Clc07G04260 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G04260
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Elf4 domain-containing protein
Location	ClcChr07: 4550950 .. 4551339 (+)
RNA-Seq Expression	Clc07G04260
Synteny	Clc07G04260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGATACCAACTCCCGCCGCAAATCCAAAATGAAACCTTCAGCAACCACCACCACTACCACTACAACCACCACCAGCGACGACGGCCAAAACGACGGCTTCCCTGACGAATACGACGCCGAGGTGTGGAACTCCTTTGACCAGACCTTCCGGCAGGTCCAATCCGTGCTGGACCGGAACAGAACACTGATTCAACAGGTAAACGAGAATCACCAATCTCGAATTCCGAGCAACATGGTCGACAACGTTGCTCTCATCCAAGAACTCAATGGAAACATCTCTAAAGTTGTCTCCATGTACTCTGATTTCTCCTCTGATTTCTCCACTGCCTTCCACAACCACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCCAAATGCTTGA

mRNA sequence

ATGGCCGATACCAACTCCCGCCGCAAATCCAAAATGAAACCTTCAGCAACCACCACCACTACCACTACAACCACCACCAGCGACGACGGCCAAAACGACGGCTTCCCTGACGAATACGACGCCGAGGTGTGGAACTCCTTTGACCAGACCTTCCGGCAGGTCCAATCCGTGCTGGACCGGAACAGAACACTGATTCAACAGGTAAACGAGAATCACCAATCTCGAATTCCGAGCAACATGGTCGACAACGTTGCTCTCATCCAAGAACTCAATGGAAACATCTCTAAAGTTGTCTCCATGTACTCTGATTTCTCCTCTGATTTCTCCACTGCCTTCCACAACCACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCCAAATGCTTGA

Coding sequence (CDS)

ATGGCCGATACCAACTCCCGCCGCAAATCCAAAATGAAACCTTCAGCAACCACCACCACTACCACTACAACCACCACCAGCGACGACGGCCAAAACGACGGCTTCCCTGACGAATACGACGCCGAGGTGTGGAACTCCTTTGACCAGACCTTCCGGCAGGTCCAATCCGTGCTGGACCGGAACAGAACACTGATTCAACAGGTAAACGAGAATCACCAATCTCGAATTCCGAGCAACATGGTCGACAACGTTGCTCTCATCCAAGAACTCAATGGAAACATCTCTAAAGTTGTCTCCATGTACTCTGATTTCTCCTCTGATTTCTCCACTGCCTTCCACAACCACAAACCCAGAAATGGCAAAAGAGGCAGCAGCAACCCAAATGCTTGA

Protein sequence

MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNGKRGSSNPNA

Homology

[Close]

BLAST of Clc07G04260 vs. NCBI nr
Match: KAA0031907.1 (protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY FLOWERING 4 [Cucumis melo var. makuwa])

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 120

Query: 121 KRGSSNPNA 130
           KRG++NP+A
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of Clc07G04260 vs. NCBI nr
Match: XP_008463236.2 (PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 3.9e-55
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 189

Query: 121 KRGSSNPNA 130
           KRG++NP+A
Sbjct: 190 KRGTTNPDA 198

[Close]

BLAST of Clc07G04260 vs. NCBI nr
Match: XP_038892867.1 (protein EARLY FLOWERING 4-like [Benincasa hispida])

HSP 1 Score: 221.1 bits (562), Expect = 5.6e-54
Identity = 121/131 (92.37%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSA-TTTTTTTTTTSDDGQNDG-FPDEYDAEVWNSFDQTFRQVQSVL 60
           MAD N RRKSKMKPSA TTTTTTTTTTSDDG +DG FPDEYDAEVW SFDQTFRQVQSVL
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTTSDDGPHDGDFPDEYDAEVWASFDQTFRQVQSVL 60

Query: 61  DRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR 120
           DRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+AF NHKPR
Sbjct: 61  DRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSAFSNHKPR 120

Query: 121 NGKRGSSNPNA 130
           NGKRGS+NPNA
Sbjct: 121 NGKRGSNNPNA 131

[Close]

BLAST of Clc07G04260 vs. NCBI nr
Match: XP_004149248.1 (protein EARLY FLOWERING 4 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 7.3e-54
Identity = 116/129 (89.92%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSKMKPSATTTTTTTTTTSDD  +  FPDEYD EVW SFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRTG 120

Query: 121 KRGSSNPNA 130
           KRG++NP+A
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of Clc07G04260 vs. NCBI nr
Match: KAG6600929.1 (Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031565.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.2 bits (552), Expect = 8.1e-53
Identity = 115/129 (89.15%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSK KPSATTTTTTTTTTSDDG++DGFPDE DA+VW SFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+NHK RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNG 120

Query: 121 KRGSSNPNA 130
           KRGSSNP+A
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of Clc07G04260 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.0e-22
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 40  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYSDFSSDFSTAFHNHKPRNGKRGSSNPNA 130
           MYSD ++ FS+ FH  K  +   G++   A
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGGGAAGTRA 111

[Close]

BLAST of Clc07G04260 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-15
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 40  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D EVW++    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYSDFSSDFSTAFHNHKPRNGKRGSS 126
           +YSD S +F+  F + + R  K G +
Sbjct: 94  IYSDLSLNFAKKF-DQRRRTTKDGDT 118

[Close]

BLAST of Clc07G04260 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-13
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 38  EYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMYSDFSSDFSTAFHNHKPRNGKRGSSN 127
             +Y D S++FS +       +   G  N
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGN 103

[Close]

BLAST of Clc07G04260 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-12
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 34  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFS 110
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

[Close]

BLAST of Clc07G04260 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 34  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF + Y  D ++  +F ++F QVQ +LD+NR LI ++N+NH+S+   ++  NV LI+ELN
Sbjct: 12  GFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNVGLIRELN 71

Query: 94  GNISKVVSMYSDFSSDFS 110
            NI  V S+Y D S  F+
Sbjct: 72  NNIRTVASLYGDLSHSFA 89

[Close]

BLAST of Clc07G04260 vs. ExPASy TrEMBL
Match: A0A5A7SR92 (Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00230 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 120

Query: 121 KRGSSNPNA 130
           KRG++NP+A
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of Clc07G04260 vs. ExPASy TrEMBL
Match: A0A1S3CIT1 (uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.9e-55
Identity = 118/129 (91.47%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSKMKPSATTTTTTTTTTSDD  +D FPDEYDAEVW SFDQTFRQVQSVLDR
Sbjct: 70  MADNNPRRKSKMKPSATTTTTTTTTTSDDPPHDAFPDEYDAEVWASFDQTFRQVQSVLDR 129

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR+G
Sbjct: 130 NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRSG 189

Query: 121 KRGSSNPNA 130
           KRG++NP+A
Sbjct: 190 KRGTTNPDA 198

[Close]

BLAST of Clc07G04260 vs. ExPASy TrEMBL
Match: A0A0A0KM35 (Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.5e-54
Identity = 116/129 (89.92%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSKMKPSATTTTTTTTTTSDD  +  FPDEYD EVW SFDQTFRQVQSVLDR
Sbjct: 1   MADNNPRRKSKMKPSATTTTTTTTTTSDDAPHHAFPDEYDPEVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPR G
Sbjct: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRTG 120

Query: 121 KRGSSNPNA 130
           KRG++NP+A
Sbjct: 121 KRGTTNPDA 129

[Close]

BLAST of Clc07G04260 vs. ExPASy TrEMBL
Match: A0A6J1GYX8 (protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.5e-52
Identity = 114/129 (88.37%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MAD N RRKSK KPSATTTTTTTTTTSDDG++DGFPDE DA+VW SFDQTFRQVQSVLDR
Sbjct: 1   MADINPRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDAQVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+N+K RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNNKSRNG 120

Query: 121 KRGSSNPNA 130
           KRGSSNP+A
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of Clc07G04260 vs. ExPASy TrEMBL
Match: A0A6J1IH33 (protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 4.3e-52
Identity = 113/129 (87.60%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MADTNSRRKSKMKPSATTTTTTTTTTSDDGQNDGFPDEYDAEVWNSFDQTFRQVQSVLDR 60
           MA+ N RRKSK KPSATTTTTTTTTTSDDG++DGFPDE D +VW SFDQTFRQVQSVLDR
Sbjct: 1   MAEINHRRKSKTKPSATTTTTTTTTTSDDGRHDGFPDECDPQVWASFDQTFRQVQSVLDR 60

Query: 61  NRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTAFHNHKPRNG 120
           NR LIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFS+ F+NHK RNG
Sbjct: 61  NRVLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVSMYSDFSSDFSSGFNNHKSRNG 120

Query: 121 KRGSSNPNA 130
           KRGSSNP+A
Sbjct: 121 KRGSSNPDA 129

[Close]

BLAST of Clc07G04260 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-23
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 40  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR+  NM  NVALIQELNGNISKVV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 100 MYSDFSSDFSTAFHNHKPRNGKRGSSNPNA 130
           MYSD ++ FS+ FH  K  +   G++   A
Sbjct: 82  MYSDLNTSFSSGFHGGKNGHDGGGAAGTRA 111

[Close]

BLAST of Clc07G04260 vs. TAIR 10
Match: AT2G29950.1 (ELF4-like 1 )

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-16
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 40  DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKVVS 99
           D EVW++    F++ Q  LD+NR LIQ+VNENH SRIP N+  NV LI E+NGNIS+V+ 
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 100 MYSDFSSDFSTAFHNHKPRNGKRGSS 126
           +YSD S +F+  F + + R  K G +
Sbjct: 94  IYSDLSLNFAKKF-DQRRRTTKDGDT 118

[Close]

BLAST of Clc07G04260 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-14
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 38  EYDAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELNGNISKV 97
           + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+IP N+  NV LI+ELN N+ +V
Sbjct: 15  QMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRNVGLIRELNNNVRRV 74

Query: 98  VSMYSDFSSDFSTAFHNHKPRNGKRGSSN 127
             +Y D S++FS +       +   G  N
Sbjct: 75  AHLYVDLSNNFSKSMEASSEGDSSEGRGN 103

[Close]

BLAST of Clc07G04260 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 34  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFS 110
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

[Close]

BLAST of Clc07G04260 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 34  GFPDEY--DAEVWNSFDQTFRQVQSVLDRNRTLIQQVNENHQSRIPSNMVDNVALIQELN 93
           GF D +  D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+ P N+  NV LI+ELN
Sbjct: 8   GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNVGLIKELN 67

Query: 94  GNISKVVSMYSDFSSDFS 110
            NI +V S+Y D S  F+
Sbjct: 68  NNIRRVASLYGDLSHSFA 85

The following BLAST results are available for this feature:

BLAST of Clc07G04260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031907.1	3.9e-55	91.47	protein EARLY FLOWERING 4 [Cucumis melo var. makuwa] >TYK27472.1 protein EARLY F...	[more]
XP_008463236.2	3.9e-55	91.47	PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]	[more]
XP_038892867.1	5.6e-54	92.37	protein EARLY FLOWERING 4-like [Benincasa hispida]	[more]
XP_004149248.1	7.3e-54	89.92	protein EARLY FLOWERING 4 [Cucumis sativus]	[more]
KAG6600929.1	8.1e-53	89.15	Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7...	[more]

BLAST of Clc07G04260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04211	2.0e-22	61.11	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	4.1e-15	50.00	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]
Q8S8F5	3.8e-13	39.33	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	2.5e-12	46.15	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	7.9e-11	43.59	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]

BLAST of Clc07G04260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SR92	1.9e-55	91.47	Protein EARLY FLOWERING 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CIT1	1.9e-55	91.47	uncharacterized protein LOC103501440 OS=Cucumis melo OX=3656 GN=LOC103501440 PE=...	[more]
A0A0A0KM35	3.5e-54	89.92	Elf4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G202370 PE=3 S...	[more]
A0A6J1GYX8	2.5e-52	88.37	protein EARLY FLOWERING 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458427 PE=...	[more]
A0A6J1IH33	4.3e-52	87.60	protein EARLY FLOWERING 4-like OS=Cucurbita maxima OX=3661 GN=LOC111477159 PE=3 ...	[more]

BLAST of Clc07G04260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40080.1	1.4e-23	61.11	Protein of unknown function (DUF1313)	[more]
AT2G29950.1	2.9e-16	50.00	ELF4-like 1	[more]
AT2G06255.1	2.7e-14	39.33	ELF4-like 3	[more]
AT1G17455.1	1.8e-13	46.15	ELF4-like 4	[more]
AT1G17455.2	1.8e-13	46.15	ELF4-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 39..116 e-value: 2.1E-37 score: 126.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..32
None	No IPR available	PANTHER	PTHR33469:SF5	PROTEIN EARLY FLOWERING 4	coord: 9..123
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 9..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G04260.1	Clc07G04260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0048573	photoperiodism, flowering
biological_process	GO:0042753	positive regulation of circadian rhythm
biological_process	GO:0010017	red or far-red light signaling pathway
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010114	response to red light
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0042803	protein homodimerization activity