Clc07G04333 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G04333
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease H
Location	ClcChr07: 4836218 .. 4839998 (-)
RNA-Seq Expression	Clc07G04333
Synteny	Clc07G04333

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCAATCAAGTATGTATTCGAGAAGCCATCTTTATCACAAAGAATTGCTAGATGGCAAGTTTTGCTCTTAGAGTACGATATCGTCTATGTTACAAAGAAAGCAATAAAAGGAAGTGTTCTTGCTGATTATTTAGCAGATTCACCTTTGGAGGATTATGAGTCTAGGAGTTTAGATTTTCCAAATGAAAGCATCATGACCATTGATGAGGGGGAAGAAATCTTAGATCTAGAACAGTGGGTTATGTTATTTGACGAAGCTTCAAATGAGTTAGGACATGGGATTGGGGCAATACTAATATCTCCGGAGAATAAGTTGTTTCCCCTCACAATAAAATCGTACTTTGATTGCACAAACAATGTCGCGGAATATGAAGCATGTAGTATGGGGACTCATTATTAGTTATAGATCAATTGAATGATGAATGGGAGCCTCGAGATCCAAAATTGATCCCGTATAAAAGGCATATACTTCAACTATGCTAGGACTTCATTAGAGTCACATTTGACCACATCCCGCATGATAATAAGCAAGTGGCTGGCGCATTAGCTATGTTGTCTTTGCCATGTTTATTGTTGAACTAAACGAGGAAGTAGAATTAAATCACAATTGAAAAGCGAGAGGTTCCTGCATACTGTCTCCATATTGAGAAAGAGCTGGATGAAAGACCCTGGTATTTTGACATCAAACGTTACATCAAATGATAAGCGAACTATAGGAAGGTTGTCAATGAAATTTTTCTTGAATGGAGAAACATTATACAAAAGGAATCATGACTTGGTACTTCTTAGATGTGTTGATGAAAATGAAGCAAAGATTATTATGAAAGAAGTCCATGATGGTATTTGCGGAACACATGCTAATGATCACATGATGGCTAAGCAAATCCTTCGTACTGGTTATTACTGGCTTAAGTACATTATAGAGAAGAATGAGATGAAAACAGAAGAAGAAAAAAAATTAACTAAATAAGAATAGATCTATAAGAAATCAATGTAAAAGAGTACAAAATTGAGCTACATGAAAAAAAAAAAGAAAAAAAAAAAAAAAGAAATAAGGACAATAGTAGTAGCAAAAACCTCTAATACTTTACTCCGTTTCTTTTTCAGATCATTTGGAGAAAGAGAAGCAGAGAAAAATGAAGAAAGGTCATATGTTGAGGATAACAATCATATAAGGAAGAATAGTCAACAGGTGACTCACCACATAGTGGCAAGCTAAAGTGGTGCTAAGTGTACCAATCTGATTACGCTTTCTAGAAGGGTTTGTTGTTACAAAGGTTGTTATTTATCACCCTATGGGGAAGCTACACGTCAACCCTTTCTGTTGTAATATTCTTTCTATTATTTGGATTTATTCATATTCATTTATTTGTTATTATTTGGGTAATCTATATATAAATGCCCGACCTCTTCTTTGTTTTGCATTGAAGAAGGTAAATAATATATAGTGAAGAAATTCTCTTCCGATTGAATTATCTGGTGTTATTTCCTTTTCTTTATCTTTCTCAACTTGGCATCAAAGCCATTAATGGCTAAACCCAGTCAAACCTAGTCCTCTATTACCTATTTTGCTAATGGGTATGGATCTTTAACCAACCTACCTTTGAATCAGTTGTTGATTTAAATCACGTCCATTAAAATGGATAGATCCAATTTTCTTCTTTGGTAGAATATGGCCTGACCAATTCGGACTCGAAGAGTACCTCATTGGGGAAAAGTTGCGCCCCTAGCAGATTTATAACCTAGCAATCGAGTGGCAATGAAGGGTCGAGTAGTGCCGTTGCTCCAGTCGCCGAGCAACAACCCAATCCTGCGTATCAATCGTGGATTGCAGTTGATCAGCTAGTTCGTGGTTAGATGTATAACTCTATGTCTCAAGACATTGCTACCAAGGTATTGGGGTTTTAGACCTCGAAGGAACTTTGGGATGCTGTACAACAATTGTTTGGGATTCAATCCAGAGTAGAGGTTGGTTATCTCAAGCTACTATTTTAACAGACAAGGAAAGGTGCATTGAAAATGGATGAGTACTTAGCTACTATGAAAAAAATACTCTAACAGACTCGCTCTTGCAGGTAGTCCTGTGCTTGTTAGTGATTTGGTTTCGTAGGTGTTGTCTAGATTAGACGAGGAATACAACCTTATTGTTGTTTCAATTCAGGGAAAGTATTGAGTTACTTCGACTAAGGTGCAGTGTGATCTTCTATCTTATGAATGTCGGTTGGAGTATCAACTAACTATGAAGACTGGGCTGATGAATTTAAATAGTTACGCCGCTCCTCCATCTGCCAATATATTTCAAAGTTCTGGTCAAAATGCTCTAGCACAGAATCAAGGTAGCCAAAATCAAGGAAATCAGAGTTTCAATCCAAAGAATAATCAGAATAGAGGAAGAAGAGGTTGGAATAATGCGTCTTCTAATCGCTCGACTTGCCAGACCTGTGGAAAACTTGGGCATACGGCTGACATCTACTTCTTTCACTACAACAAGGAATTTAATAATCTGAAGCATCTGAAGCAGACTCATCTCAAACCTCAATCTAGCTTTAATATGTTAAGTAAGGGGTCTTCTTCTAATCCTTCTGTGTTGATGGCTAATATAGCCTTTGTGAATTCTAAAACGGTTGTCAACCCAAATTGGTACGCCGATAGTGGGGCTACCAATCATGTTACTGCTAACCCAAATTTTCTGAACTCCTCCGTCAATTATTCAAGTATGAAAAAGGTAGTTGTGGGTGATGACAATCAACTTGCTAGTAGTAAATTGGGTATTGTTGTTCTTAATTCTTGTAAAGGGTATCTGAAATTGAGTAATGTGCTATGTGTTTCCAATATTGTAAAGAATCTGGTTAGTGTTTCCAAATTTGCTAGTGATAATCACGTATTTATTGAGTTTCATTTTGATTTTTGCGTGGTTAAGGACAAAATGTCTATGGAAGAGCTGCTGAAGGGAATCCTTAAAGTTGGACTTTATCGGTTGAAGTTGCCCAATTAATATATAAATAATGGCCAAGGAGTTACACAATTAGATGCTTCTTGGAATGAGTGCCTCAGCTACTACTGACACATTTCCCACTATGTTGAATGTATTGTTCACCAAGTCTCTTCTTCATAAGAGGTTGGGTTATCCTTTTATAAGAGTTTTTGACATGGTTTTGCAAAAATGTAATATCAAACTTCCAGTTAATGATAAGTTAAATTTCTGTGAAGCTTGTCAATTTGGGAAATCACATAATCTTCCTTTTCCGACCTCTACTTCCTATGCTTCAACAATATTTAAATTAGTTCACTCAGATTTGTGGGGTCCCGCTCCAATTTTTTCTACAGGTGGATTTAGATATTATGTTCTTTTTGTGGATGATTTTAGTCGTTTCACTTGGTTATACCCACTAAAGCGACACAATTATTGCATTTAAGGAGTTTCAAGCTCTAGAACAAAATTAGTTTAATACTTCGATTAAAACTATTCAAATGGATGGCGGTGGTGAATTTAAATCAGTGACTCAAATTTGTTTTGCTCTTGGCATTAATACACGTTTTTCGTGTCCTTACACTTCTGTTCAGAATGGTCGAGCTGAGAGGAAGTATCGACATGTGGTTGAAGTTGGACTTACCCTACTTGCCTAAGCATCATTACGACTTAAATTCTAGTGGTATGCATTTCAATATGCTACTTTTCTTATTAATAATTCGCCTTCATCTGTTCTTCAGGGTGTTACTCTGGCAGAAGTTCTACTTCGTCAAGGGATGGTCATATCTTTCTTAAAGATTTTTAG

mRNA sequence

ATGAATCCAATCAAGTATGTATTCGAGAAGCCATCTTTATCACAAAGAATTGCTAGATGGCAAGTTTTGCTCTTAGAGTACGATATCGTCTATGTTACAAAGAAAGCAATAAAAGGAAGTGTTCTTGCTGATTATTTAGCAGATTCACCTTTGGAGGATTATGAGTCTAGGAGTTTAGATTTTCCAAATGAAAGCATCATGACCATTGATGAGGGGGAAGAAATCTTAGATCTAGAACAGTGGGTTATGTTATTTGACGAAGCTTCAAATGAGTTAGGACATGGGATTGGGGCAATACTAATATCTCCGGAGAATAAGTTGTTTCCCCTCACAATAAAATCGTACTTTGATTGCACAAACAATGTCGCGGAATATGAAGCATGTACAAGTGGCTGGCGCATTAGCTATGTTGTCTTTGCCATGTTTATTGTTGAACTAAACGAGGAAGTTCCTGCATACTGTCTCCATATTGAGAAAGAGCTGGATGAAAGACCCTGGAATCATGACTTGGTACTTCTTAGATGTGTTGATGAAAATGAAGCAAAGATTATTATGAAAGAAGTCCATGATGGTATTTGCGGAACACATGCTAATGATCACATGATGGCTAAGCAAATCCTTCGTACTGGTTATTACTGGCTTAAATCATTTGGAGAAAGAGAAGCAGAGAAAAATGAAGAAAGGTCATATGTTGAGGATAACAATCATATAAGGAAGAATAGTCAACAGATCCAATTTTCTTCTTTGGTAGAATATGGCCTGACCAATTCGGACTCGAAGAGTACCTCATTGGGGAAAAGGTCGAGTAGTGCCGTTGCTCCAGTCGCCGAGCAACAACCCAATCCTGCGTATCAATCGTGGATTGCAGTTGATCAGCTAACCTCGAAGGAACTTTGGGATGCTGTACAACAATTGTTTGGGATTCAATCCAGAGTAGAGGTGCAGTGTGATCTTCTATCTTATGAATGTCGGTTGGAGTATCAACTAACTATGAAGACTGGGCTGATGAATTTAAATAGTTACGCCGCTCCTCCATCTGCCAATATATTTCAAAGTTCTGGTCAAAATGCTCTAGCACAGAATCAAGGTAGCCAAAATCAAGGAAATCAGAGTTTCAATCCAAAGAATAATCAGAATAGAGGAAGAAGAGGTTGGAATAATGCGTCTTCTAATCGCTCGACTTGCCAGACCTGTGGAAAACTTGGGCATACGGCTGACATCTACTTCTTTCACTACAACAAGGAATTTAATAATCTGAAGCATCTGAAGCAGACTCATCTCAAACCTCAATCTAGCTTTAATATGTTAAGTAAGGGGTCTTCTTCTAATCCTTCTGTGTTGATGGCTAATATAGCCTTTGTGAATTCTAAAACGGTTGTCAACCCAAATTGGTACGCCGATAGTGGGGCTACCAATCATGTTACTGCTAACCCAAATTTTCTGAACTCCTCCGTCAATTATTCAAGTATGAAAAAGGTAGTTGTGGGTGATGACAATCAACTTGCTAGTAGTAAATTGGGTATTGTTGTTCTTAATTCTTGTAAAGGGTATCTGAAATTGAGTAATGTGCTATGTGTTTCCAATATTGTAAAGAATCTGGTTAGTGTTTCCAAATTTGCTAGTGATAATCACGTATTTATTGAGTTTCATTTTGATTTTTGCGTGGTTAAGGACAAAATGTCTATGGAAGAGCTGCTGAAGGGAATCCTTAAAGTTGGACTTTATCGGTTGAAAATGGTCGAGCTGAGAGGAAGTATCGACATGTGGTTGAAGTTGGACTTACCCTACTTGCCTAAGCATCATTACGACTTAAATTCTAGTGGGTGTTACTCTGGCAGAAGTTCTACTTCGTCAAGGGATGGTCATATCTTTCTTAAAGATTTTTAG

Coding sequence (CDS)

ATGAATCCAATCAAGTATGTATTCGAGAAGCCATCTTTATCACAAAGAATTGCTAGATGGCAAGTTTTGCTCTTAGAGTACGATATCGTCTATGTTACAAAGAAAGCAATAAAAGGAAGTGTTCTTGCTGATTATTTAGCAGATTCACCTTTGGAGGATTATGAGTCTAGGAGTTTAGATTTTCCAAATGAAAGCATCATGACCATTGATGAGGGGGAAGAAATCTTAGATCTAGAACAGTGGGTTATGTTATTTGACGAAGCTTCAAATGAGTTAGGACATGGGATTGGGGCAATACTAATATCTCCGGAGAATAAGTTGTTTCCCCTCACAATAAAATCGTACTTTGATTGCACAAACAATGTCGCGGAATATGAAGCATGTACAAGTGGCTGGCGCATTAGCTATGTTGTCTTTGCCATGTTTATTGTTGAACTAAACGAGGAAGTTCCTGCATACTGTCTCCATATTGAGAAAGAGCTGGATGAAAGACCCTGGAATCATGACTTGGTACTTCTTAGATGTGTTGATGAAAATGAAGCAAAGATTATTATGAAAGAAGTCCATGATGGTATTTGCGGAACACATGCTAATGATCACATGATGGCTAAGCAAATCCTTCGTACTGGTTATTACTGGCTTAAATCATTTGGAGAAAGAGAAGCAGAGAAAAATGAAGAAAGGTCATATGTTGAGGATAACAATCATATAAGGAAGAATAGTCAACAGATCCAATTTTCTTCTTTGGTAGAATATGGCCTGACCAATTCGGACTCGAAGAGTACCTCATTGGGGAAAAGGTCGAGTAGTGCCGTTGCTCCAGTCGCCGAGCAACAACCCAATCCTGCGTATCAATCGTGGATTGCAGTTGATCAGCTAACCTCGAAGGAACTTTGGGATGCTGTACAACAATTGTTTGGGATTCAATCCAGAGTAGAGGTGCAGTGTGATCTTCTATCTTATGAATGTCGGTTGGAGTATCAACTAACTATGAAGACTGGGCTGATGAATTTAAATAGTTACGCCGCTCCTCCATCTGCCAATATATTTCAAAGTTCTGGTCAAAATGCTCTAGCACAGAATCAAGGTAGCCAAAATCAAGGAAATCAGAGTTTCAATCCAAAGAATAATCAGAATAGAGGAAGAAGAGGTTGGAATAATGCGTCTTCTAATCGCTCGACTTGCCAGACCTGTGGAAAACTTGGGCATACGGCTGACATCTACTTCTTTCACTACAACAAGGAATTTAATAATCTGAAGCATCTGAAGCAGACTCATCTCAAACCTCAATCTAGCTTTAATATGTTAAGTAAGGGGTCTTCTTCTAATCCTTCTGTGTTGATGGCTAATATAGCCTTTGTGAATTCTAAAACGGTTGTCAACCCAAATTGGTACGCCGATAGTGGGGCTACCAATCATGTTACTGCTAACCCAAATTTTCTGAACTCCTCCGTCAATTATTCAAGTATGAAAAAGGTAGTTGTGGGTGATGACAATCAACTTGCTAGTAGTAAATTGGGTATTGTTGTTCTTAATTCTTGTAAAGGGTATCTGAAATTGAGTAATGTGCTATGTGTTTCCAATATTGTAAAGAATCTGGTTAGTGTTTCCAAATTTGCTAGTGATAATCACGTATTTATTGAGTTTCATTTTGATTTTTGCGTGGTTAAGGACAAAATGTCTATGGAAGAGCTGCTGAAGGGAATCCTTAAAGTTGGACTTTATCGGTTGAAAATGGTCGAGCTGAGAGGAAGTATCGACATGTGGTTGAAGTTGGACTTACCCTACTTGCCTAAGCATCATTACGACTTAAATTCTAGTGGGTGTTACTCTGGCAGAAGTTCTACTTCGTCAAGGGATGGTCATATCTTTCTTAAAGATTTTTAG

Protein sequence

MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLDFPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTNNVAEYEACTSGWRISYVVFAMFIVELNEEVPAYCLHIEKELDERPWNHDLVLLRCVDENEAKIIMKEVHDGICGTHANDHMMAKQILRTGYYWLKSFGEREAEKNEERSYVEDNNHIRKNSQQIQFSSLVEYGLTNSDSKSTSLGKRSSSAVAPVAEQQPNPAYQSWIAVDQLTSKELWDAVQQLFGIQSRVEVQCDLLSYECRLEYQLTMKTGLMNLNSYAAPPSANIFQSSGQNALAQNQGSQNQGNQSFNPKNNQNRGRRGWNNASSNRSTCQTCGKLGHTADIYFFHYNKEFNNLKHLKQTHLKPQSSFNMLSKGSSSNPSVLMANIAFVNSKTVVNPNWYADSGATNHVTANPNFLNSSVNYSSMKKVVVGDDNQLASSKLGIVVLNSCKGYLKLSNVLCVSNIVKNLVSVSKFASDNHVFIEFHFDFCVVKDKMSMEELLKGILKVGLYRLKMVELRGSIDMWLKLDLPYLPKHHYDLNSSGCYSGRSSTSSRDGHIFLKDF

Homology

[Close]

BLAST of Clc07G04333 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 246.1 bits (627), Expect = 7.9e-61
Identity = 144/331 (43.50%), Postives = 171/331 (51.66%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS RIARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGHGIG ILISP+ +L+PLT +  FDCT+
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFDCTH 1338

Query: 121  NVAEYEACTSG----------------------------W-------------------- 180
            N+AEYEAC+ G                            W                    
Sbjct: 1339 NMAEYEACSMGVQAAVDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQE 1398

Query: 181  --RISY---------------VVFAMFIVELNE----------EVPAYCLHIEKELDERP 215
               IS+                +  MF +ELNE          +VPA C+ IE+E D  P
Sbjct: 1399 FDEISFDYLPRENNQVADALATLAVMFNLELNEDVSPIKVGRRDVPASCMSIEEEPDGNP 1458

[Close]

BLAST of Clc07G04333 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-60
Identity = 145/331 (43.81%), Postives = 171/331 (51.66%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS RIARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1048 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTQKAIKGSALADYLAQQPINDYIPVKFD 1107

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGH IGAILISP+ +L+PLT K  FDCT+
Sbjct: 1108 FPDEYISTITASEESLDPQTWTMMFDGASNELGHEIGAILISPKGELYPLTTKLCFDCTH 1167

Query: 121  NVAEYEACTSG----------------------------W-------------------- 180
            N+AEYEAC+ G                            W                    
Sbjct: 1168 NMAEYEACSMGVQAAIDMKVKKFKVFGDSTLVIHQLRGEWETRDVKLLPYKQLITELSQE 1227

Query: 181  --RISY---------------VVFAMFIVELNE----------EVPAYCLHIEKELDERP 215
               IS+                +  MF +ELNE          +VPA C+ IE+E D  P
Sbjct: 1228 FDEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKVGRRDVPASCMSIEEEPDGNP 1287

[Close]

BLAST of Clc07G04333 vs. NCBI nr
Match: XP_022150030.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia])

HSP 1 Score: 240.7 bits (613), Expect = 3.3e-59
Identity = 141/330 (42.73%), Postives = 169/330 (51.21%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PI+Y+FEKPSLS RIARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1015 MDPIRYIFEKPSLSGRIARWQVLLSEYDIVYVTQKAIKGSALADYLAQQPINDYIPVKFD 1074

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGHGIGAILISP+ +L+PLT +  FDCT+
Sbjct: 1075 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLCFDCTH 1134

Query: 121  NVAEYEACTSG---------------------------WRISYV---------------- 180
            N+AEYEAC+ G                           W I  V                
Sbjct: 1135 NMAEYEACSMGVQAAVDMKVKXKVFGDSMLVIHQLRGEWEIRDVKLLPYKQLITELSQEF 1194

Query: 181  ---------------------VFAMFIVELNE----------EVPAYCLHIEKELDERPW 215
                                 +  MF +ELNE          +V A C+ IE+E D  PW
Sbjct: 1195 DEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKVGRRDVSASCMSIEEEPDGNPW 1254

[Close]

BLAST of Clc07G04333 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 240.4 bits (612), Expect = 4.3e-59
Identity = 141/331 (42.60%), Postives = 170/331 (51.36%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS  IARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1610 MDPIKYIFEKPSLSGGIARWQVLLSEYDIVYVTQKAIKGSALADYLAQQPINDYIPVKFD 1669

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGHGIGAILISP+ +L+PL  +  FDC +
Sbjct: 1670 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLIARLCFDCKH 1729

Query: 121  NVAEYEACTSG----------------------------W-------------------- 180
            N+AEYEAC+ G                            W                    
Sbjct: 1730 NMAEYEACSMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQFITELSQE 1789

Query: 181  --RISY---------------VVFAMFIVELNE----------EVPAYCLHIEKELDERP 215
               IS+                +  MF +ELNE          +VPA C+ IE+E D +P
Sbjct: 1790 FDEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKVGRRDVPASCMSIEEEPDGKP 1849

[Close]

BLAST of Clc07G04333 vs. NCBI nr
Match: KAA0046213.1 (uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 239.6 bits (610), Expect = 7.4e-59
Identity = 134/330 (40.61%), Postives = 172/330 (52.12%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS RIA+WQVLL EYDIVYVTKKAIKGS +AD+LA  P+ DYE   +D
Sbjct: 1160 MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAVADHLAAQPVADYEPMRID 1219

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+++I  +++     D E W MLFD ASNELGHGIG +LISPE K+FPLT K  F+CT+
Sbjct: 1220 FPDDNIFLVEKNAR--DHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTH 1279

Query: 121  NVAEYEACTSGWRIS-------------------------------YVVFAMFIVELNE- 180
            N+AEYEAC  G R++                                V ++ ++ +L++ 
Sbjct: 1280 NIAEYEACIMGLRVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQN 1339

Query: 181  -------------------------------------------EVPAYCLHIEKELDERP 214
                                                       +VPAYC+++    D +P
Sbjct: 1340 FEKISFDHVPREDNRMADALATLAMMFDLNLEFELHPIQITKRDVPAYCMNVGN--DNKP 1399

[Close]

BLAST of Clc07G04333 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-09
Identity = 83/262 (31.68%), Postives = 120/262 (45.80%), Query Frame = 0


Query: 326 EYQLTMKTGLMNLNS-YAAPPSANIFQSSGQNALAQNQGSQNQG-NQSFNPKNNQNRGRR 385
           E  +  ++ L+ LNS    P +AN+      N    N+   N+G N+++N  NN NR   
Sbjct: 182 ERLINRESKLLALNSAEVVPITANVVTHRNTNT---NRNQNNRGDNRNYN--NNNNRSNS 241

Query: 386 GWNNASSNRS----------TCQTCGKLGHTADIYFFHYNKEFNNLKHLKQTHLKPQSSF 445
              ++S +RS           CQ C   GH+A              K   Q H + QS+ 
Sbjct: 242 WQPSSSGSRSDNRQPKPYLGRCQICSVQGHSA--------------KRCPQLH-QFQSTT 301

Query: 446 NMLSKGSSSNPSVLMANIAFVNSKTVVNPNWYADSGATNHVTANPNFLNSSVNYSSMKKV 505
           N     S   P    AN+A VNS    N NW  DSGAT+H+T++ N L+    Y+    V
Sbjct: 302 NQQQSTSPFTPWQPRANLA-VNSPYNAN-NWLLDSGATHHITSDFNNLSFHQPYTGGDDV 361

Query: 506 VVGDDNQLASSKLGIVVLNSCKGYLKLSNVLCVSNIVKNLVSVSKFASDNHVFIEFHFDF 565
           ++ D + +  +  G   L +    L L+ VL V NI KNL+SV +  + N V +EF    
Sbjct: 362 MIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPNIHKNLISVYRLCNTNRVSVEFFPAS 421

Query: 566 CVVKDKMSMEELLKGILKVGLY 576
             VKD  +   LL+G  K  LY
Sbjct: 422 FQVKDLNTGVPLLQGKTKDELY 421

[Close]

BLAST of Clc07G04333 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-09
Identity = 71/234 (30.34%), Postives = 102/234 (43.59%), Query Frame = 0


Query: 353 SGQNALAQNQGSQNQGNQSFNPKNNQNRGRRGWNNASSN-----------RSTCQTCGKL 412
           S +N    N  +    N  ++ +NN N   + W  +S+N              CQ CG  
Sbjct: 227 SHRNTTTTNNNNNGNRNNRYDNRNNNNNS-KPWQQSSTNFHPNNNQSKPYLGKCQICGVQ 286

Query: 413 GHTADIYFFHYNKEFNNLKHLKQTHLKPQSSFNMLSKGSSSNPSVLMANIAFVNSKTVVN 472
           GH+A        K  + L+H         SS N     S   P    AN+A        +
Sbjct: 287 GHSA--------KRCSQLQHF-------LSSVNSQQPPSPFTPWQPRANLAL--GSPYSS 346

Query: 473 PNWYADSGATNHVTANPNFLNSSVNYSSMKKVVVGDDNQLASSKLGIVVLNSCKGYLKLS 532
            NW  DSGAT+H+T++ N L+    Y+    V+V D + +  S  G   L++    L L 
Sbjct: 347 NNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLNLH 406

Query: 533 NVLCVSNIVKNLVSVSKFASDNHVFIEFHFDFCVVKDKMSMEELLKGILKVGLY 576
           N+L V NI KNL+SV +  + N V +EF      VKD  +   LL+G  K  LY
Sbjct: 407 NILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELY 442

[Close]

BLAST of Clc07G04333 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.8e-61
Identity = 144/331 (43.50%), Postives = 171/331 (51.66%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS RIARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1219 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTRKAIKGSALADYLAQQPINDYIPVKFD 1278

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGHGIG ILISP+ +L+PLT +  FDCT+
Sbjct: 1279 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGGILISPKGELYPLTARLCFDCTH 1338

Query: 121  NVAEYEACTSG----------------------------W-------------------- 180
            N+AEYEAC+ G                            W                    
Sbjct: 1339 NMAEYEACSMGVQAAVDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQLITELSQE 1398

Query: 181  --RISY---------------VVFAMFIVELNE----------EVPAYCLHIEKELDERP 215
               IS+                +  MF +ELNE          +VPA C+ IE+E D  P
Sbjct: 1399 FDEISFDYLPRENNQVADALATLAVMFNLELNEDVSPIKVGRRDVPASCMSIEEEPDGNP 1458

[Close]

BLAST of Clc07G04333 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.5e-61
Identity = 145/331 (43.81%), Postives = 171/331 (51.66%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS RIARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1048 MDPIKYIFEKPSLSGRIARWQVLLSEYDIVYVTQKAIKGSALADYLAQQPINDYIPVKFD 1107

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGH IGAILISP+ +L+PLT K  FDCT+
Sbjct: 1108 FPDEYISTITASEESLDPQTWTMMFDGASNELGHEIGAILISPKGELYPLTTKLCFDCTH 1167

Query: 121  NVAEYEACTSG----------------------------W-------------------- 180
            N+AEYEAC+ G                            W                    
Sbjct: 1168 NMAEYEACSMGVQAAIDMKVKKFKVFGDSTLVIHQLRGEWETRDVKLLPYKQLITELSQE 1227

Query: 181  --RISY---------------VVFAMFIVELNE----------EVPAYCLHIEKELDERP 215
               IS+                +  MF +ELNE          +VPA C+ IE+E D  P
Sbjct: 1228 FDEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKVGRRDVPASCMSIEEEPDGNP 1287

[Close]

BLAST of Clc07G04333 vs. ExPASy TrEMBL
Match: A0A6J1D7C7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-59
Identity = 141/330 (42.73%), Postives = 169/330 (51.21%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PI+Y+FEKPSLS RIARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1015 MDPIRYIFEKPSLSGRIARWQVLLSEYDIVYVTQKAIKGSALADYLAQQPINDYIPVKFD 1074

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGHGIGAILISP+ +L+PLT +  FDCT+
Sbjct: 1075 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLTARLCFDCTH 1134

Query: 121  NVAEYEACTSG---------------------------WRISYV---------------- 180
            N+AEYEAC+ G                           W I  V                
Sbjct: 1135 NMAEYEACSMGVQAAVDMKVKXKVFGDSMLVIHQLRGEWEIRDVKLLPYKQLITELSQEF 1194

Query: 181  ---------------------VFAMFIVELNE----------EVPAYCLHIEKELDERPW 215
                                 +  MF +ELNE          +V A C+ IE+E D  PW
Sbjct: 1195 DEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKVGRRDVSASCMSIEEEPDGNPW 1254

[Close]

BLAST of Clc07G04333 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.1e-59
Identity = 141/331 (42.60%), Postives = 170/331 (51.36%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS  IARWQVLL EYDIVYVT+KAIKGS LADYLA  P+ DY     D
Sbjct: 1610 MDPIKYIFEKPSLSGGIARWQVLLSEYDIVYVTQKAIKGSALADYLAQQPINDYIPVKFD 1669

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+E I TI   EE LD + W M+FD ASNELGHGIGAILISP+ +L+PL  +  FDC +
Sbjct: 1670 FPDEYISTITASEESLDPQTWTMMFDGASNELGHGIGAILISPKGELYPLIARLCFDCKH 1729

Query: 121  NVAEYEACTSG----------------------------W-------------------- 180
            N+AEYEAC+ G                            W                    
Sbjct: 1730 NMAEYEACSMGVQAAIDMKVKKLKVFGDSMLVIHQLRGEWETRDVKLLPYKQFITELSQE 1789

Query: 181  --RISY---------------VVFAMFIVELNE----------EVPAYCLHIEKELDERP 215
               IS+                +  MF +ELNE          +VPA C+ IE+E D +P
Sbjct: 1790 FDEISFDYLPRENNQVADALATLAVMFNLELNEDVRPIKVGRRDVPASCMSIEEEPDGKP 1849

[Close]

BLAST of Clc07G04333 vs. ExPASy TrEMBL
Match: A0A5A7TRL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-59
Identity = 134/330 (40.61%), Postives = 172/330 (52.12%), Query Frame = 0


Query: 1    MNPIKYVFEKPSLSQRIARWQVLLLEYDIVYVTKKAIKGSVLADYLADSPLEDYESRSLD 60
            M+PIKY+FEKPSLS RIA+WQVLL EYDIVYVTKKAIKGS +AD+LA  P+ DYE   +D
Sbjct: 1160 MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAVADHLAAQPVADYEPMRID 1219

Query: 61   FPNESIMTIDEGEEILDLEQWVMLFDEASNELGHGIGAILISPENKLFPLTIKSYFDCTN 120
            FP+++I  +++     D E W MLFD ASNELGHGIG +LISPE K+FPLT K  F+CT+
Sbjct: 1220 FPDDNIFLVEKNAR--DHETWTMLFDGASNELGHGIGVVLISPEGKVFPLTAKLCFECTH 1279

Query: 121  NVAEYEACTSGWRIS-------------------------------YVVFAMFIVELNE- 180
            N+AEYEAC  G R++                                V ++ ++ +L++ 
Sbjct: 1280 NIAEYEACIMGLRVACDMSIKKLKVLGDSMLVIHQVKEEWETRHAKLVPYSQYVTKLSQN 1339

Query: 181  -------------------------------------------EVPAYCLHIEKELDERP 214
                                                       +VPAYC+++    D +P
Sbjct: 1340 FEKISFDHVPREDNRMADALATLAMMFDLNLEFELHPIQITKRDVPAYCMNVGN--DNKP 1399

The following BLAST results are available for this feature:

BLAST of Clc07G04333 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158986.1	7.9e-61	43.50	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022157796.1	1.3e-60	43.81	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]
XP_022150030.1	3.3e-59	42.73	LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]	[more]
XP_022147189.1	4.3e-59	42.60	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
KAA0046213.1	7.4e-59	40.61	uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]	[more]

BLAST of Clc07G04333 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.1e-09	31.68	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.9e-09	30.34	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Clc07G04333 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2J7	3.8e-61	43.50	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1DZ90	6.5e-61	43.81	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]
A0A6J1D7C7	1.6e-59	42.73	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111018303 PE=4 SV=1	[more]
A0A6J1D099	2.1e-59	42.60	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A5A7TRL7	3.6e-59	40.61	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00010...	[more]

BLAST of Clc07G04333 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 352..392
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 169..229 coord: 3..131
None	No IPR available	PANTHER	PTHR24559:SF322	RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEIN	coord: 169..229 coord: 3..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G04333.1	Clc07G04333.1	mRNA