Clc07G15040 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G15040
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	transcription factor bHLH153-like isoform X1
Location	ClcChr07: 29605393 .. 29609487 (+)
RNA-Seq Expression	Clc07G15040
Synteny	Clc07G15040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTCAATTCCCGGTGTGTGTTTCGTTTGATTAATTTATTTCTTTGTTTTTGTTTTTCAGGAATACTTCTTGAACTGCGTTTCAATTACTGTATTTTGTCTTTTTGTTTCCGAGTAGTGAATACTTTCTAACCTTTGTTTTTTTTTTGTCTTCTTTCTATCTGTGTCCATGCTAAACTGTGTAAGATTGTAGTTTATTGATTTGTGAAGTTTTTGATAATTGTGCTATTCGTTTCATTATATATCATAATCTGGTTATACTGTCTGGTTTTCTGCCATTGATTGGTATGTTCAAGATATTTAATGAAGGGGTAGGAAGATGCTGTACGCAAATTACATATTCTCTTAATTTAATCCATGCGCAGTGTGAATTTGTTTATCTATTTTTGAAAAGAAAAAAATGAAAAAGAATTTGTGTATCTGGGCCCACCTTTGTTTCATTTATATCATCTGCTTCGTTTAAAATACTTATTCTGGATTCCAATTACCCAACACTTTTACTTTTGGCAAAAAGTAAAAGGAAAAGGAAAAATTTACAGGTGTTCTCCCGTTTCTTATTCCAATGTATCATTAGTTTTTGTAACTTTGTTTGTGTATTCATATCTTGGGTTGTCTTTTGTGATGAAAGGTTCACTGAATTTCCTCTTTTTACTGACAAAAAGAGCCAAATTTTGATTGAAAGATGCAACTTTTAACTGTTTGTTTGTCAAAATGCTCAGTGTGAAAAGCCAAATCCAGATCCTTTTAATTTGGGGATGAATTGCTAAGAGATGAGTGTATTCATTTGTTTAGTTCATGTATATTGCTCTTGTTGTTATTAACCTATTTATCCCAATATAGTATTCCTCTGACCCTACCTTTTTCTTAATTATTATTGCTAATTGTGCTTATTTTTTTTTTGCAATATTATATTCGTTGGAGATCGTCATGAAACTATGGAACTTTTGTCCACTTGTTTTCCCTTTGTCTGTTAGTATTTTTTATTAATATTGATAATTGTTGTTAATGTAGTAGATCGAATGGATCATATTATACTCCTTTTTTAGGGTGTTGGTTTGACCTCTGACCATGGCCATGACCATGATTGGGTTTTCTTATTAATTTAACAATCCAATGTGATATACATTATCTGCATGCTGTCTGAACCTCTGCATCAAAGTAATAATGTTTTGTCCAATCTATGGGAATGCAATTATTTCAAGGCATTTAATTAAAACTCACGTAGGTGGGAGTTCTATTTCTTGGTTGTAATATTCATTTGGTAAAAGAAGTCAAACAATATGTATTTATATGTAAATACACACGAACACAGGCATTTAAAAATATCCCTGTCTTGAACCTGTGGGAGTATACCTGTGTAGTTTCAGATTTTCTCAGTTGACTTTCGTTGTTTGAGATCTTTTATAGATCAAATCTCTTTGGAGTATCTTTGCAATTTCTTTCTTCCCCTCAATAAATTTGTTATATTTTATTATGAAAGGTTAAATTACAAGTTTAGTCCTTGAACTTTGAGGTTTGTGTCCATTTGTTTATGAAATTTTCGTACGTGTCTAATAGGTCCCTATACTTTCAATTTTGTATCTAGTAATGCCTTGAAAATTTTGAATCTTTTTTATAAAAATTAATTGTTCAATTAGATATGAATTTGAATTTTATGTTTAATAGAACCTTAAATTTTCAATTTTCAATTATGTGTCTAGTCTGTCTAATTTTAAAAAATTCAAATGTTCGAGGTCTAAGTTTATAATTTTGGAAGTTTAGAGAGTACACAGAAATAAATTTCAAGTTCAAGACTAAATATGTAATTTGACAAATATCAAAATATAGTGCTCATTTAGACTTGCAACATTGGATATTTGTTGCCTATGTTCCTTGCATCTTTATTGATTGAATTTGATCTCTGTTCTAGGCAGAAGTGATGGACGTAGAAACGATGATGGAACAGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACCCAAGACTGATTTCTCCATCTCCTCTAAGGTTCCTATTGTTGGTTCAACTTCACGTAGCAGCATATTGAAGATTAAGTTCCTATAATAGTGATAACTAGTCAGTGTTAATAGTATATATATAGTAAGTTTTGGGCGGTCCATTAGACAGGCCGTCTGATCACATTATTTTGGGTGGTCCAATTGTATTTCATTATTTTTCACTTGATTAGTCCCTATATCGACCTGTTTTGTTCTATACGATATGCTCTGCCCCTTCATCCCATCCCATGGTTTTCCAAGTACTAATACTCTTTCTACAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGGTTTGTTGGGAACCAGTTAAATATTCAAAGACTTTTTATTGAAATTTCAGGATAATATTGAGGGTTTATATGATCTGGACCAAATTTTATTTTGGCTCTTGAAATCTATAAAGCAATGTTTCGTAAATTTGCTACAAGTATTAAAATCATGGCCTTGTTTGAACTAAAATTGTACAATTTCACTGCAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTATGATCTTGCTTAAAGTTTGTGATCTTTTGAATTCTGATTTGGGTACCAGATACGGATGGCTATCATGCCATGCATGTAGCTTTTCTATGCCTGTATGATACTTTTTCCCTCCATAAATTCCTTCTAATCGGTCCAGGGAATATATTTCTTTCTTACTTCCATATTTTGCCTCCGACACTAGTTAGTACTTGCATGCAAAAGCCTTTGAGCATCAATCAGTGGCCAAAAATTCATTGCATCTTTTTTGGTGTAATTTGATATCACTTTGGTTTATGACTCTCTCCCCCCCTTTGTCTCTCTTTTTCTACTGGACATTGTTTGCTCGAGTATTTTTCTATGCCTATTTTAGTTTTAGGTTTTTAGTCATCGTGTCCTTTCCTCCATCACTTCCTCTAATCAGCAATGGAACATGAGCTGCAAGATCGAATCAATTAATAATTGTGCAACCAGTTATGGTTCTCTCTTCGTATAGACTATGATTGAGTCGTATATGTAAGAGAATCTTGTTGACCATAGTTCATTAATGTAATCATGTTTGCCTAGTTTTCAACCGTTGATTTATTTATCATTTAAGTCCATGAAATTGGTGCAGTTTGGATAGTGAACGACTAGAACAGAGAAATTAATCGACATCCACCAGGATTGATCTGTGACATAGACTGAAAATTTGTCTGCCATACTTCCTATGAACTTTATTTAATACTAATTGTGTATTGCGGCTAGAACTCTCAAGTGTAGTTATATATTCCTTATGTTATGTTGGCGTGCTTTCAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGTGAGCCTAGGCTGGACCTTTCGTTTCATGATTTGACTAAAAGTGTGTTTTGTAAATACTTTTTCTTAAAGGAAAAATAACGCAAACGTCTGTTCCCCCAGGGAGATTAACATAGTGTGTTCCTTAAACCTCAACATTTGTCTTTGTTAAATCATCAATCAACCCAAAAGTTTAAATAAGTTACGTTAAATTTAATTATATCAATAACTCAATTTCCTCACACTCAATCTCCTCACTTGTGAGCTTGGAAATTTATAAAAGGTCTAACATAAAACCAACTTCAATATCATGTTAAATCACCAGATTAAGCAACTCAAAAGCTTCATGTATGTATTTCAATAATGTGATCATTTTCACCGCTTTATATATTGGATTCAAGTCGGGGTGATGCTTCAACATCCAGATGTAAATCTTTTTGAATACAGTCGCAAGATTTATATTGGTTTTTTTTTTCTGTTAGGAGCTGGAGGCATGCAGCCACAGCCTGAGGAGCAGAGGCCTATGTCTTGTTCCAATCTCGTATACTGCTGGAGTTGCGCGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA

mRNA sequence

ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTCAATTCCCGGCAGAAGTGATGGACGTAGAAACGATGATGGAACAGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACCCAAGACTGATTTCTCCATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGGCATGCAGCCACAGCCTGAGGAGCAGAGGCCTATGTCTTGTTCCAATCTCGTATACTGCTGGAGTTGCGCGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA

Coding sequence (CDS)

ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTCAATTCCCGGCAGAAGTGATGGACGTAGAAACGATGATGGAACAGAAGAGGAGTCTATGCTCTGTTGATGAGAGCGCTCTCACTTCTCTTACATCCAAGCGACCCAAGACTGATTTCTCCATCTCCTCTAAGGAGAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCAATGGAATATATCCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTTTGTTGCAGGAGCTGGAGGCATGCAGCCACAGCCTGAGGAGCAGAGGCCTATGTCTTGTTCCAATCTCGTATACTGCTGGAGTTGCGCGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAATTTCCCCCAAATTTGAGAAGCCTATCTCACCATTCAATTGA

Protein sequence

MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN

Homology

[Close]

BLAST of Clc07G15040 vs. NCBI nr
Match: XP_038906434.1 (transcription factor bHLH153-like isoform X1 [Benincasa hispida])

HSP 1 Score: 308.5 bits (789), Expect = 3.4e-80
Identity = 161/167 (96.41%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVMDVETMMEQKRSLCSVDESALTSLTSKR KTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+E C
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLRSRGLCLVPIS TAGVARSNGADIWAPVKTISPK+EKPISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKYEKPISPFN 167

[Close]

BLAST of Clc07G15040 vs. NCBI nr
Match: XP_008454045.1 (PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 159/167 (95.21%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVM+VETMMEQKRSLCSVDESALTSLT KR KTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+E C
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLRSRGLCLVPIS TAGVARSNGADIWAPVKTISPKFEK ISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Clc07G15040 vs. NCBI nr
Match: XP_004152130.1 (transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein Csa_015180 [Cucumis sativus])

HSP 1 Score: 301.6 bits (771), Expect = 4.2e-78
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVM+VETMMEQKR+LCSVDESALTSLT KR KTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+E C
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLRSRGLCLVPIS TAGVARSNGADIWAPVKTISPKFEK ISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Clc07G15040 vs. NCBI nr
Match: XP_022158392.1 (transcription factor bHLH153-like isoform X1 [Momordica charantia])

HSP 1 Score: 287.7 bits (735), Expect = 6.3e-74
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNA+A+FPAEVM+VETMMEQKR++CSVDES LTSLT KR KTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTV LQELE  
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPY 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLR+RGLCLVPIS TAGVARSNGADIWAPVKT SPKFEK ISPFN
Sbjct: 121 SHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKAISPFN 167

[Close]

BLAST of Clc07G15040 vs. NCBI nr
Match: XP_022979448.1 (transcription factor bHLH153-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 7.0e-73
Identity = 149/167 (89.22%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVM+VETMME KRSLCSVDES+LTSLTSKR KT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKVLSAPYLQSTPTV LQE E C
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKVLSAPYLQSTPTVQLQEQEPC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLRSRGLCLVPIS  AGVA SNGADIWAPVKTISPKFE  ISPF+
Sbjct: 121 SHSLRSRGLCLVPISCIAGVASSNGADIWAPVKTISPKFENAISPFD 167

[Close]

BLAST of Clc07G15040 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.1e-44
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 19  DVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKT 78
           D   MME KR++CS+ ES++     KR K+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 79  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTA 138
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 139 GVARSNGADIWAPVKT-ISPKF 160
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Clc07G15040 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.2e-40
Identity = 88/134 (65.67%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 21  ETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKTDT 80
           E MME KR++ S++++ +     +   +D S SSKERKDKL ERI ALQQLVSPYGKTDT
Sbjct: 9   EMMMETKRNVYSLEDNKI----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTDT 68

Query: 81  ASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTAGV 140
           ASVLLE M+YIQFL EQVKVLSAPYLQ+TP+   +E+E   +SLRS+GLCLVP+ YT+ V
Sbjct: 69  ASVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVE--EYSLRSKGLCLVPLEYTSEV 128

Query: 141 ARSNGADIWAPVKT 155
           A++NGADIWAPVKT
Sbjct: 129 AQTNGADIWAPVKT 136

[Close]

BLAST of Clc07G15040 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-22
Identity = 64/124 (51.61%), Postives = 83/124 (66.94%), Query Frame = 0


Query: 34  DESALTSLTSKRPKTDFSIS-SKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQ 93
           D++       KR +   S+  +K RK++LGERI ALQQLVSPYGKTD ASVL EAM YI+
Sbjct: 132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIK 191

Query: 94  FLHEQVKVLSAPYLQSTPT---VLLQELEAC--SHSLRSRGLCLVPISYTAGVARSNGAD 152
           FL +Q++VL +PYL +      V+  ++ A   +  LRSRGLCLVP+S T  V  SNGAD
Sbjct: 192 FLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGAD 251

[Close]

BLAST of Clc07G15040 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-21
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 43  SKRPKTDFSISSK--ERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKV 102
           +KR K++ +  S   +RK+K+G+RI ALQQLVSP+GKTD ASVL EA+EYI+FLH+QV  
Sbjct: 330 AKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSA 389

Query: 103 LSAPYLQSTPTVLLQ------ELEACSH-SLRSRGLCLVPISYTAGVARSNGADIWAP 152
           LS PY++S  ++  Q      ELE      LRSRGLCLVP+S T  V      D W P
Sbjct: 390 LSNPYMKSGASLQHQQSDHSTELEVSEEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of Clc07G15040 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-20
Identity = 56/106 (52.83%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 55  KERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLL 114
           K RK+ L ++I +LQQLVSP+GKTDTASVL EA+EYI+FLH+QV VLS PY++   +   
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 115 QEL---------EACSHSLRSRGLCLVPISYTAGVARSNGADIWAP 152
           Q+          E  +H LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of Clc07G15040 vs. ExPASy TrEMBL
Match: A0A1S3BYX6 (transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494587 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.2e-79
Identity = 159/167 (95.21%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVM+VETMMEQKRSLCSVDESALTSLT KR KTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRSLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+E C
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLRSRGLCLVPIS TAGVARSNGADIWAPVKTISPKFEK ISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Clc07G15040 vs. ExPASy TrEMBL
Match: A0A0A0KYW4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.0e-78
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVM+VETMMEQKR+LCSVDESALTSLT KR KTDFSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEQKRTLCSVDESALTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQE+E C
Sbjct: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQEVEPC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLRSRGLCLVPIS TAGVARSNGADIWAPVKTISPKFEK ISPFN
Sbjct: 121 SHSLRSRGLCLVPISCTAGVARSNGADIWAPVKTISPKFEKHISPFN 167

[Close]

BLAST of Clc07G15040 vs. ExPASy TrEMBL
Match: A0A6J1DX43 (transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024885 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNA+A+FPAEVM+VETMMEQKR++CSVDES LTSLT KR KTDFSISSKERKDK
Sbjct: 1   MIASSLCNATAKFPAEVMEVETMMEQKRNMCSVDESNLTSLTPKRHKTDFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGERI+ALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTV LQELE  
Sbjct: 61  LGERIVALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQELEPY 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLR+RGLCLVPIS TAGVARSNGADIWAPVKT SPKFEK ISPFN
Sbjct: 121 SHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKAISPFN 167

[Close]

BLAST of Clc07G15040 vs. ExPASy TrEMBL
Match: A0A6J1IW85 (transcription factor bHLH153-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111479164 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.4e-73
Identity = 149/167 (89.22%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVM+VETMME KRSLCSVDES+LTSLTSKR KT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKVLSAPYLQSTPTV LQE E C
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKVLSAPYLQSTPTVQLQEQEPC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SHSLRSRGLCLVPIS  AGVA SNGADIWAPVKTISPKFE  ISPF+
Sbjct: 121 SHSLRSRGLCLVPISCIAGVASSNGADIWAPVKTISPKFENAISPFD 167

[Close]

BLAST of Clc07G15040 vs. ExPASy TrEMBL
Match: A0A6J1GW57 (transcription factor bHLH153-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457969 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.9e-72
Identity = 147/167 (88.02%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MIASSLCNASAQFPAEVMDVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDK 60
           MIASSLCNASA+FPAEVM+VETMME KRSLCSVDES+LTSLTSKR KT FSISSKERKDK
Sbjct: 1   MIASSLCNASAKFPAEVMEVETMMEHKRSLCSVDESSLTSLTSKRHKTGFSISSKERKDK 60

Query: 61  LGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEAC 120
           LGER++ALQQLVSPYGKTDTASVLLEAMEYIQFLH+QVKVLSAPYLQSTPTV LQE E C
Sbjct: 61  LGERVLALQQLVSPYGKTDTASVLLEAMEYIQFLHKQVKVLSAPYLQSTPTVQLQEQEKC 120

Query: 121 SHSLRSRGLCLVPISYTAGVARSNGADIWAPVKTISPKFEKPISPFN 168
           SH LRS+GLCLVPIS  AGVA SNGADIWAPVKTISPKFE  ISPF+
Sbjct: 121 SHRLRSKGLCLVPISCIAGVASSNGADIWAPVKTISPKFENAISPFD 167

[Close]

BLAST of Clc07G15040 vs. TAIR 10
Match: AT1G05710.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 19  DVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKT 78
           D   MME KR++CS+ ES++     KR K+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 79  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTA 138
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 139 GVARSNGADIWAPVKT-ISPKF 160
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Clc07G15040 vs. TAIR 10
Match: AT1G05710.4 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 19  DVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKT 78
           D   MME KR++CS+ ES++     KR K+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 79  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTA 138
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 139 GVARSNGADIWAPVKT-ISPKF 160
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Clc07G15040 vs. TAIR 10
Match: AT1G05710.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 19  DVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKT 78
           D   MME KR++CS+ ES++     KR K+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 79  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTA 138
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 139 GVARSNGADIWAPVKT-ISPKF 160
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Clc07G15040 vs. TAIR 10
Match: AT1G05710.5 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-45
Identity = 97/142 (68.31%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 19  DVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKT 78
           D   MME KR++CS+ ES++     KR K+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 79  DTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVLLQELEACSHSLRSRGLCLVPISYTA 138
           DTASVLL+AM YI+FLHEQVKVLSAPYLQ+ P    +ELE   +SLR+RGLCLVP+  T 
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE--QYSLRNRGLCLVPMENTV 125

Query: 139 GVARSNGADIWAPVKT-ISPKF 160
           GVA+SNGADIWAPVKT +SP F
Sbjct: 126 GVAQSNGADIWAPVKTPLSPAF 140

[Close]

BLAST of Clc07G15040 vs. TAIR 10
Match: AT1G05710.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-41
Identity = 97/164 (59.15%), Postives = 114/164 (69.51%), Query Frame = 0


Query: 19  DVETMMEQKRSLCSVDESALTSLTSKRPKTDFSISSKERKDKLGERIMALQQLVSPYGKT 78
           D   MME KR++CS+ ES++     KR K+D S SSKERKDK+GERI ALQQ+VSPYGKT
Sbjct: 6   DAGMMMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKT 65

Query: 79  DTASVLLEAMEYIQFLHEQVK----------------------VLSAPYLQSTPTVLLQE 138
           DTASVLL+AM YI+FLHEQVK                      VLSAPYLQ+ P    +E
Sbjct: 66  DTASVLLDAMHYIEFLHEQVKVCSSIPSMIHSSLSEFPCSFVQVLSAPYLQTVPDATQEE 125

Query: 139 LEACSHSLRSRGLCLVPISYTAGVARSNGADIWAPVKT-ISPKF 160
           LE   +SLR+RGLCLVP+  T GVA+SNGADIWAPVKT +SP F
Sbjct: 126 LE--QYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKTPLSPAF 162

The following BLAST results are available for this feature:

BLAST of Clc07G15040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906434.1	3.4e-80	96.41	transcription factor bHLH153-like isoform X1 [Benincasa hispida]	[more]
XP_008454045.1	1.9e-78	95.21	PREDICTED: transcription factor bHLH113-like isoform X2 [Cucumis melo]	[more]
XP_004152130.1	4.2e-78	94.61	transcription factor bHLH153 [Cucumis sativus] >KGN53021.1 hypothetical protein ...	[more]
XP_022158392.1	6.3e-74	90.42	transcription factor bHLH153-like isoform X1 [Momordica charantia]	[more]
XP_022979448.1	7.0e-73	89.22	transcription factor bHLH153-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Clc07G15040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	4.1e-44	68.31	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	6.2e-40	65.67	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q9LT67	3.4e-22	51.61	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q8GXT3	2.2e-21	51.69	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]
Q94JL3	3.2e-20	52.83	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]

BLAST of Clc07G15040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BYX6	9.2e-79	95.21	transcription factor bHLH113-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0KYW4	2.0e-78	94.61	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G011680 PE=4 S...	[more]
A0A6J1DX43	3.0e-74	90.42	transcription factor bHLH153-like isoform X1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1IW85	3.4e-73	89.22	transcription factor bHLH153-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GW57	2.9e-72	88.02	transcription factor bHLH153-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Clc07G15040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05710.1	2.9e-45	68.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.4	2.9e-45	68.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.3	2.9e-45	68.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.5	2.9e-45	68.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.2	2.0e-41	59.15	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 53..100 e-value: 4.3E-4 score: 29.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 45..94 score: 11.813869
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 42..124 e-value: 8.0E-9 score: 37.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 50..108
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 18..151
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 18..151
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 51..102 e-value: 3.4027E-23 score: 84.5403

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G15040.1	Clc07G15040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding