Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCATTAATCCTTCACGTTTCGACTTGGATACTTGCAGCACTTGGAGTGACTACTGCATAAGAAGGTGTTTGGGTGTGCACTGAATCAAAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATATTAGGTCAGTCGGGATTCGGCTGGAACGTGGAGTTCAAATGTGTCCAGGTTGAGAGGGAGATTTTCGATCTTTGGGTTTGGGTAAGATTCTAAAAAAAAAAAAAAAAATTTACTCGTACGTGTTTAAAATGTAAATATTAATAATGTGTACGTGTATTAATGTAGAGTCATCCCAGTGTGAAGAGGATGTGGAACAAACCGTTTCCCCATTACGATGACCTCTCCACCGTCTTTGATAAAGATAGAGCTATCGGACAATCAAGTGAGGACCCACACGTGATGGCGAGTAATGCATTCAGAGAGTTTGAAGATGAGATTCGACTTGGATCGTAGAACTGTCACACACCTAATGTTCGCCAGTCAGATTCACCATTAAATCCGGATGGAATGATGAAGAGACAACAGAGCAATCTACAGGTAGAGCGACACTTATCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCAACATCATGAGATCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCGTGGCAGAAGGAGAAGTATGAGCTAGAGTTCAGTTGTCGGAAAGAAGTAGTAAACGCCATATACAGCATTGACGGCTTGAATGAGGATGACTAG
mRNA sequence
ATGCTCATTAATCCTTCACGTTTCGACTTGGATACTTGCAGCACTTGGAGTGACTACTGCATAAGAAGGTGTTTGGTATCAGAGATATTAGGTCAGTCGGGATTCGGCTGGAACGTGGAGTTCAAATGTGTCCAGGTTGAGAGGGAGATTTTCGATCTTTGGGTTTGGAGTCATCCCAGTGTGAAGAGGATGTGGAACAAACCGTTTCCCCATTACGATGACCTCTCCACCGTCTTTGATAAAGATAGAGCTATCGGACAATCAATCAGATTCACCATTAAATCCGGATGGAATGATGAAGAGACAACAGAGCAATCTACAGGTAGAGCGACACTTATCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCAACATCATGAGATCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCGTGGCAGAAGGAGAAGTATGAGCTAGAGTTCAGTTGTCGGAAAGAAGTAGTAAACGCCATATACAGCATTGACGGCTTGAATGAGGATGACTAG
Coding sequence (CDS)
ATGCTCATTAATCCTTCACGTTTCGACTTGGATACTTGCAGCACTTGGAGTGACTACTGCATAAGAAGGTGTTTGGTATCAGAGATATTAGGTCAGTCGGGATTCGGCTGGAACGTGGAGTTCAAATGTGTCCAGGTTGAGAGGGAGATTTTCGATCTTTGGGTTTGGAGTCATCCCAGTGTGAAGAGGATGTGGAACAAACCGTTTCCCCATTACGATGACCTCTCCACCGTCTTTGATAAAGATAGAGCTATCGGACAATCAATCAGATTCACCATTAAATCCGGATGGAATGATGAAGAGACAACAGAGCAATCTACAGGTAGAGCGACACTTATCGAGTCATCTCGAGGAAGCAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCAACATCATGAGATCGACTGTTGAGATGCAGAACACGCACATGGGTAGACTTGCATCGTGGCAGAAGGAGAAGTATGAGCTAGAGTTCAGTTGTCGGAAAGAAGTAGTAAACGCCATATACAGCATTGACGGCTTGAATGAGGATGACTAG
Protein sequence
MLINPSRFDLDTCSTWSDYCIRRCLVSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSIRFTIKSGWNDEETTEQSTGRATLIESSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD
Homology
BLAST of Clc07G09370 vs. NCBI nr
Match:
XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])
HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 120/161 (74.53%), Postives = 129/161 (80.12%), Query Frame = 0
Query: 26 VSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAI 85
VSE+L QSGFGWN EFKCVQVE+EIFDLWV SH + K MWNK F HYDDLSTVF KDRA
Sbjct: 79 VSEMLSQSGFGWNEEFKCVQVEKEIFDLWVRSHLNAKGMWNKSFLHYDDLSTVFGKDRAN 138
Query: 86 GQS-----IRFTIKSGWNDEETTEQSTGRAT-LIESSRGSKRKRPSFQAEMINIMRSTVE 145
+ + DEE EQSTGRA+ L ESSRGSKRKRPSFQAEMI+IMRSTVE
Sbjct: 139 CHTPEVCQAESPLNQDEIDEEPAEQSTGRASVLAESSRGSKRKRPSFQAEMIDIMRSTVE 198
Query: 146 MQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
MQ+THMGRLASWQKEKYELEF RKEVVNAIYSIDGL+EDD
Sbjct: 199 MQSTHMGRLASWQKEKYELEFGRRKEVVNAIYSIDGLDEDD 239
BLAST of Clc07G09370 vs. NCBI nr
Match:
XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])
HSP 1 Score: 221.9 bits (564), Expect = 4.6e-54
Identity = 118/194 (60.82%), Postives = 137/194 (70.62%), Query Frame = 0
Query: 7 RFDLDTCSTWSDYCIRRC--------------------LVSEILGQSGFGWNVEFKCVQV 66
RFD DT +T S++C+ +C +SE+L QSGF WN EFKCVQV
Sbjct: 27 RFDQDTYNTLSEFCMIKCPALNQNTIECKVRSLKKQYNAISEMLSQSGFDWNEEFKCVQV 86
Query: 67 EREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSIRFTIKSGWNDEETTEQS 126
EREIF+LWV SHP+ K MWNKPFPHYDDLST D I + DEE TEQS
Sbjct: 87 EREIFNLWVRSHPNAKGMWNKPFPHYDDLST--DCHTPEVCQIESLLNQDEIDEEPTEQS 146
Query: 127 TGRATL-IESSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKE 180
TGR ++ +ESSRGSKRKR SFQ EMI+IMRSTVEM +THMGRLASWQK+KYELEF +KE
Sbjct: 147 TGRTSIPVESSRGSKRKRSSFQVEMIDIMRSTVEMHSTHMGRLASWQKKKYELEFGRQKE 206
BLAST of Clc07G09370 vs. NCBI nr
Match:
XP_038899910.1 (uncharacterized protein LOC120087100 [Benincasa hispida])
HSP 1 Score: 209.5 bits (532), Expect = 2.3e-50
Identity = 116/186 (62.37%), Postives = 131/186 (70.43%), Query Frame = 0
Query: 29 ILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQS 88
+L QSGFGWN EFKCVQVE+EIF+ SHP+ K MWNK FPHYDDLSTVF KDRA+GQS
Sbjct: 1 MLSQSGFGWNEEFKCVQVEKEIFNR---SHPNAKGMWNKSFPHYDDLSTVFGKDRAVGQS 60
Query: 89 ------------------------------IRFT---IKSGWNDEETTEQSTGRATL-IE 148
+R T + DEE EQSTGRA++ +E
Sbjct: 61 SEDPYVMAKNAFREFEDEIRLGSQDCRTAEVRQTESPLNQDEIDEEPAEQSTGRASVPVE 120
Query: 149 SSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSID 181
+S+GSKRKRPSFQAEMI+IMRSTVEMQ+THMGRLASWQKEKYELEF KEVVNAIYSID
Sbjct: 121 TSQGSKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASWQKEKYELEFEHWKEVVNAIYSID 180
BLAST of Clc07G09370 vs. NCBI nr
Match:
XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])
HSP 1 Score: 208.8 bits (530), Expect = 4.0e-50
Identity = 112/161 (69.57%), Postives = 125/161 (77.64%), Query Frame = 0
Query: 26 VSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAI 85
VSE+L QSGF WN EFKCVQVEREIFDLWV SHP+ K MW KPFPHYDDLS VF KDRA
Sbjct: 79 VSEMLSQSGFNWNEEFKCVQVEREIFDLWVRSHPNAKGMWKKPFPHYDDLSAVFGKDRAD 138
Query: 86 GQS--IRFT---IKSGWNDEETTEQSTGRATL-IESSRGSKRKRPSFQAEMINIMRSTVE 145
+ +R T + DEE EQSTGRA++ ESSRGSKRKR SFQ EMI+I++STVE
Sbjct: 139 CHTPEVRQTESPLNQDEIDEEPAEQSTGRASVPTESSRGSKRKRSSFQVEMIDIVKSTVE 198
Query: 146 MQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
MQ+THMGRLASWQ EKYELE KEVVNAIY+ID L E+D
Sbjct: 199 MQSTHMGRLASWQNEKYELEL---KEVVNAIYNIDDLEEND 236
BLAST of Clc07G09370 vs. NCBI nr
Match:
XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])
HSP 1 Score: 164.1 bits (414), Expect = 1.1e-36
Identity = 88/155 (56.77%), Postives = 101/155 (65.16%), Query Frame = 0
Query: 26 VSEILGQSGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAI 85
VSE+L QSGF WN EFKCVQVEREIFD WV SHP+ K MWNKPFPHYDDLSTVF K +A+
Sbjct: 117 VSEMLSQSGFDWNEEFKCVQVEREIFDPWVRSHPNAKGMWNKPFPHYDDLSTVFGKYKAV 176
Query: 86 GQSIRFTIKSGWNDEETTEQSTGRATLIESSRGSKRKRPSFQAEMINIMRSTVEMQNTHM 145
GQS E+ +T F+ E+ + ++THM
Sbjct: 177 GQS----------SEDPYVMTTNAFR-------------EFEDEIRLGSQDCHTPESTHM 236
Query: 146 GRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
GRLASWQKEKYELEF RKEVVNAIY+IDGL+EDD
Sbjct: 237 GRLASWQKEKYELEFGRRKEVVNAIYNIDGLDEDD 248
BLAST of Clc07G09370 vs. ExPASy TrEMBL
Match:
A0A6J1DW73 (uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025018 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 3.2e-21
Identity = 60/178 (33.71%), Postives = 92/178 (51.69%), Query Frame = 0
Query: 34 GFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSI---- 93
GFGWN + KC++ E+E+FD WV SHP+ K + NKP PHYDDL+ F KDRA G ++
Sbjct: 4 GFGWNDDHKCIEAEKEVFDDWVKSHPNAKGLRNKP-PHYDDLTVAFGKDRATGANLDCPV 63
Query: 94 ---------------------------RFTIKSGWNDEETTEQSTGRATLIESSRGSKRK 153
F +E+ T + T+ SS GSKRK
Sbjct: 64 DMASSAAATIAEDAHFEAQDFYIPDPPMFNTTEDAIEEDLPNTPTSKPTIGTSSGGSKRK 123
Query: 154 RPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
R + +EM++++R+ + MQ H+ ++A+W +K E + + RK V + + I L +D
Sbjct: 124 RSGYTSEMVDVVRTNMRMQTAHLEKMATWPDKKEEKKIARRKIVHDQLKQIPNLEAND 180
BLAST of Clc07G09370 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 64/179 (35.75%), Postives = 89/179 (49.72%), Query Frame = 0
Query: 33 SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIG------ 92
SGFGWN EF+C+ ER++FD W+ SHP+ K + +K FP+YDDLS VF KDRA G
Sbjct: 90 SGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF 149
Query: 93 QSIRFTIKSGWND----------EETTEQSTG-----------RATLIESSRG----SKR 152
++ + + +ND + T S G RA R SKR
Sbjct: 150 PNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKR 209
Query: 153 KRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
KR S + E + ++RS +E N + +A W KEK +E R +VV + I L D
Sbjct: 210 KRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQD 268
BLAST of Clc07G09370 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 103.6 bits (257), Expect = 8.8e-19
Identity = 64/179 (35.75%), Postives = 89/179 (49.72%), Query Frame = 0
Query: 33 SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIG------ 92
SGFGWN EF+C+ ER++FD W+ SHP+ K + +K FP+YDDLS VF KDRA G
Sbjct: 90 SGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETF 149
Query: 93 QSIRFTIKSGWND----------EETTEQSTG-----------RATLIESSRG----SKR 152
++ + + +ND + T S G RA R SKR
Sbjct: 150 PNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKR 209
Query: 153 KRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSIDGLNEDD 181
KR S + E + ++RS +E N + +A W KEK +E R +VV + I L D
Sbjct: 210 KRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQD 268
BLAST of Clc07G09370 vs. ExPASy TrEMBL
Match:
A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)
HSP 1 Score: 102.1 bits (253), Expect = 2.6e-18
Identity = 56/186 (30.11%), Postives = 97/186 (52.15%), Query Frame = 0
Query: 26 VSEILGQ--SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDR 85
++E++G SGFGWN KC++VE+ +FD WV HP+ + + NKPFP++ DL VF +DR
Sbjct: 189 IAEMMGPACSGFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDR 248
Query: 86 AIGQSIRFTIKSGWNDEETTEQSTGRATLIE----------------------------- 145
A G + ++ TE+ L +
Sbjct: 249 ATGGRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAG 308
Query: 146 SSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQKEKYELEFSCRKEVVNAIYSID 181
SSR SK++R S+ ++++ R+++ + +G++A+WQ+EK E+E S K + + +I
Sbjct: 309 SSRPSKKRR-SYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIP 368
BLAST of Clc07G09370 vs. ExPASy TrEMBL
Match:
A0A5D3CH30 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00140 PE=4 SV=1)
HSP 1 Score: 100.5 bits (249), Expect = 7.4e-18
Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = 0
Query: 33 SGFGWNVEFKCVQVEREIFDLWVWSHPSVKRMWNKPFPHYDDLSTVFDKDRAIGQSIRFT 92
SGFGWN E KC+ E+E+FD WSHP+VK + NK F HYD+LS VF KDRA G
Sbjct: 85 SGFGWNDEKKCIVAEKEVFD--DWSHPTVKGLLNKSFVHYDELSYVFGKDRATGGRAESF 144
Query: 93 IKSGWNDEETTEQSTGRATLIESSRGSKRKRPSFQAEMINIMRSTVEMQNTHMGRLASWQ 152
G ND T + + R + S GSKRKR + +I+R+ +E N + R+A W
Sbjct: 145 ADIGSNDPAGTARVSERRNV---SSGSKRKRTGHAIDSGDIVRTAIEYGNEQLHRIAEWL 204
Query: 153 KEKYELEFSCRKEVVNAIYSIDGL 177
+ + R+E+V + +I L
Sbjct: 205 ILQRQDATQTRQEIVRQLEAIPEL 223
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DW73 | 3.2e-21 | 33.71 | uncharacterized protein LOC111025018 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A5A7U0H7 | 8.8e-19 | 35.75 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 8.8e-19 | 35.75 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5D3C7T4 | 2.6e-18 | 30.11 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CH30 | 7.4e-18 | 40.28 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |