Clc07G11270 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G11270
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	ClcChr07: 25921364 .. 25922816 (+)
RNA-Seq Expression	Clc07G11270
Synteny	Clc07G11270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAACCCAAAGCCACTTGTGGGGTTAGATAGTCTCACACTCATCGACTCCATCTCTGTAATCAGCAGAGAGCATGGCTTCCTCCATCTCCCTTCCATCTCCCCAAACTCCGCTTCTCAAATCCACCTTCCTCCGTCGAAACCGCCACTGCCAATTCCCCCTTCCACGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCGCCTTCGATCTGGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTCTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGATGGAGGTGAAATTCCACAAACCTCCGAGAAATTAGCCGTCGATACGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGCTTAACGGGTGGATTTCCTGGCGGAGAAAAGGGATTGAGAAAATTCATATCGGAAAATCCTCCTCCTCCTCCTCCGAAGCCTTCCGGTTCAAATTCCGGCGAAACCAGCGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCAGATCTTCCGCTGCTGCTGCCGGGAATGATCGCGATCGTTAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTCGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGATTCCGATCGGCGGTGGTGATTTCTTTCTCTTCTTTCCTTTAGTTATCTGTTTGTTATCCTGAAAATTCGACTTGGAAAAATGTGTGAATATTCCCAATCCAACCCAACAAACAGCTTCTACTTTAACGAGTTATCATTAGAGAATTTTTCTAAAGGTTAATTACAAGTTTAATCCTAATTTTGTGACTAACACAACATGTATTCAAAATTTAAGAGATTCAATCAAACCTTTTTTTTTTCTATGTTAGTAAAATCAACCTAATTATTCAATATATTTTAATTATCTTAATTATTCAAAGAAAACATGAATCAAGAGGAAAATTTATGAGGGGAATAAGTAGAAAGAATTTTAATTTTGGAGCCATACTTGGGGGTAATTTGGCTTACTAAGTCTATATTGTCTTTTTCTTTTTTAGAAAACAATTTTAATATATATATTTAAAAAAAATGTAATTATCACATGTCAATTAAATTTTTCTTTAGGTGCAATTGAGTTATCTAATAAATGGTTGAAGCCCGACTCGCACCAAGTTTTTCCCTTATTTTTGCACATGTGGTGCTATACTGCCATTCCATAATTTTGTCGGTAAGTTAACATTTTTTTTAACAATAGGACTAAATTGTTATTAATTAAAAAATTCGGAGAGTAAATCGTTATTTAGATTTA

mRNA sequence

AAAAAAAAAAAAACCCAAAGCCACTTGTGGGGTTAGATAGTCTCACACTCATCGACTCCATCTCTGTAATCAGCAGAGAGCATGGCTTCCTCCATCTCCCTTCCATCTCCCCAAACTCCGCTTCTCAAATCCACCTTCCTCCGTCGAAACCGCCACTGCCAATTCCCCCTTCCACGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCGCCTTCGATCTGGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTCTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGATGGAGGTGAAATTCCACAAACCTCCGAGAAATTAGCCGTCGATACGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGCTTAACGGGTGGATTTCCTGGCGGAGAAAAGGGATTGAGAAAATTCATATCGGAAAATCCTCCTCCTCCTCCTCCGAAGCCTTCCGGTTCAAATTCCGGCGAAACCAGCGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCAGATCTTCCGCTGCTGCTGCCGGGAATGATCGCGATCGTTAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTCGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGATTCCGATCGGCGGTGGTGATTTCTTTCTCTTCTTTCCTTTAGTTATCTGTTTGTTATCCTGAAAATTCGACTTGGAAAAATGTGTGAATATTCCCAATCCAACCCAACAAACAGCTTCTACTTTAACGAGTTATCATTAGAGAATTTTTCTAAAGGTTAATTACAAGTTTAATCCTAATTTTGTGACTAACACAACATGTATTCAAAATTTAAGAGATTCAATCAAACCTTTTTTTTTTCTATGTTAGTAAAATCAACCTAATTATTCAATATATTTTAATTATCTTAATTATTCAAAGAAAACATGAATCAAGAGGAAAATTTATGAGGGGAATAAGTAGAAAGAATTTTAATTTTGGAGCCATACTTGGGGGTAATTTGGCTTACTAAGTCTATATTGTCTTTTTCTTTTTTAGAAAACAATTTTAATATATATATTTAAAAAAAATGTAATTATCACATGTCAATTAAATTTTTCTTTAGGTGCAATTGAGTTATCTAATAAATGGTTGAAGCCCGACTCGCACCAAGTTTTTCCCTTATTTTTGCACATGTGGTGCTATACTGCCATTCCATAATTTTGTCGGTAAGTTAACATTTTTTTTAACAATAGGACTAAATTGTTATTAATTAAAAAATTCGGAGAGTAAATCGTTATTTAGATTTA

Coding sequence (CDS)

ATGGCTTCCTCCATCTCCCTTCCATCTCCCCAAACTCCGCTTCTCAAATCCACCTTCCTCCGTCGAAACCGCCACTGCCAATTCCCCCTTCCACGTCGCGCATCACCAAGCCATCACACTTTCCGGCCCTCCGCCGCCTTCGATCTGGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCGAGGTCTGAAAGAGGAACTCAAGAGAAACGTCCAGGAGATTCCCGCAGATGGAGGTGAAATTCCACAAACCTCCGAGAAATTAGCCGTCGATACGGTTCCGGAAGATGGATTCGAGAAGGAATTGATGGGCTTAACGGGTGGATTTCCTGGCGGAGAAAAGGGATTGAGAAAATTCATATCGGAAAATCCTCCTCCTCCTCCTCCGAAGCCTTCCGGTTCAAATTCCGGCGAAACCAGCGCGATTCTGAGTTCGCAGAAACCAAAGCCGCCAGATCTTCCGCTGCTGCTGCCGGGAATGATCGCGATCGTTAAGAATCCGAACAATCCGTACTACATGTATTGTGGAATCGTTCAGAGAATCACAGATGGAAAGGCTGGGGTTCTTTTCGAAGGAGGAAACTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCTCCGATGAAGAACCCTAGATCGGCTGTTCTTGAACCGCTTCTTCAAAATGATTCCCAATGA

Protein sequence

MASSISLPSPQTPLLKSTFLRRNRHCQFPLPRRASPSHHTFRPSAAFDLAQLLGGRGLCNGERGLKEELKRNVQEIPADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGGEKGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ

Homology

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BLAST of Clc07G11270 vs. NCBI nr
Match: XP_038902579.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902587.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902595.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902601.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902605.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida])

HSP 1 Score: 426.4 bits (1095), Expect = 1.6e-115
Identity = 217/241 (90.04%), Postives = 223/241 (92.53%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRRNR-----HCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLP+PQTPLLKSTFL +NR     H  FPLP RASP+HH FRPSAAFDLAQLLGG
Sbjct: 1   MASSISLPTPQTPLLKSTFLGQNRRRFLLHRPFPLPHRASPTHHAFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIP-ADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGG 120
           RGLCNGERGLKEELKRNV++ P ADGGEIP+TSEKLAVD VPEDGFEKELMGLTGGFPGG
Sbjct: 61  RGLCNGERGLKEELKRNVEDNPVADGGEIPETSEKLAVDRVPEDGFEKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPP-PKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPY 180
           EKGLRKFISENPPPPP PKPS SNS E  AILSSQKPKPPDLPLLLPGMIAIVKNPNNPY
Sbjct: 121 EKGLRKFISENPPPPPRPKPSASNSSEIGAILSSQKPKPPDLPLLLPGMIAIVKNPNNPY 180

Query: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDS 235
           YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDS
Sbjct: 181 YMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDS 240

[Close]

BLAST of Clc07G11270 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 409.8 bits (1052), Expect = 1.5e-110
Identity = 209/239 (87.45%), Postives = 217/239 (90.79%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRR-----NRHCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLPSPQ+PLLKSTFL R     + H QFPLPRRASPSHHTFRPSAAFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGGE 120
           RGLCNGE+GLKEELKRNV E    G EIP+T+EKLAVD VPEDGF+KELMGLTGGFPGGE
Sbjct: 61  RGLCNGEKGLKEELKRNVVE-ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYM 180
           KGLRKFI+ENPPPPPPKPS S S E  AI SSQKPKPPDLPLLLPGMIAIVKNPN+PYYM
Sbjct: 121 KGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ 235
           YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ DSQ
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Clc07G11270 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 409.1 bits (1050), Expect = 2.6e-110
Identity = 209/239 (87.45%), Postives = 217/239 (90.79%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFL-----RRNRHCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLPSPQ+PLLKSTFL     R + H QFPLPRRASPSHHTFRPSA+FDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLPRRASPSHHTFRPSASFDLAQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGGE 120
           RGLCNGE+GLKEELKRNV E    G EIP+T+EKLAVD VPEDGF+KELMGLTGGFPGGE
Sbjct: 61  RGLCNGEKGLKEELKRNVVE-ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYM 180
           KGLRKFISENPPPPPPKPS S S E  AI SSQKPKPPDLPLLLPGMIAIVKNPN+PYYM
Sbjct: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ 235
           YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ DSQ
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Clc07G11270 vs. NCBI nr
Match: KAG6600515.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 408.3 bits (1048), Expect = 4.5e-110
Identity = 209/239 (87.45%), Postives = 216/239 (90.38%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRR-----NRHCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLPSPQ+PLLKSTFL R     + H QFPLPRRA PSHHTFRPSAAFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGGE 120
           RGLCNGE+GLKEELKRNV E    G EIP+T+EKLAVD VPEDGF+KELMGLTGGFPGGE
Sbjct: 61  RGLCNGEKGLKEELKRNVVE-ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYM 180
           KGLRKFISENPPPPPPKPS S S E  AI SSQKPKPPDLPLLLPGMIAIVKNPN+PYYM
Sbjct: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ 235
           YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ DSQ
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Clc07G11270 vs. NCBI nr
Match: KAG7031154.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 405.2 bits (1040), Expect = 3.8e-109
Identity = 208/239 (87.03%), Postives = 215/239 (89.96%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRR-----NRHCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLPSPQ+PLLKSTFL R     + H QFPLPRRA PSH TFRPSAAFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHQTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGGE 120
           RGLCNGE+GLKEELKRNV E    G EIP+T+EKLAVD VPEDGF+KELMGLTGGFPGGE
Sbjct: 61  RGLCNGEKGLKEELKRNVVE-ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYM 180
           KGLRKFISENPPPPPPKPS S S E  AI SSQKPKPPDLPLLLPGMIAIVKNPN+PYYM
Sbjct: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ 235
           YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ DSQ
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Clc07G11270 vs. ExPASy Swiss-Prot
Match: Q9T0A4 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.3e-72
Identity = 137/239 (57.32%), Postives = 178/239 (74.48%), Query Frame = 0


Query: 3   SSISLPSPQTPLLKSTFLRRNRHCQ------FPLPRRASPSHHTFRPSAAFDLAQLLGGR 62
           SSI++P+ +TP+ +S FL +           FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLKEELKRNVQE----IPADGGEIPQTSEKLAVD-TVPEDGFEKELMGLTGGF 122
           GLCNGE+G+++EL+RN+++      A+  E  + S+   +   VPEDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 182
           PGGEKGL+ FI +NPPPPPP P      + SA+ + +KPK P LPLL+PGMIAIVKN N+
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNS 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 231
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

[Close]

BLAST of Clc07G11270 vs. ExPASy TrEMBL
Match: A0A6J1IWU0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481312 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 7.5e-111
Identity = 209/239 (87.45%), Postives = 217/239 (90.79%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRR-----NRHCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLPSPQ+PLLKSTFL R     + H QFPLPRRASPSHHTFRPSAAFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGGE 120
           RGLCNGE+GLKEELKRNV E    G EIP+T+EKLAVD VPEDGF+KELMGLTGGFPGGE
Sbjct: 61  RGLCNGEKGLKEELKRNVVE-ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYM 180
           KGLRKFI+ENPPPPPPKPS S S E  AI SSQKPKPPDLPLLLPGMIAIVKNPN+PYYM
Sbjct: 121 KGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ 235
           YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ DSQ
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Clc07G11270 vs. ExPASy TrEMBL
Match: A0A6J1FWM0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448039 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 7.0e-109
Identity = 207/239 (86.61%), Postives = 214/239 (89.54%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRR-----NRHCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLPSPQ+PLLKSTFL R     + H QFPLPRRA PSHHT RPSAAFDLAQLLGG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLPRRALPSHHTSRPSAAFDLAQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGGE 120
           RGLCNGE+GL EELKRNV E    G EIP+T+EKLAVD VPEDGF+KELMGLTGGFPGGE
Sbjct: 61  RGLCNGEKGLNEELKRNVVE-ETIGAEIPETTEKLAVDKVPEDGFDKELMGLTGGFPGGE 120

Query: 121 KGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNPYYM 180
           KGLRKFISENPPPPPPKPS S S E  AI SSQKPKPPDLPLLLPGMIAIVKNPN+PYYM
Sbjct: 121 KGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSPYYM 180

Query: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQNDSQ 235
           YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ DSQ
Sbjct: 181 YCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKDSQ 238

[Close]

BLAST of Clc07G11270 vs. ExPASy TrEMBL
Match: A0A5D3CYY1 (NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003910 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.7e-105
Identity = 201/242 (83.06%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRRNR-----HCQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60
           MASSISLPSPQTPLLKS+FL +NR     H  FPLP R AS +HH FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGLKEELKRNVQEIP--ADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFP 120
           GRGLCNGERG++EELKRNV + P  ADG EIP+TS KL VD+VPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           GGEKGL+KFISEN  PPP KPS S SGE  +IL+++KPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 GGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQND 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQ D
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

[Close]

BLAST of Clc07G11270 vs. ExPASy TrEMBL
Match: A0A1S3BSR5 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.7e-105
Identity = 201/242 (83.06%), Postives = 214/242 (88.43%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRRNR-----HCQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60
           MASSISLPSPQTPLLKS+FL +NR     H  FPLP R AS +HH FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 61  GRGLCNGERGLKEELKRNVQEIP--ADGGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFP 120
           GRGLCNGERG++EELKRNV + P  ADG EIP+TS KL VD+VPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 121 GGEKGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNNP 180
           GGEKGL+KFISEN  PPP KPS S SGE  +IL+++KPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 GGEKGLKKFISEN--PPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQND 235
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEP LQ D
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKD 240

[Close]

BLAST of Clc07G11270 vs. ExPASy TrEMBL
Match: A0A6J1C3K2 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008167 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.8e-102
Identity = 199/243 (81.89%), Postives = 209/243 (86.01%), Query Frame = 0


Query: 1   MASSISLPSPQTPLLKSTFLRRNR-----HCQFPLPRRASPSHHTFRPSAAFDLAQLLGG 60
           MASSISLP   TP LKSTFL +NR     H +FPLP+RAS SH  FRP+A FDL QLLGG
Sbjct: 1   MASSISLP---TPHLKSTFLGQNRRRFLPHRRFPLPQRASSSHRVFRPAAEFDLGQLLGG 60

Query: 61  RGLCNGERGLKEELKRNVQEIPAD-GGEIPQTSEKLAVDTVPEDGFEKELMGLTGGFPGG 120
           RGLCNGERGL+EELKR+V EIPA+ GGEIP+  EK A   V EDGFEKELMGLTGGFPGG
Sbjct: 61  RGLCNGERGLREELKRDVAEIPAEIGGEIPEIPEKSAAAGVSEDGFEKELMGLTGGFPGG 120

Query: 121 EKGLRKFISENPPPPP---PKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 180
           EKGLRKFISENPPPPP    KP  SNSGE  AI+SSQKPKPPDLPLLLPGMIAIVKNPNN
Sbjct: 121 EKGLRKFISENPPPPPTPKAKPPASNSGEIGAIMSSQKPKPPDLPLLLPGMIAIVKNPNN 180

Query: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQN 235
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRL+ELERREKGPPMKNPRSAVLEPLLQ 
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLDELERREKGPPMKNPRSAVLEPLLQK 240

[Close]

BLAST of Clc07G11270 vs. TAIR 10
Match: AT4G23890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). )

HSP 1 Score: 274.2 bits (700), Expect = 9.4e-74
Identity = 137/239 (57.32%), Postives = 178/239 (74.48%), Query Frame = 0


Query: 3   SSISLPSPQTPLLKSTFLRRNRHCQ------FPLPRRASPSHHTFRPSAAFDLAQLLGGR 62
           SSI++P+ +TP+ +S FL +           FP P++ S  +   +    F+L +++GGR
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQQSKLYQV-KAMGKFNLWEVMGGR 63

Query: 63  GLCNGERGLKEELKRNVQE----IPADGGEIPQTSEKLAVD-TVPEDGFEKELMGLTGGF 122
           GLCNGE+G+++EL+RN+++      A+  E  + S+   +   VPEDGFEKE+MGLTGGF
Sbjct: 64  GLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGGF 123

Query: 123 PGGEKGLRKFISENPPPPPPKPSGSNSGETSAILSSQKPKPPDLPLLLPGMIAIVKNPNN 182
           PGGEKGL+ FI +NPPPPPP P      + SA+ + +KPK P LPLL+PGMIAIVKN N+
Sbjct: 124 PGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQNS 183

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQ 231
           PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNP+S +LEPL++
Sbjct: 184 PYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 241

The following BLAST results are available for this feature:

BLAST of Clc07G11270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902579.1	1.6e-115	90.04	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_...	[more]
XP_022982522.1	1.5e-110	87.45	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima]	[more]
XP_023553886.1	2.6e-110	87.45	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p...	[more]
KAG6600515.1	4.5e-110	87.45	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argy...	[more]
KAG7031154.1	3.8e-109	87.03	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Clc07G11270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0A4	1.3e-72	57.32	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of Clc07G11270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IWU0	7.5e-111	87.45	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1FWM0	7.0e-109	86.61	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A5D3CYY1	4.7e-105	83.06	NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BSR5	4.7e-105	83.06	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6J1C3K2	4.8e-102	81.89	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Momordica charantia O...	[more]

BLAST of Clc07G11270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23890.1	9.4e-74	57.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	NADH dehydrogenase-like complex, subunit S	PFAM	PF11623	NdhS	coord: 158..209 e-value: 8.7E-29 score: 98.9
IPR021659	NADH dehydrogenase-like complex, subunit S	PANTHER	PTHR35494	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 1..232
None	No IPR available	GENE3D	2.30.30.140		coord: 153..222 e-value: 6.0E-33 score: 114.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..234
None	No IPR available	PANTHER	PTHR35494:SF1	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 1..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G11270.1	Clc07G11270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)