATAACACTCAAACTTCTAATTCAAGTACCTCAAACCTTTAG MMNHKNYEAPSCGELKKTVRQKDSFRWSKEDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSTSIVDAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNNNIHNTQTSNSSTSNL Homology
BLAST of Clc08G00030 vs. NCBI nr
Match: KAG6607616.1 (hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 194.5 bits (493), Expect = 8.8e-46 Identity = 102/194 (52.58%), Postives = 138/194 (71.13%), Query Frame = 0
BLAST of Clc08G00030 vs. NCBI nr
Match: XP_022158998.1 (probable transcription factor At4g01260 [Momordica charantia]) HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11 Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 0
BLAST of Clc08G00030 vs. NCBI nr
Match: XP_022951915.1 (probable transcription factor At1g66420 [Cucurbita moschata]) HSP 1 Score: 77.4 bits (189), Expect = 1.6e-10 Identity = 54/177 (30.51%), Postives = 94/177 (53.11%), Query Frame = 0
BLAST of Clc08G00030 vs. NCBI nr
Match: KAG6585873.1 (putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 76.6 bits (187), Expect = 2.7e-10 Identity = 52/166 (31.33%), Postives = 88/166 (53.01%), Query Frame = 0
BLAST of Clc08G00030 vs. NCBI nr
Match: XP_038877618.1 (STOREKEEPER protein-like [Benincasa hispida]) HSP 1 Score: 75.9 bits (185), Expect = 4.5e-10 Identity = 52/180 (28.89%), Postives = 88/180 (48.89%), Query Frame = 0
BLAST of Clc08G00030 vs. ExPASy Swiss-Prot
Match: Q9SYA9 (Probable transcription factor At1g61730 OS=Arabidopsis thaliana OX=3702 GN=At1g61730 PE=1 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 2.1e-05 Identity = 31/100 (31.00%), Postives = 59/100 (59.00%), Query Frame = 0
BLAST of Clc08G00030 vs. ExPASy Swiss-Prot
Match: C0SUU6 (Probable transcription factor At1g11510 OS=Arabidopsis thaliana OX=3702 GN=At1g11510 PE=1 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 5.1e-04 Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 0
BLAST of Clc08G00030 vs. ExPASy TrEMBL
Match: A0A6J1DXL5 (probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111025442 PE=3 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 8.9e-12 Identity = 58/191 (30.37%), Postives = 93/191 (48.69%), Query Frame = 0
BLAST of Clc08G00030 vs. ExPASy TrEMBL
Match: A0A6J1GK86 (probable transcription factor At1g66420 OS=Cucurbita moschata OX=3662 GN=LOC111454655 PE=3 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 7.6e-11 Identity = 54/177 (30.51%), Postives = 94/177 (53.11%), Query Frame = 0
BLAST of Clc08G00030 vs. ExPASy TrEMBL
Match: A0A6J1I882 (probable transcription factor At1g61730 OS=Cucurbita maxima OX=3661 GN=LOC111471848 PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10 Identity = 54/178 (30.34%), Postives = 94/178 (52.81%), Query Frame = 0
BLAST of Clc08G00030 vs. ExPASy TrEMBL
Match: A0A5A7UKP8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00330 PE=3 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 7.1e-09 Identity = 60/209 (28.71%), Postives = 102/209 (48.80%), Query Frame = 0
BLAST of Clc08G00030 vs. ExPASy TrEMBL
Match: A0A5N6NIF3 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_20090 PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 9.0e-04 Identity = 28/94 (29.79%), Postives = 57/94 (60.64%), Query Frame = 0
BLAST of Clc08G00030 vs. TAIR 10
Match: AT1G61730.1 (DNA-binding storekeeper protein-related transcriptional regulator ) HSP 1 Score: 50.8 bits (120), Expect = 1.5e-06 Identity = 31/100 (31.00%), Postives = 59/100 (59.00%), Query Frame = 0
BLAST of Clc08G00030 vs. TAIR 10
Match: AT1G11510.1 (DNA-binding storekeeper protein-related transcriptional regulator ) HSP 1 Score: 46.2 bits (108), Expect = 3.6e-05 Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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