Clc07G06880 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G06880
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transcription factor UPBEAT1-like
Location	ClcChr07: 17556184 .. 17556513 (+)
RNA-Seq Expression	Clc07G06880
Synteny	Clc07G06880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGTTTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG

mRNA sequence

ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGTTTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG

Coding sequence (CDS)

ATGAGTTCGATTACGAAGAAACACAGAATACCATGGAAGCAATCAACCAGAAGAACGGTTTTGCGATCGAGGTACGGTTCTCGGATCCTCAGAGCTCGAAGAAACCACAAAAATGGCGGAAAAGCCTGCACTTCAGACGTATCGGCGAAGCTTGAGTCGCTCCAGAGCCTCATTCCAACTCGCAGTGAAGACGGAGGACATCGGAGAGCGGAGGAGTTGTTTCAACAGACGGCGGATTACATCGTGCTGTTGAAGAATCAGGTTTTCGTTCTACAGAGGCTGATCGAGTTTTACGGATCCGGTGATTTAGAAAATGCCGTATCATCGTAG

Protein sequence

MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS

Homology

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BLAST of Clc07G06880 vs. NCBI nr
Match: KAG6607102.1 (hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 82/99 (82.83%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 12  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRA 71
           WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+
Sbjct: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62

Query: 72  EELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
           EELFQ+TADYIVLLKNQVFVLQRLIEFYGS + ENAVS+
Sbjct: 63  EELFQETADYIVLLKNQVFVLQRLIEFYGSDERENAVSA 101

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BLAST of Clc07G06880 vs. NCBI nr
Match: TYK04615.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 2.9e-35
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS D ENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Clc07G06880 vs. NCBI nr
Match: KAA0056655.1 (transcription factor UPBEAT1-like [Cucumis melo var. makuwa])

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-34
Identity = 84/109 (77.06%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS D ENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Clc07G06880 vs. NCBI nr
Match: KAG7036793.1 (hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-30
Identity = 76/99 (76.77%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 12  WKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSE-DGGHRRA 71
           WKQSTRR VLRSRYGSRILRARR HKNGGKAC+SDVSA+LE+LQSLIPT++  +G HRR+
Sbjct: 3   WKQSTRRAVLRSRYGSRILRARRIHKNGGKACSSDVSARLEALQSLIPTQNNGEGHHRRS 62

Query: 72  EELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
           EELFQ+TADYI      VFVLQRLIEFYGS + ENAVS+
Sbjct: 63  EELFQETADYI------VFVLQRLIEFYGSDERENAVSA 95

[Close]

BLAST of Clc07G06880 vs. NCBI nr
Match: PON40768.1 (transcription factor UPBEAT-like protein [Parasponia andersonii])

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-15
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIP 60
           MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP
Sbjct: 1   MSSTTKDQ----KTNVRRTRRRGRKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIP 60

Query: 61  TRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVS 109
               +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  --GHEGEIVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Clc07G06880 vs. ExPASy TrEMBL
Match: A0A5D3BZU8 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold351G00200 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 85/109 (77.98%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MSSI KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSSIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS D ENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Clc07G06880 vs. ExPASy TrEMBL
Match: A0A5A7UT08 (Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001870 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.3e-35
Identity = 84/109 (77.06%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPT 60
           MS I KKHRIPWKQSTRRTVL SR     +R  RNH+NGG AC SD+SAKLESLQSLIP+
Sbjct: 1   MSPIGKKHRIPWKQSTRRTVLPSRK----VRGGRNHQNGGMACASDLSAKLESLQSLIPS 60

Query: 61  RSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVSS 110
           RS++ G RRAE+LF+QTADYIVLLK+QVFVLQRLIEFYGS D ENAVSS
Sbjct: 61  RSDEEGVRRAEDLFKQTADYIVLLKSQVFVLQRLIEFYGSDDRENAVSS 105

[Close]

BLAST of Clc07G06880 vs. ExPASy TrEMBL
Match: A0A2P5AW87 (Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_294590 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.7e-15
Identity = 59/109 (54.13%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIP 60
           MSS TK      K + RRT  R R   SR   ARR+  NGG  C+S VS KLE+L+ LIP
Sbjct: 1   MSSTTKDQ----KTNVRRTRRRGRKTRSRDCVARRSCNNGGGTCSSKVSGKLEALKKLIP 60

Query: 61  TRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVS 109
               +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  --GHEGEIVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Clc07G06880 vs. ExPASy TrEMBL
Match: A0A2P5ED64 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_207440 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 58/109 (53.21%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQSTRRTVLRSR-YGSRILRARRNHKNGGKACTSDVSAKLESLQSLIP 60
           MSS TK  +I    + RRT  R R   SR   A R+  NGG  C+S VS KLE+L+ LIP
Sbjct: 1   MSSTTKDQKI----NVRRTRRRGRKTRSRDCVALRSCNNGGGTCSSKVSDKLEALKKLIP 60

Query: 61  TRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAVS 109
               +G   + ++LFQQTADYIVLL+ QV +LQ+LIEFYGS D E+AVS
Sbjct: 61  --GHEGEIVKTDQLFQQTADYIVLLRTQVVLLQKLIEFYGSADSEHAVS 103

[Close]

BLAST of Clc07G06880 vs. ExPASy TrEMBL
Match: A0A5N6QW57 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.8e-14
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 1   MSSITKKHRIPWKQS----TRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQS 60
           MSS  +K +   +++    TRRT  R R  +R  RARR+  NGG+ C + VS KLE+L++
Sbjct: 1   MSSTAEKRKALLRRTRRKLTRRTSTRRRLQARPCRARRSFNNGGRTC-AKVSDKLEALKN 60

Query: 61  LIPTRSEDGGHRRAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGDLENAV 108
           LIP  + +G   + ++LF++TA+YIVLL+ QV +LQRL+EFYGS  + N V
Sbjct: 61  LIP--AHNGETVKPDQLFKETAEYIVLLRTQVVILQRLVEFYGSSGMNNVV 108

[Close]

BLAST of Clc07G06880 vs. TAIR 10
Match: AT5G39240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G29370.1); Has 15 Blast hits to 15 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 0


Query: 22  RSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRS-------------EDGGHR 81
           RSR G R  +   N +  G       S KL++L+SL+P  S             ED    
Sbjct: 8   RSRGGRRTSKKFGNRRTSG---GEKFSEKLQALKSLLPPPSKMTEQSRQDAYVEEDSSVG 67

Query: 82  RAEELFQQTADYIVLLKNQVFVLQRLIEFYGSGD 103
             E+LFQ+TADYIV L+ QV VLQ+LIE YGS D
Sbjct: 68  ETEQLFQETADYIVRLRGQVVVLQKLIEIYGSSD 98

[Close]

BLAST of Clc07G06880 vs. TAIR 10
Match: AT3G29370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39240.1); Has 16 Blast hits to 16 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 36/86 (41.86%), Postives = 45/86 (52.33%), Query Frame = 0


Query: 13 KQSTRRTVLRSRYGSRILRARRNHKNGGKACTSDVSAKLESLQSLIPTRSEDGGHRRAEE 72
          K  T R   R+   SR         NG       V  KL +L+SL+P     GG    EE
Sbjct: 5  KTQTTRGRRRANVSSRTRVLHTCCGNGSSDGGKTVMEKLLALKSLLPPPVNVGG-GETEE 64

Query: 73 LFQQTADYIVLLKNQVFVLQRLIEFY 99
          LFQ+TA+YIV L+ QV VL++LIE Y
Sbjct: 65 LFQETAEYIVKLRTQVVVLKKLIEIY 89

The following BLAST results are available for this feature:

BLAST of Clc07G06880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607102.1	1.3e-35	82.83	hypothetical protein SDJN03_00444, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK04615.1	2.9e-35	77.98	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
KAA0056655.1	1.1e-34	77.06	transcription factor UPBEAT1-like [Cucumis melo var. makuwa]	[more]
KAG7036793.1	2.8e-30	76.77	hypothetical protein SDJN02_00413, partial [Cucurbita argyrosperma subsp. argyro...	[more]
PON40768.1	5.6e-15	54.13	transcription factor UPBEAT-like protein [Parasponia andersonii]	[more]

BLAST of Clc07G06880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc07G06880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZU8	1.4e-35	77.98	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UT08	5.3e-35	77.06	Transcription factor UPBEAT1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A2P5AW87	2.7e-15	54.13	Transcription factor UPBEAT-like protein OS=Parasponia andersonii OX=3476 GN=Pan...	[more]
A0A2P5ED64	1.8e-14	53.21	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_207440 PE=4 SV...	[more]
A0A5N6QW57	8.8e-14	45.95	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007655 PE=4 SV=1	[more]

BLAST of Clc07G06880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39240.1	1.3e-09	42.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G29370.1	1.8e-06	41.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 15..105
None	No IPR available	PANTHER	PTHR33124:SF70	SUBFAMILY NOT NAMED	coord: 15..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G06880.1	Clc07G06880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0110165	cellular anatomical entity