Clc07G03120 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc07G03120
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L23, chloroplastic
Location	ClcChr07: 2969562 .. 2970949 (+)
RNA-Seq Expression	Clc07G03120
Synteny	Clc07G03120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCTAAAGGTATGCTCGCATTCTGATATTGTGTTTGTTTCAGCACTAGATGTTCGTTTATTTCAATTTCTGCCTCCGTTTGTTTCAAAAGAAGCTTGGTACCGTAATACGTTCCCAGTATTTGAAGCCTAGTTTCTTAAATCTACTTCTGCTCTGAACTACAAAACCAAGTGCTTGTTGGATGGGATTTTAGTATGATATGGAAGGAGAAGAGTAGTTGATTAAAGCGAATTCTATGTAGGTTTTGCAATTAATTTAGCGTTTTAGATGGAAGAACAACATTTTGAGAAGGTTTAGAGCACTTTTTATATGTGTGAATTGTATTGAATTCATTGGTGGAATCTGAGCTTCTAAACTGCGCTGGGTAGTTTTAAGCTTTTGATTCTGAAGGTTTTTTGTTTTCGTCTTTTGCAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGAAATCCCAAGTATCCCAGAATCAGTGCAACTCCAAGGAATAAGTTGGACCAGTATCAAATTCTGAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAAAATATTAAAGATGCTGTTAAGAAGATGTATGATATCCAGACCAAGAAAGTGAACACTTTAATCAGGTATGCATGGTTCATAAGTTTTGATGAACAGCAATTTAGATTCTACATTTGCTAATTCAGTATTAATCATCTTTTAGAAAGAAACTTGGTATGATACAAAAGAAACAATAGTTCAGGTCATGCTTTCGAACACTGCAGATAAAAATACCTCAACTATAATTTTATTGTTTGGGCCTGATTTTGCTTATTATCTTACTCAACACCTTTAATCTATGTACAAACTATCTATTGATTAATCCATTGTGATGATGAATGATTGATGTTCTAATGTATTTTCCTACATTCCTGGTATGCAGGCCCGACGGAACGAAGAAGGCATACGTTAGGTTAACTCCAGATTATGATGCCCTAGATGTGGCAAACAAGATTGGTATCATCTAAACTGCAGATTTTGGAGCGAGTATTTTCATTGCAATTGGTTACATGTTTAAATTTGGAGAGCATTTTGTAGTAGGACCCTAGTTTTATTTTAGCTTTTTTTTATTTTAATATGTATTGGTATTTGTTCACTCAGATAGACTGGGTTCACAATACTTGGAAGGATGGAATATGCATTCCAACCATTTTCATTATAGTTTGCTTCAGACTCCATTACATCATTACTGA

mRNA sequence

ATGGCACCTAAAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGAAATCCCAAGTATCCCAGAATCAGTGCAACTCCAAGGAATAAGTTGGACCAGTATCAAATTCTGAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAAAATATTAAAGATGCTGTTAAGAAGATGTATGATATCCAGACCAAGAAAGTGAACACTTTAATCAGGCCCGACGGAACGAAGAAGGCATACGTTAGGTTAACTCCAGATTATGATGCCCTAGATGTGGCAAACAAGATTGATAGACTGGGTTCACAATACTTGGAAGGATGGAATATGCATTCCAACCATTTTCATTATAGTTTGCTTCAGACTCCATTACATCATTACTGA

Coding sequence (CDS)

ATGGCACCTAAAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAAGCCTTGAAGACTGCCAAGGCAGTCAAGTCTGGTCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACATCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGAAATCCCAAGTATCCCAGAATCAGTGCAACTCCAAGGAATAAGTTGGACCAGTATCAAATTCTGAAATATCCACTGACCACAGAGTCTGCAATGAAGAAGATTGAGGATAATAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAAAATATTAAAGATGCTGTTAAGAAGATGTATGATATCCAGACCAAGAAAGTGAACACTTTAATCAGGCCCGACGGAACGAAGAAGGCATACGTTAGGTTAACTCCAGATTATGATGCCCTAGATGTGGCAAACAAGATTGATAGACTGGGTTCACAATACTTGGAAGGATGGAATATGCATTCCAACCATTTTCATTATAGTTTGCTTCAGACTCCATTACATCATTACTGA

Protein sequence

MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIDRLGSQYLEGWNMHSNHFHYSLLQTPLHHY

Homology

[Close]

BLAST of Clc07G03120 vs. NCBI nr
Match: XP_004147702.1 (60S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >KAA0050284.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa] >KAE8647979.1 hypothetical protein Csa_000656 [Cucumis sativus] >TYK14757.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa])

HSP 1 Score: 282.7 bits (722), Expect = 2.2e-72
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 150

[Close]

BLAST of Clc07G03120 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 280.0 bits (715), Expect = 1.4e-71
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 150

[Close]

BLAST of Clc07G03120 vs. NCBI nr
Match: XP_038891458.1 (60S ribosomal protein L23a [Benincasa hispida])

HSP 1 Score: 279.3 bits (713), Expect = 2.4e-71
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIK AVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKYAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 150

[Close]

BLAST of Clc07G03120 vs. NCBI nr
Match: KAG6601015.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.9 bits (712), Expect = 3.2e-71
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD+ KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 258 MAPKADTIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 317

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 318 SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 377

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKID 152
           VNTLIRPDGTKKAYVRLTPDYDALDVANKID
Sbjct: 378 VNTLIRPDGTKKAYVRLTPDYDALDVANKID 408

[Close]

BLAST of Clc07G03120 vs. NCBI nr
Match: KAG7031627.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.7 bits (709), Expect = 7.0e-71
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADS KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 33  MAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 92

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 93  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 152

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 153 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 182

[Close]

BLAST of Clc07G03120 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.1e-66
Identity = 137/151 (90.73%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-65
Identity = 135/151 (89.40%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD SKK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+A+KK IKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.6e-64
Identity = 134/151 (88.74%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A  +KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKI 151

[Close]

BLAST of Clc07G03120 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 244.2 bits (622), Expect = 1.1e-63
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-62
Identity = 131/151 (86.75%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. ExPASy TrEMBL
Match: A0A5A7U4W7 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3369G00030 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 150

[Close]

BLAST of Clc07G03120 vs. ExPASy TrEMBL
Match: A0A0A0KS61 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 60  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 119

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 120 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 179

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 180 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 209

[Close]

BLAST of Clc07G03120 vs. ExPASy TrEMBL
Match: A0A1S3CFM9 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 149/150 (99.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 150

[Close]

BLAST of Clc07G03120 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 6.9e-72
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 150

[Close]

BLAST of Clc07G03120 vs. ExPASy TrEMBL
Match: A0A6J1DJ76 (50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021582 PE=3 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.4e-71
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKAD++KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           VNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKI 150

[Close]

BLAST of Clc07G03120 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 244.2 bits (622), Expect = 8.0e-65
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 244.2 bits (622), Expect = 8.0e-65
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 240.7 bits (613), Expect = 8.9e-64
Identity = 131/151 (86.75%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 240.7 bits (613), Expect = 8.9e-64
Identity = 131/151 (86.75%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151

[Close]

BLAST of Clc07G03120 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-60
Identity = 127/151 (84.11%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 151
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKI
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKI 145

The following BLAST results are available for this feature:

BLAST of Clc07G03120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147702.1	2.2e-72	99.33	60S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribo...	[more]
XP_022995723.1	1.4e-71	98.67	60S ribosomal protein L23a [Cucurbita maxima]	[more]
XP_038891458.1	2.4e-71	98.67	60S ribosomal protein L23a [Benincasa hispida]	[more]
KAG6601015.1	3.2e-71	97.35	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7031627.1	7.0e-71	98.00	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Clc07G03120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT35	4.1e-66	90.73	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q07761	3.5e-65	89.40	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
O22644	6.6e-64	88.74	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	1.1e-63	87.42	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
Q9M3C3	1.2e-62	86.75	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]

BLAST of Clc07G03120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4W7	1.1e-72	99.33	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KS61	1.1e-72	99.33	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180...	[more]
A0A1S3CFM9	1.1e-72	99.33	50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191...	[more]
A0A6J1K8U2	6.9e-72	98.67	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A6J1DJ76	3.4e-71	97.33	50S ribosomal protein L23, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Clc07G03120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	8.0e-65	87.42	ribosomal protein L23AA	[more]
AT2G39460.2	8.0e-65	87.42	ribosomal protein L23AA	[more]
AT3G55280.1	8.9e-64	86.75	ribosomal protein L23AB	[more]
AT3G55280.2	8.9e-64	86.75	ribosomal protein L23AB	[more]
AT3G55280.3	2.0e-60	84.11	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 34..153 e-value: 7.0E-52 score: 176.6
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 14..62 e-value: 3.8E-18 score: 65.4
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 73..134 e-value: 4.0E-15 score: 55.9
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 1..150
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 73..153 score: 21.305328
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR11620:SF81	RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATED	coord: 1..150
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 131..146
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 71..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc07G03120.2	Clc07G03120.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome