Clc07G06300 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G06300
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022007
LocationClcChr07: 11480382 .. 11480756 (-)
RNA-Seq ExpressionClc07G06300
SyntenyClc07G06300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACGCTCTCACAACCATCGTTAAACCAGGATCAAAGTGGAACACTTCCCCAAAGGCCATTCATACATTGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGGTTTACTTCATCAAGCTGTCGCTACACCTTACAACGCATGACGCCTCAATATCAAGGGACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGACTAGACGTGGGACGCATCATTGCCCCACAAATTTGGGGGTTGTTTTTCAAGCCAAGGGGTCTGTCACACCCTCTCCCGGATTATCCTCCAAAACCCGAGAGGAGATGTGAAGACAGCAACCTTGACTCCTCTATAAGGTTCACTGTCCAACCGTTAATCACGTAA

mRNA sequence

ATGAATGACGCTCTCACAACCATCGTTAAACCAGGATCAAAGTGGAACACTTCCCCAAAGGCCATTCATACATTGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGGTTTACTTCATCAAGCTGTCGCTACACCTTACAACGCATGACGCCTCAATATCAAGGGACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGACTAGACGTGGGACGCATCATTGCCCCACAAATTTGGGGGTTGTTTTTCAAGCCAAGGGGTCTGTCACACCCTCTCCCGGATTATCCTCCAAAACCCGAGAGGAGATGTGAAGACAGCAACCTTGACTCCTCTATAAGGTTCACTGTCCAACCGTTAATCACGTAA

Coding sequence (CDS)

ATGAATGACGCTCTCACAACCATCGTTAAACCAGGATCAAAGTGGAACACTTCCCCAAAGGCCATTCATACATTGGCGCCAACTTGCTTGATCGCCGAGGCCAACCTGTGGGTTTACTTCATCAAGCTGTCGCTACACCTTACAACGCATGACGCCTCAATATCAAGGGACTGTGCCATGGTCATTTACTGCATCATGCGGGGAATTCGACTAGACGTGGGACGCATCATTGCCCCACAAATTTGGGGGTTGTTTTTCAAGCCAAGGGGTCTGTCACACCCTCTCCCGGATTATCCTCCAAAACCCGAGAGGAGATGTGAAGACAGCAACCTTGACTCCTCTATAAGGTTCACTGTCCAACCGTTAATCACGTAA

Protein sequence

MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAMVIYCIMRGIRLDVGRIIAPQIWGLFFKPRGLSHPLPDYPPKPERRCEDSNLDSSIRFTVQPLIT
Homology
BLAST of Clc07G06300 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 6.0e-13
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
           M DAL  +++ G KW+ S K + TLA   L+ E  LWVY +K  L  TTHD ++SRD  M
Sbjct: 332 MEDALQVLMQLGMKWSVSLKGVSTLASKSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVM 391

Query: 61  VIYCIMRGIRLDVGRIIAPQIWGL 85
             YCI+R I +DVG++IA Q+  L
Sbjct: 392 ATYCIVRSIPIDVGQLIARQLRAL 415

BLAST of Clc07G06300 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 80.1 bits (196), Expect = 1.5e-11
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
           M DAL T+ + G++W+ S K I TLA + L+ EA LWVY +K  +  T+HD ++SRD  M
Sbjct: 271 MEDALRTLTQSGTQWSVSLKGIKTLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRDRVM 330

Query: 61  VIYCIMRGIRLDVGRIIAPQ 81
             YCI  GI +DV  +IA Q
Sbjct: 331 AAYCIACGILIDVSHLIAAQ 350

BLAST of Clc07G06300 vs. NCBI nr
Match: XP_038882424.1 (uncharacterized protein LOC120073695 [Benincasa hispida])

HSP 1 Score: 71.2 bits (173), Expect = 6.9e-09
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1  MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
          + DAL+ + +PG +W+     IH LA   L+ +A LWVY +K  L+ TTHD +ISRD  M
Sbjct: 3  LEDALSVLTQPGMQWSVLLTGIHMLASNRLLPKARLWVYLVKKWLNPTTHDKTISRDKVM 62

Query: 61 VIYCIMRGIRLDVGRII 78
            Y I   I ++VGR+I
Sbjct: 63 ATYYIAHDIPINVGRLI 79

BLAST of Clc07G06300 vs. NCBI nr
Match: XP_038898613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 5.4e-06
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRD 58
           M +AL  + +PG++W  SPK I TL    L+++  LWVY +K  L  TTHD ++S+D
Sbjct: 304 MRNALKVLAQPGTRWTVSPKGIRTLESKSLLSKGRLWVYLVKKQLIPTTHDRTVSKD 360

BLAST of Clc07G06300 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-06
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
           M +AL  +  PG KW+ +P   + L P  L   A++W+ FIK +L  T HD +IS +  M
Sbjct: 222 MQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIM 281

Query: 61  VIYCIMRGIRLDVGRII 78
           ++YCIM  I L+V  II
Sbjct: 282 LLYCIMEEIPLNVDEII 298

BLAST of Clc07G06300 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-06
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
           M +AL  +  PG KW+ +P   + L P  L   A++W+ FIK +L  T HD +IS +  M
Sbjct: 222 MQNALERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIM 281

Query: 61  VIYCIMRGIRLDVGRII 78
           ++YCIM  I L+V  II
Sbjct: 282 LLYCIMEEIPLNVDEII 298

BLAST of Clc07G06300 vs. ExPASy TrEMBL
Match: A0A5D3BB37 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold282G00030 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-06
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 1  MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
          M D L TI   G+ W+ +P   + L P  L  +AN+W++ +K+ L  T HD +IS D  M
Sbjct: 1  MKDELETIAWKGTIWDKTPIGKYQLFPHNLAMKANIWLFLMKIKLMPTRHDNTISLDKVM 60

Query: 61 VIYCIMRGIRLDV 74
          ++YCIM+ I ++V
Sbjct: 61 LLYCIMQEISVNV 73

BLAST of Clc07G06300 vs. ExPASy TrEMBL
Match: A0A5D3D7L3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00290 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 29/89 (32.58%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
           + DAL  +  P +KW+  P   + L    L  EA +W+ F+K  +  T HD++IS +  M
Sbjct: 38  LEDALKRVAWPRTKWDIMPTGKYQLFLQNLNTEAIIWLVFVKNDIRPTRHDSTISMEHIM 97

Query: 61  VIYCIMRGIRLDVGRIIAPQIWGLFFKPR 90
           ++YCIM  + +++  II+  I      PR
Sbjct: 98  LVYCIMEHLLVNIVEIISEHIIAWVKHPR 126

BLAST of Clc07G06300 vs. ExPASy TrEMBL
Match: A0A5D3DVQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00370 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 37/106 (34.91%), Postives = 51/106 (48.11%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
           M +AL  +     KW+ +    + L    L  EA++W+ FIK  L  T HD +IS +  M
Sbjct: 166 MQEALERVAWARKKWDVTSIKKYRLFLHNLTTEASVWLVFIKKKLMPTRHDNTISFERIM 225

Query: 61  VIYCIMRGIRLDVGRIIAPQIWGLFFKPRGLSHPLPDYPPKPERRC 107
           ++YCIM  I +DV  II   I      PRG       +P   ER C
Sbjct: 226 LLYCIMEEIPVDVDEIICDHIKAWVQHPRGAK----PFPHLIERLC 267

BLAST of Clc07G06300 vs. ExPASy TrEMBL
Match: A0A5D3CW17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00800 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 1   MNDALTTIVKPGSKWNTSPKAIHTLAPTCLIAEANLWVYFIKLSLHLTTHDASISRDCAM 60
           + DAL  I+ PG+KW+  P   + L P  L  E ++W+ FIK ++  T HD++IS +  M
Sbjct: 116 LQDALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIM 175

Query: 61  VIY 64
           ++Y
Sbjct: 176 LLY 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876674.16.0e-1347.62chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida][more]
XP_038904385.11.5e-1147.50uncharacterized protein LOC120090747 [Benincasa hispida][more]
XP_038882424.16.9e-0944.16uncharacterized protein LOC120073695 [Benincasa hispida][more]
XP_038898613.15.4e-0643.86LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida][more]
KAA0048500.17.1e-0641.56protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TZE03.4e-0641.56Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00... [more]
A0A5D3BB375.9e-0639.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D7L32.2e-0532.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DVQ62.2e-0534.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CW173.2e-0438.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G06300.1Clc07G06300.1mRNA