Clc07G11280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G11280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr07: 25934064 .. 25934684 (+)
RNA-Seq Expression	Clc07G11280
Synteny	Clc07G11280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATGGAGAGAAAAAGATTGAGTAAATTAAAAAAGAAAAAAAGATGTTACCAAACAATTTAAGTTTCAATTATGAATTAGCGAATAACATGGCTTTGAATTTTCAAGCATCTTCTTCCTCTATAAATAGTTCCTTTTTCCCTCTCTGTTTTCCTCACACAATCTCATCTCATCTCTCTTTCTCTCTATTACATCTGAAAAATCATGATCAGCAACTTGATTTCAACCTTGAACAAAAAGCTGCAGGCTGTCGAAATTAGTAATCGCGGCAGACGAACGAAGAAGACCACTAATTACGCATACAGAGACGATCTGAGCAAGAAGAACCCGTCGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGACACAGAACCGGTGATAATCGCCATTACTGACACAGAGGAGCGGATTAAAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTAACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGATTTCGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCAATGTTGGCCAATTGAGTTCCCCCCCCCTCCTCCCCCCCC

mRNA sequence

AAGATGGAGAGAAAAAGATTGAGTAAATTAAAAAAGAAAAAAAGATGTTACCAAACAATTTAAGTTTCAATTATGAATTAGCGAATAACATGGCTTTGAATTTTCAAGCATCTTCTTCCTCTATAAATAGTTCCTTTTTCCCTCTCTGTTTTCCTCACACAATCTCATCTCATCTCTCTTTCTCTCTATTACATCTGAAAAATCATGATCAGCAACTTGATTTCAACCTTGAACAAAAAGCTGCAGGCTGTCGAAATTAGTAATCGCGGCAGACGAACGAAGAAGACCACTAATTACGCATACAGAGACGATCTGAGCAAGAAGAACCCGTCGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGACACAGAACCGGTGATAATCGCCATTACTGACACAGAGGAGCGGATTAAAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTAACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGATTTCGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCAATGTTGGCCAATTGAGTTCCCCCCCCCTCCTCCCCCCCC

Coding sequence (CDS)

ATGATCAGCAACTTGATTTCAACCTTGAACAAAAAGCTGCAGGCTGTCGAAATTAGTAATCGCGGCAGACGAACGAAGAAGACCACTAATTACGCATACAGAGACGATCTGAGCAAGAAGAACCCGTCGCCGGAGATCAAGAAAGTGAAGAAGAGAGTGAGATTTGCCGACACAGAACCGGTGATAATCGCCATTACTGACACAGAGGAGCGGATTAAAGAGGAGGAAACAGAGAAGAAAGTTGTGAGAATTACGGTGAAATTAACGAAACAAGAAGCGAATCGAATGCTTTCGAGGTGCTCCGATGGCGGCGTTCTCGATTTCGGAGATGTGGCTTGTGAACTCATGCGAATTCCTGCAACTCGAGTTAGTTCATCAATGTTGGCCAATTGA

Protein sequence

MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSPEIKKVKKRVRFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVACELMRIPATRVSSSMLAN

Homology

[Close]

BLAST of Clc07G11280 vs. NCBI nr
Match: XP_038906331.1 (uncharacterized protein LOC120092170 [Benincasa hispida])

HSP 1 Score: 204.5 bits (519), Expect = 5.5e-49
Identity = 116/139 (83.45%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKK---------NPSPEIKKVKK 60
           MISN I +LNKKLQAVEISNR RRTKKTT Y YRDDLSKK          P PEIKKVKK
Sbjct: 1   MISNFILSLNKKLQAVEISNRCRRTKKTT-YVYRDDLSKKKQSPPPSSSQPQPEIKKVKK 60

Query: 61  RVRFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDV 120
           RVRFADTEPVIIAITD EER  EEETEKKVVRITVKLTK+EANRMLSRCSDGGVL+FGDV
Sbjct: 61  RVRFADTEPVIIAITDKEERSTEEETEKKVVRITVKLTKEEANRMLSRCSDGGVLEFGDV 120

Query: 121 ACELMRIPATRVSSSMLAN 131
           ACELMRIPATRVSSSM+AN
Sbjct: 121 ACELMRIPATRVSSSMVAN 138

[Close]

BLAST of Clc07G11280 vs. NCBI nr
Match: XP_022931429.1 (uncharacterized protein LOC111437608 [Cucurbita moschata])

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-42
Identity = 111/134 (82.84%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKN----PS---PEIKKVKKRV 60
           MI NLIS+LNKKLQAVEISNR RRTKKTTN  YR D+SKK     PS   PEI+KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN-VYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60

Query: 61  RFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVAC 120
           RFADTEPVIIAI D EER  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVL+FGDVA 
Sbjct: 61  RFADTEPVIIAI-DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVAS 120

Query: 121 ELMRIPATRVSSSM 128
           ELMRIPA RVSSSM
Sbjct: 121 ELMRIPAARVSSSM 132

[Close]

BLAST of Clc07G11280 vs. NCBI nr
Match: KAG7015140.1 (hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-42
Identity = 111/137 (81.02%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKN----PS---PEIKKVKKRV 60
           MI NLIS+LNKKLQAVEISNR RRTKKTTN  YR D+SKK     PS   PEI+KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN-VYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60

Query: 61  RFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVAC 120
           RFADTEPVIIAI D EER  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVL+F DVA 
Sbjct: 61  RFADTEPVIIAI-DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVAS 120

Query: 121 ELMRIPATRVSSSMLAN 131
           ELMRIPA RVSSSM+ N
Sbjct: 121 ELMRIPAARVSSSMVVN 135

[Close]

BLAST of Clc07G11280 vs. NCBI nr
Match: KAG6577140.1 (hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 109/137 (79.56%), Postives = 114/137 (83.21%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNP-------SPEIKKVKKRV 60
           MI NLIS+LNKKLQAVEISNR RRTKKTTN  YR D+SKK          PEI+KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN-VYRGDMSKKKQPQLPPQGKPEIEKVKKRV 60

Query: 61  RFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVAC 120
           RFADTEPVIIAI D EER  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVL+F DVA 
Sbjct: 61  RFADTEPVIIAI-DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFRDVAS 120

Query: 121 ELMRIPATRVSSSMLAN 131
           ELMRIPA RVSSSM+ N
Sbjct: 121 ELMRIPAARVSSSMVVN 135

[Close]

BLAST of Clc07G11280 vs. NCBI nr
Match: XP_022985430.1 (uncharacterized protein LOC111483436 [Cucurbita maxima])

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 111/136 (81.62%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKK------NPS---PEIKKVKK 60
           MI NLIS+LNKKLQAVEISNR RRTKKTTN  YR D+SKK      +PS   PEI+KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN-VYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60

Query: 61  RVRFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDV 120
           RVRFADTEPVIIAI D EER  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVL+FGDV
Sbjct: 61  RVRFADTEPVIIAI-DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDV 120

Query: 121 ACELMRIPATRVSSSM 128
           A ELMRIPA RVSSSM
Sbjct: 121 ASELMRIPAARVSSSM 134

[Close]

BLAST of Clc07G11280 vs. ExPASy TrEMBL
Match: A0A6J1EU86 (uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC111437608 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.8e-43
Identity = 111/134 (82.84%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKN----PS---PEIKKVKKRV 60
           MI NLIS+LNKKLQAVEISNR RRTKKTTN  YR D+SKK     PS   PEI+KVKKRV
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN-VYRGDMSKKKQPQLPSQGKPEIEKVKKRV 60

Query: 61  RFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDVAC 120
           RFADTEPVIIAI D EER  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVL+FGDVA 
Sbjct: 61  RFADTEPVIIAI-DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDVAS 120

Query: 121 ELMRIPATRVSSSM 128
           ELMRIPA RVSSSM
Sbjct: 121 ELMRIPAARVSSSM 132

[Close]

BLAST of Clc07G11280 vs. ExPASy TrEMBL
Match: A0A6J1JBA8 (uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.2e-43
Identity = 111/136 (81.62%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKK------NPS---PEIKKVKK 60
           MI NLIS+LNKKLQAVEISNR RRTKKTTN  YR D+SKK      +PS   PEI+KVKK
Sbjct: 1   MIGNLISSLNKKLQAVEISNRCRRTKKTTN-VYRRDMSKKKQPQSPSPSQGKPEIEKVKK 60

Query: 61  RVRFADTEPVIIAITDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLDFGDV 120
           RVRFADTEPVIIAI D EER  EEETEKKVVRITVKLTKQEANRMLSRCSDGGVL+FGDV
Sbjct: 61  RVRFADTEPVIIAI-DREERSTEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLEFGDV 120

Query: 121 ACELMRIPATRVSSSM 128
           A ELMRIPA RVSSSM
Sbjct: 121 ASELMRIPAARVSSSM 134

[Close]

BLAST of Clc07G11280 vs. ExPASy TrEMBL
Match: A0A5D3D246 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003900 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSP------------EIKK 60
           MISNLIS+LNKKLQAVEISNR +RTKKTT Y YRDDL+KK  SP            EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTT-YVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFADTEPVIIAI-TDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLD 120
           VKKRVRFADTEPVIIAI TD EE  +EEETEKKVVRITVKLTKQEANRMLSRCS+ GVL+
Sbjct: 61  VKKRVRFADTEPVIIAISTDREE--EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLE 120

Query: 121 FGDVACELMRIPATRVSSSMLAN 131
           FGDVA EL+RIP TRVSSS++AN
Sbjct: 121 FGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Clc07G11280 vs. ExPASy TrEMBL
Match: A0A1S3BS40 (uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-42
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSP------------EIKK 60
           MISNLIS+LNKKLQAVEISNR +RTKKTT Y YRDDL+KK  SP            EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISNRCKRTKKTT-YVYRDDLTKKKHSPPLSSSSPQHQPAEIKK 60

Query: 61  VKKRVRFADTEPVIIAI-TDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLD 120
           VKKRVRFADTEPVIIAI TD EE  +EEETEKKVVRITVKLTKQEANRMLSRCS+ GVL+
Sbjct: 61  VKKRVRFADTEPVIIAISTDREE--EEEETEKKVVRITVKLTKQEANRMLSRCSNDGVLE 120

Query: 121 FGDVACELMRIPATRVSSSMLAN 131
           FGDVA EL+RIP TRVSSS++AN
Sbjct: 121 FGDVASELLRIPPTRVSSSLVAN 140

[Close]

BLAST of Clc07G11280 vs. ExPASy TrEMBL
Match: A0A0A0KYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 7.0e-42
Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 1   MISNLISTLNKKLQAVEISNRGRRTKKTTNYAYRDDLSKKNPSP------------EIKK 60
           MISNLIS+LNKKLQAVEIS+R +RTKKT  Y YRD+L+KKN SP            EIKK
Sbjct: 1   MISNLISSLNKKLQAVEISSRCKRTKKTA-YVYRDNLTKKNHSPPSSSSSPQHQPEEIKK 60

Query: 61  VKKRVRFADTEPVIIAI-TDTEERIKEEETEKKVVRITVKLTKQEANRMLSRCSDGGVLD 120
           VKKRVRFADTEPVIIAI TD EE   E ETEKKVVRITVKLTKQEANRMLSRCS+GGVL+
Sbjct: 61  VKKRVRFADTEPVIIAISTDREEEELEVETEKKVVRITVKLTKQEANRMLSRCSNGGVLE 120

Query: 121 FGDVACELMRIPATRVSSSMLAN 131
           FGDVA ELMRIP TRV SS++AN
Sbjct: 121 FGDVASELMRIPPTRVRSSLVAN 142

The following BLAST results are available for this feature:

BLAST of Clc07G11280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906331.1	5.5e-49	83.45	uncharacterized protein LOC120092170 [Benincasa hispida]	[more]
XP_022931429.1	1.0e-42	82.84	uncharacterized protein LOC111437608 [Cucurbita moschata]	[more]
KAG7015140.1	1.3e-42	81.02	hypothetical protein SDJN02_22773, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577140.1	1.7e-42	79.56	hypothetical protein SDJN03_24714, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022985430.1	1.7e-42	81.62	uncharacterized protein LOC111483436 [Cucurbita maxima]	[more]

BLAST of Clc07G11280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc07G11280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EU86	4.8e-43	82.84	uncharacterized protein LOC111437608 OS=Cucurbita moschata OX=3662 GN=LOC1114376...	[more]
A0A6J1JBA8	8.2e-43	81.62	uncharacterized protein LOC111483436 OS=Cucurbita maxima OX=3661 GN=LOC111483436...	[more]
A0A5D3D246	1.8e-42	76.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BS40	1.8e-42	76.92	uncharacterized protein LOC103493098 OS=Cucumis melo OX=3656 GN=LOC103493098 PE=...	[more]
A0A0A0KYE1	7.0e-42	75.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052080 PE=4 SV=1	[more]

BLAST of Clc07G11280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36782:SF1	BNAC03G62080D PROTEIN	coord: 1..128
None	No IPR available	PANTHER	PTHR36782	BNAC03G62080D PROTEIN	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G11280.1	Clc07G11280.1	mRNA