Clc07G05310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G05310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Myb_DNA-bind_3 domain-containing protein
Location	ClcChr07: 6765040 .. 6765568 (-)
RNA-Seq Expression	Clc07G05310
Synteny	Clc07G05310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGCAGAGGATACCGGGGTATTTCATAGAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGATCCTGAAGAGACAGTACCGTGCGATCGCTGAAATGTTGGGGTCAGAGTGTATTGGGTTTGGTTGGAATGCGAAGCGCAAATGTATTGACTGTAAGGTGGAGATATTTGATGCGTGGGTCAAGGTAATTTCATTACTTGTTTTATTTATTTCTTCTTCTTTTAAATTTGTCTTCGCCATAACATAACACATTTCACCTTTAACAGAGCCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTTCGTACTACGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCATAGGGAGTCATGCAACCACCACTGCAGAGGTTGGATCTGAACTTGTTATGGAAGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCCAGCTCGCCCACGTTAGACGACATTCCAACTACCCCCCAGCGGTAG

mRNA sequence

ATGATGCAGCAGAGGATACCGGGGTATTTCATAGAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGATCCTGAAGAGACAGTACCGTGCGATCGCTGAAATGTTGGGGTCAGAGTGTATTGGGTTTGGTTGGAATGCGAAGCGCAAATGTATTGACTGTAAGGTGGAGATATTTGATGCGTGGGTCAAGAGCCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTTCGTACTACGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCATAGGGAGTCATGCAACCACCACTGCAGAGGTTGGATCTGAACTTGTTATGGAAGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCCAGCTCGCCCACGTTAGACGACATTCCAACTACCCCCCAGCGGTAG

Coding sequence (CDS)

ATGATGCAGCAGAGGATACCGGGGTATTTCATAGAGGTAAGCCCACATCTGGAGTCAAGGGTCAGGATCCTGAAGAGACAGTACCGTGCGATCGCTGAAATGTTGGGGTCAGAGTGTATTGGGTTTGGTTGGAATGCGAAGCGCAAATGTATTGACTGTAAGGTGGAGATATTTGATGCGTGGGTCAAGAGCCATCCAAGTGCAAAAGGACTGCGCCATAAGTCATTTTCGTACTACGACGACTTGGCCATCGTATTCGGCAAAGACAGAGCCATAGGGAGTCATGCAACCACCACTGCAGAGGTTGGATCTGAACTTGTTATGGAAGAGGAGAACGAGGACATCTTGAATAACCAGTCCCCAGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCCAGCTCGCCCACGTTAGACGACATTCCAACTACCCCCCAGCGGTAG

Protein sequence

MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQSPDFENFYIPDPPFASSPTLDDIPTTPQR

Homology

[Close]

BLAST of Clc07G05310 vs. NCBI nr
Match: XP_038886815.1 (uncharacterized protein LOC120077046 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-29
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           MM+ ++ G  ++  PH+ESRV++LK+QY AIAEMLG    GFGWN ++KC  C  ++FD 
Sbjct: 4   MMELKLSGCEVKAQPHIESRVKLLKKQYDAIAEMLGPNFSGFGWNERQKCFHCSKDVFDD 63

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVKSHPSAKGLR+KSF Y D++A++FGKDRA G  A    ++  ++ ME       N   
Sbjct: 64  WVKSHPSAKGLRNKSFPYLDEMAMIFGKDRANGLRAEGPDDMAEKIDMETN-----NGMW 123

Query: 121 PDFENFYIPDPP 133
            DF + Y+  PP
Sbjct: 124 DDFSDCYVSHPP 130

[Close]

BLAST of Clc07G05310 vs. NCBI nr
Match: XP_030483301.1 (uncharacterized protein LOC115699898 [Cannabis sativa])

HSP 1 Score: 134.4 bits (337), Expect = 7.9e-28
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           MM  RIP   I+  PH++SR++ILKRQY AI++MLG    GFGWN + KC+     +FD 
Sbjct: 56  MMNDRIPNSGIKAQPHIDSRLKILKRQYTAISDMLGPSASGFGWNEQLKCVVADKIVFDE 115

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVKSHP+AKGL HK F YYD+LAIV+GKDRA G  A     +G    ++E  E+I N  +
Sbjct: 116 WVKSHPTAKGLLHKPFPYYDELAIVYGKDRATGDGA-----MGFSETLDEIAEEINNGWN 175

Query: 121 PDFENFYIPDPPFASSPTLDDIPTT 146
            DF+ F   D   A++     IP++
Sbjct: 176 DDFDPFDPLDEMNANASMNSSIPSS 195

[Close]

BLAST of Clc07G05310 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M+++IP   I+V+ +LESRV+ LK+QY AIA+M+G  C  FGWN +RKCI+ +  +FD 
Sbjct: 52  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 111

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVK HP+A+GL +K F+Y+ DL IVFG+D+A G       E+ S+   + E +D+  N  
Sbjct: 112 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 171

Query: 121 PDFENFYIPDPPFASSPTLDDIPTT 146
              E+F IP+P     P+ +D+P+T
Sbjct: 172 --LEDFDIPNPHGLEPPSGEDMPST 192

[Close]

BLAST of Clc07G05310 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-27
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M+++IP   I+V+ +LESRV+ LK+QY AIA+M+G  C  FGWN +RKCI+ +  +FD 
Sbjct: 84  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 143

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVK HP+A+GL +K F+Y+ DL IVFG+D+A G       E+ S+   + E +D+  N  
Sbjct: 144 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 203

Query: 121 PDFENFYIPDPPFASSPTLDDIPTT 146
              E+F IP+P     P+ +D+P+T
Sbjct: 204 --LEDFDIPNPHGLEPPSGEDMPST 224

[Close]

BLAST of Clc07G05310 vs. NCBI nr
Match: CAD1817157.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 133.7 bits (335), Expect = 1.3e-27
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 2   MQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAW 61
           M +R+PG  ++  PH+ESR ++ KRQY  I+EMLG    GFGWN   KCI C+  +FDAW
Sbjct: 61  MYERLPGCQLKGVPHIESRFKLWKRQYNTISEMLGPAASGFGWNDAEKCIICEKTVFDAW 120

Query: 62  VKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQSP 121
           VKSHP+A GLR KSF Y + L++VFGKDRA G+ A + A+     V EEE     + Q P
Sbjct: 121 VKSHPTAAGLRGKSFPYLEQLSVVFGKDRATGTGAESAADAARN-VEEEELRTHASTQDP 180

Query: 122 DFENFYI 129
           D E F++
Sbjct: 181 DVEMFFM 186

[Close]

BLAST of Clc07G05310 vs. ExPASy Swiss-Prot
Match: O82368 (Uncharacterized protein At2g29880 OS=Arabidopsis thaliana OX=3702 GN=At2g29880 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 24/95 (25.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 19  SRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKSFSY 78
           SR++ +K++Y   A +      GFGW+   K      +++ A++  HP+   +R  +F  
Sbjct: 77  SRMKSMKKEYSVYAALFWFSS-GFGWDPITKQFTAPDDVWAAYLMGHPNHHHMRTSTFED 136

Query: 79  YDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENE 114
           ++DL ++F    A G++A       +    EEE++
Sbjct: 137 FEDLQLIFESAIAKGNNAFGLGGDSNAETFEEEDD 170

[Close]

BLAST of Clc07G05310 vs. ExPASy TrEMBL
Match: A0A803QNC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 69/145 (47.59%), Postives = 92/145 (63.45%), Query Frame = 0


Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           MM  RIP   I+  PH++SR++ILKRQY AI++MLG    GFGWN + KC+     +FD 
Sbjct: 311 MMNDRIPNSGIKAQPHIDSRLKILKRQYTAISDMLGPSASGFGWNEQLKCVVADKIVFDE 370

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVKSHP+AKGL HK F YYD+LAIV+GKDRA G  A     +G    ++E  E+I N  +
Sbjct: 371 WVKSHPTAKGLLHKPFPYYDELAIVYGKDRATGDGA-----MGFSETLDEIAEEINNGWN 430

Query: 121 PDFENFYIPDPPFASSPTLDDIPTT 146
            DF+ F   D   A++     IP++
Sbjct: 431 DDFDPFDPLDEMNANASMNSSIPSS 450

[Close]

BLAST of Clc07G05310 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M+++IP   I+V+ +LESRV+ LK+QY AIA+M+G  C  FGWN +RKCI+ +  +FD 
Sbjct: 52  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 111

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVK HP+A+GL +K F+Y+ DL IVFG+D+A G       E+ S+   + E +D+  N  
Sbjct: 112 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 171

Query: 121 PDFENFYIPDPPFASSPTLDDIPTT 146
              E+F IP+P     P+ +D+P+T
Sbjct: 172 --LEDFDIPNPHGLEPPSGEDMPST 192

[Close]

BLAST of Clc07G05310 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.0e-28
Identity = 64/145 (44.14%), Postives = 97/145 (66.90%), Query Frame = 0


Query: 1   MMQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDA 60
           +M+++IP   I+V+ +LESRV+ LK+QY AIA+M+G  C  FGWN +RKCI+ +  +FD 
Sbjct: 84  LMKEKIPRSNIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDD 143

Query: 61  WVKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQS 120
           WVK HP+A+GL +K F+Y+ DL IVFG+D+A G       E+ S+   + E +D+  N  
Sbjct: 144 WVKGHPNARGLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDIN-- 203

Query: 121 PDFENFYIPDPPFASSPTLDDIPTT 146
              E+F IP+P     P+ +D+P+T
Sbjct: 204 --LEDFDIPNPHGLEPPSGEDMPST 224

[Close]

BLAST of Clc07G05310 vs. ExPASy TrEMBL
Match: A0A6V7NF77 (Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS368 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 6.5e-28
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 2   MQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAW 61
           M +R+PG  ++  PH+ESR ++ KRQY  I+EMLG    GFGWN   KCI C+  +FDAW
Sbjct: 61  MYERLPGCQLKGVPHIESRFKLWKRQYNTISEMLGPAASGFGWNDAEKCIICEKTVFDAW 120

Query: 62  VKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQSP 121
           VKSHP+A GLR KSF Y + L++VFGKDRA G+ A + A+     V EEE     + Q P
Sbjct: 121 VKSHPTAAGLRGKSFPYLEQLSVVFGKDRATGTGAESAADAARN-VEEEELRTHASTQDP 180

Query: 122 DFENFYI 129
           D E F++
Sbjct: 181 DVEMFFM 186

[Close]

BLAST of Clc07G05310 vs. ExPASy TrEMBL
Match: A0A199VNN9 (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_19059 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.9e-27
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 0


Query: 2   MQQRIPGYFIEVSPHLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAW 61
           M +R+PG  ++  PH+ESR ++ KRQY AI+EMLG    GFGWN   KCI C+  +FDAW
Sbjct: 1   MYERLPGCQLKGVPHIESRFKLWKRQYNAISEMLGPAASGFGWNDAEKCIICEKTVFDAW 60

Query: 62  VKSHPSAKGLRHKSFSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQSP 121
           VKSHP+A GLR KSF Y + L++VFGKDRA G+ A + A+     V EEE     + Q  
Sbjct: 61  VKSHPTAAGLRGKSFPYLEQLSVVFGKDRATGAGAESAADAARN-VEEEELRTHASTQDT 120

Query: 122 DFENFYI 129
           D E F++
Sbjct: 121 DVEMFFM 126

[Close]

BLAST of Clc07G05310 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-10
Identity = 34/112 (30.36%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 16  HLESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKS 75
           H  SR++ LK QY++  + L     GFGW+   K      E++  ++K+HP+ K LR+ +
Sbjct: 69  HYLSRMKYLKIQYQSCLD-LQRFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDT 128

Query: 76  FSYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENEDILNNQSPDFENFY 128
           F ++D+L I+FG+  A G +A    +  ++ +     E+       DF+N Y
Sbjct: 129 FEFFDELQIIFGEGVATGKNAIGLCD-STDGLTYRAGENPRKEYVDDFDNVY 178

[Close]

BLAST of Clc07G05310 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 30/104 (28.85%), Postives = 48/104 (46.15%), Query Frame = 0


Query: 17  LESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKSF 76
           L  R   L + Y+ +  +L  +  GF W+  R  I     ++D+++K HP A+  R KS 
Sbjct: 223 LRHRYNKLLKYYKDMEAILKED--GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSL 282

Query: 77  SYYDDLAIVF------GKDRAIGSHATTTAEVGSELVMEEENED 115
             Y+DL  +F      G D      A  T+E  +    +E+N D
Sbjct: 283 PSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKAS---QEQNSD 321

[Close]

BLAST of Clc07G05310 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 30/104 (28.85%), Postives = 48/104 (46.15%), Query Frame = 0


Query: 17  LESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKSF 76
           L  R   L + Y+ +  +L  +  GF W+  R  I     ++D+++K HP A+  R KS 
Sbjct: 223 LRHRYNKLLKYYKDMEAILKED--GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSL 282

Query: 77  SYYDDLAIVF------GKDRAIGSHATTTAEVGSELVMEEENED 115
             Y+DL  +F      G D      A  T+E  +    +E+N D
Sbjct: 283 PSYNDLDTIFACQAEQGTDHRDDGSAAQTSETKAS---QEQNSD 321

[Close]

BLAST of Clc07G05310 vs. TAIR 10
Match: AT2G29880.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 260 Blast hits to 212 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 240; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-05
Identity = 24/95 (25.26%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 19  SRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKSFSY 78
           SR++ +K++Y   A +      GFGW+   K      +++ A++  HP+   +R  +F  
Sbjct: 77  SRMKSMKKEYSVYAALFWFSS-GFGWDPITKQFTAPDDVWAAYLMGHPNHHHMRTSTFED 136

Query: 79  YDDLAIVFGKDRAIGSHATTTAEVGSELVMEEENE 114
           ++DL ++F    A G++A       +    EEE++
Sbjct: 137 FEDLQLIFESAIAKGNNAFGLGGDSNAETFEEEDD 170

[Close]

BLAST of Clc07G05310 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.6e-05
Identity = 22/96 (22.92%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 17  LESRVRILKRQYRAIAEMLGSECIGFGWNAKRKCIDCKVEIFDAWVKSHPSAKGLRHKSF 76
           L++R + L+  ++++  +L  +  GF W+  R+ +     ++D ++K HP ++  R KS 
Sbjct: 66  LKNRHKTLRNLFKSVNNLLIED--GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSI 125

Query: 77  SYYDDLAIVFGKDRAIGSHATTTAEVGSELVMEEEN 113
             Y DL +V+    +      + +E  S+ +++E++
Sbjct: 126 PCYKDLCLVYSDGMSEHKAEESISEGESKTLIQEDD 159

The following BLAST results are available for this feature:

BLAST of Clc07G05310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886815.1	5.5e-29	48.48	uncharacterized protein LOC120077046 [Benincasa hispida]	[more]
XP_030483301.1	7.9e-28	47.59	uncharacterized protein LOC115699898 [Cannabis sativa]	[more]
TYJ96933.1	1.0e-27	44.14	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	1.0e-27	44.14	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
CAD1817157.1	1.3e-27	50.39	unnamed protein product [Ananas comosus var. bracteatus]	[more]

BLAST of Clc07G05310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82368	3.7e-04	25.26	Uncharacterized protein At2g29880 OS=Arabidopsis thaliana OX=3702 GN=At2g29880 P...	[more]

BLAST of Clc07G05310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803QNC5	3.8e-28	47.59	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A5D3BC95	5.0e-28	44.14	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	5.0e-28	44.14	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]
A0A6V7NF77	6.5e-28	50.39	Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=29...	[more]
A0A199VNN9	1.9e-27	50.39	Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_19059 PE=4...	[more]

BLAST of Clc07G05310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	6.1e-10	30.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.1	1.5e-05	28.85	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	1.5e-05	28.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G29880.1	2.6e-05	25.26	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.1	2.6e-05	22.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..148
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G05310.1	Clc07G05310.1	mRNA