Clc06G17960 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G17960
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DUF4228 domain-containing protein
Location	ClcChr06: 28440008 .. 28442500 (-)
RNA-Seq Expression	Clc06G17960
Synteny	Clc06G17960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATTCATTATGAACCAAATAAAAATAAAAATGTAAGAAGGAAAAATGCATTTTCTCCCATAAATATATGAAATCTCGACCTCCTCATGACTAATATTAGAATAAAGAAATTCAATGAAAGATGAAAATTGAAAAGGATAGCAATAGAAAAAAGAGAGACAAAAACTGACAGTGGGCTTCCTACCACTTGAAGAACACACTTGATTTTTTTTTTCTTTGGTTCCAAAATCAACAGCCACAGCATGGCAACTTTTTCTGTCAAATCTTACAATCTCAATGATATTGGCAAATGCCTGCCAAGAATTATACACAAACGTGTTCTGTAATCGCCGTTTTCAAATCATCTTATTACACTTTACGATTCTTCTCGGTAAGGTTTCTATTTTTATTTTTTCTTTGTCGCATTAATCTTATGCTTTTCTATAGATTATAATATTAGGGTTTCATTTTTCTCGATCGATTAAACAAGCCCAACAATGTTTGTTGTTAAGTACGATTATAATGCTTAAGAAAATCCTTCAATTAGTAGCCAAAAAAAAAAAAAAAAAAAAGAAAAGAAAGAAAACCAGAAGAAGAAGAAGAAGCTTTTTGGATGGTAAGGCTGAGTTAGATGGAAGCTTTAGGGAAAAGGGTAAATTTCCTTTTTGAAAGGGGAATGGTTTGTAATGAATAGAAAGAGCTTGTAATGTAATACACAACCAAAAAAGTAAAAGATGAACACCCTTTGATGGGACACCACTCATTGTACTGTTGCTTAGGGCTTTTTTGTTTTTCTCAAGCTTGGTTGTTTCGTTCTTGGAGATATGGAATTCATGAATTTATCTCTAATTGCTTTATTAAGATTAGTTTTACCCTTTTGAAAGAAAATTCTAATTATCTATAGTGAAGGAGATCAGATGGATTAATGGATTGGGATTTGGAGGTACCCACAAGATTTTTCACCTCCAATTTTGGTTTGTTTTCTTGTGGGCTACTTGAAAATGAAAACTACTCTCAGTTGTGTAATCCAAGGAGAACCACTAGAAGTAGAAGATTCAAGTCTCTGTTTTTCTTTTTGGTGTTGTGGGAAATATTTGACATTTTCTGTAGGAAAATTTTGTCTTCTTTGTGGTCCTGTGGAATCATAACTTTGAGAGCATGACATTCAAAATGTATCCATCCCCATTTCATTTATTAATATTCATATATTCTTTTTCATTTACAAAGTGGTGGTCTCAATTTGAATTGATGTGTGTTTTGGGGGGTGGGTTATAAAAAAATACCCAAATGAAAAGAGAAATTATTGGGGTTGAAGAGAAAGAGAAGTGATGAGAGAGAATGTATTCATTATGTAATGTATATATCAAGACTTGAAGCTGTAATTTCACCTTTGGCACCAGATCCTCTGTTCCTCTACCCACCCAATCATAGCTCACCACCTCATAACTTGTTGGACAATCTTGCCCCTCTTTATCACCTGAGTGAGTAGCTCTTTTTACCCTCAAAGATCTATTAAACAGATAAGAATTTTTAAGGCTGCTGGTGAATGAGTGTCTCTTAAGTGGCTATAAAAAAAGATTGGTCCTCTCTTCACAGCCTCCTCTCTTGCTTGCTCATTATCCTCATCTCCCACAATTTCATTACCATCAGAGAGAAAGAGAGAGTGACAGAGAGATGGGAAATTGCCAAGCCATTGATGCGGCAACACTTGTGATACAACACCCAAGTGGGAAAGAAGACAAATTGTATTGGCCTGTGACTGCTAGAGAGATCATGAAGATGAATCCTGGTCATTATGTTGCTCTTCTTATCTCTACTACCATGTTTACACCCAATGAAAGTAATAACAACAATGAAACAAGCAAAGAAACAAGCAGCAATTCGGTTCGTTTAACTCGAATCAAGCTTCTCCGCCCAGCTGACATGCTTGTTCTTGGTCAAGTTTACAGGCTCATCACAACTCAAGGTCAGTTTTATCTACCTTTCTTCCTCTTGTTTCTGTCTGTTTTGTTTGCAACCCATAAAACTCTTGACATATCTCTTAAGAGTTTTTTAGGCTTAAACTTGAATTAATGGCTTCATTTTCTTTTATGGGTTTCAGAAGTCATGAAAGGTTTATCAGCAAAGAAACAAGCAAAGGTTAAACAAAGTCAGTTAGAAGCAGCTGATAAGCCAGAGAGGAGGAAAGAACGTACAACCAGAGGCTCAGATGCAGCAGCAGCAGCTGGAAGATCTGTATCTGAAGATCATATTCAGGTGAATTTTTTTAACAAACATCAAAAGAATTCTTAACTTTTGAAGGACGGACGTTTTTAGAACAAATGTTGTCTCTATTTTCAATTGGAGTTAAAAACAGAATTCTTTCTAAATGAATTGCACAACTTTTTCTAGGCGACCAAACATGAGAAAAACAACCGACCAAGGACAAGTAGTACATCGACTAACTCGGCCACATCCAGATCAAGAACATGGCAACCTTCATTACATAGCATCTCAGAAGCTGGAAGCTAA

mRNA sequence

AAAAAATTCATTATGAACCAAATAAAAATAAAAATGTAAGAAGGAAAAATGCATTTTCTCCCATAAATATATGAAATCTCGACCTCCTCATGACTAATATTAGAATAAAGAAATTCAATGAAAGATGAAAATTGAAAAGGATAGCAATAGAAAAAAGAGAGACAAAAACTGACAGTGGGCTTCCTACCACTTGAAGAACACACTTGATTTTTTTTTTCTTTGGTTCCAAAATCAACAGCCACAGCATGGCAACTTTTTCTGTCAAATCTTACAATCTCAATGATATTGGCAAATGCCTGCCAAGAATTATACACAAACGTGTTCTGTAATCGCCGTTTTCAAATCATCTTATTACACTTTACGATTCTTCTCGAGAGAAAGAGAGAGTGACAGAGAGATGGGAAATTGCCAAGCCATTGATGCGGCAACACTTGTGATACAACACCCAAGTGGGAAAGAAGACAAATTGTATTGGCCTGTGACTGCTAGAGAGATCATGAAGATGAATCCTGGTCATTATGTTGCTCTTCTTATCTCTACTACCATGTTTACACCCAATGAAAGTAATAACAACAATGAAACAAGCAAAGAAACAAGCAGCAATTCGGTTCGTTTAACTCGAATCAAGCTTCTCCGCCCAGCTGACATGCTTGTTCTTGGTCAAGTTTACAGGCTCATCACAACTCAAGAAGTCATGAAAGGTTTATCAGCAAAGAAACAAGCAAAGGTTAAACAAAGTCAGTTAGAAGCAGCTGATAAGCCAGAGAGGAGGAAAGAACGTACAACCAGAGGCTCAGATGCAGCAGCAGCAGCTGGAAGATCTGTATCTGAAGATCATATTCAGGCGACCAAACATGAGAAAAACAACCGACCAAGGACAAGTAGTACATCGACTAACTCGGCCACATCCAGATCAAGAACATGGCAACCTTCATTACATAGCATCTCAGAAGCTGGAAGCTAA

Coding sequence (CDS)

ATGCCTGCCAAGAATTATACACAAACGTGTTCTGTAATCGCCGTTTTCAAATCATCTTATTACACTTTACGATTCTTCTCGAGAGAAAGAGAGAGTGACAGAGAGATGGGAAATTGCCAAGCCATTGATGCGGCAACACTTGTGATACAACACCCAAGTGGGAAAGAAGACAAATTGTATTGGCCTGTGACTGCTAGAGAGATCATGAAGATGAATCCTGGTCATTATGTTGCTCTTCTTATCTCTACTACCATGTTTACACCCAATGAAAGTAATAACAACAATGAAACAAGCAAAGAAACAAGCAGCAATTCGGTTCGTTTAACTCGAATCAAGCTTCTCCGCCCAGCTGACATGCTTGTTCTTGGTCAAGTTTACAGGCTCATCACAACTCAAGAAGTCATGAAAGGTTTATCAGCAAAGAAACAAGCAAAGGTTAAACAAAGTCAGTTAGAAGCAGCTGATAAGCCAGAGAGGAGGAAAGAACGTACAACCAGAGGCTCAGATGCAGCAGCAGCAGCTGGAAGATCTGTATCTGAAGATCATATTCAGGCGACCAAACATGAGAAAAACAACCGACCAAGGACAAGTAGTACATCGACTAACTCGGCCACATCCAGATCAAGAACATGGCAACCTTCATTACATAGCATCTCAGAAGCTGGAAGCTAA

Protein sequence

MPAKNYTQTCSVIAVFKSSYYTLRFFSRERESDREMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNNETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAADKPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSLHSISEAGS

Homology

[Close]

BLAST of Clc06G17960 vs. NCBI nr
Match: XP_004138125.1 (uncharacterized protein LOC101211887 [Cucumis sativus] >KGN63604.1 hypothetical protein Csa_013313 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-84
Identity = 178/189 (94.18%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
           +TS ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 156 KPERRKERTTRGSD-AAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPS 215
           KP+RRK+RTTR SD AAAAAGRSVSED IQA KHEKNNRPRT STST SAT+RSRTWQPS
Sbjct: 121 KPDRRKQRTTRSSDAAAAAAGRSVSEDQIQANKHEKNNRPRT-STSTTSATARSRTWQPS 180

Query: 216 LHSISEAGS 224
           LHSISEAGS
Sbjct: 181 LHSISEAGS 188

[Close]

BLAST of Clc06G17960 vs. NCBI nr
Match: XP_038880684.1 (uncharacterized protein LOC120072302 [Benincasa hispida])

HSP 1 Score: 321.6 bits (823), Expect = 5.3e-84
Identity = 175/188 (93.09%), Postives = 179/188 (95.21%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESN NN
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNKNN 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
               ET++NSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  ----ETTNNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
           KP+RRKERTTR SDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTST S  +RSRTWQPSL
Sbjct: 121 KPDRRKERTTRSSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTTSTIARSRTWQPSL 180

Query: 216 HSISEAGS 224
           HSISEAGS
Sbjct: 181 HSISEAGS 184

[Close]

BLAST of Clc06G17960 vs. NCBI nr
Match: KAA0057887.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 5.3e-84
Identity = 177/193 (91.71%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 31  ESDREMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNE 90
           + + EMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNE
Sbjct: 59  QRELEMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNE 118

Query: 91  SNNNNETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQ 150
           SNN+N+TS ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQ
Sbjct: 119 SNNSNQTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQ 178

Query: 151 LEAADKPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRT 210
           LEAADKP+RRKERTTR SD  AAAGRSVSED IQA KHEKNNRPRT STST SAT+RSRT
Sbjct: 179 LEAADKPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRT-STSTTSATARSRT 238

Query: 211 WQPSLHSISEAGS 224
           WQPSLHSISEAGS
Sbjct: 239 WQPSLHSISEAGS 248

[Close]

BLAST of Clc06G17960 vs. NCBI nr
Match: XP_008453120.1 (PREDICTED: uncharacterized protein LOC103493930 [Cucumis melo] >TYK14940.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 2.6e-83
Identity = 176/188 (93.62%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN+N
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
           +TS ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
           KP+RRKERTTR SD  AAAGRSVSED IQA KHEKNNRPRT STST SAT+RSRTWQPSL
Sbjct: 121 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRT-STSTTSATARSRTWQPSL 180

Query: 216 HSISEAGS 224
           HSISEAGS
Sbjct: 181 HSISEAGS 185

[Close]

BLAST of Clc06G17960 vs. NCBI nr
Match: XP_022965769.1 (uncharacterized protein LOC111465553 isoform X2 [Cucurbita maxima])

HSP 1 Score: 297.7 bits (761), Expect = 8.1e-77
Identity = 179/232 (77.16%), Postives = 187/232 (80.60%), Query Frame = 0


Query: 10  CSVIAVFKSSYYTLRFFSRERESDREMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIM 69
           C  I +F  S+      SRERE  REMGNCQAIDAATLVIQHPSGK DKLYWPVTAREIM
Sbjct: 23  CLFIILFSHSFIP----SRERE--REMGNCQAIDAATLVIQHPSGKVDKLYWPVTAREIM 82

Query: 70  KMNPGHYVALLISTTMFTPNESNNNNETSK----------------ETSSNSVRLTRIKL 129
           KMNPGHYVALLISTTM TPNES+NNNETSK                E SSNSVRLTRIKL
Sbjct: 83  KMNPGHYVALLISTTMVTPNESSNNNETSKVEKKENEARKVEKKENEGSSNSVRLTRIKL 142

Query: 130 LRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAADKPERRKERTTRGSDAA-- 189
           LRPAD LVLGQVYRLIT++EVM GLSAKKQAKVKQSQLEAA+K  RRKER  RGSD+A  
Sbjct: 143 LRPADTLVLGQVYRLITSKEVMSGLSAKKQAKVKQSQLEAAEKAGRRKERAARGSDSAAT 202

Query: 190 AAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSLHSISEAGS 224
           AAAGRSVSED  QATKHEKNNRPRT STST SA +RSRTWQPSLHSISEAGS
Sbjct: 203 AAAGRSVSEDPFQATKHEKNNRPRT-STSTTSAIARSRTWQPSLHSISEAGS 247

[Close]

BLAST of Clc06G17960 vs. ExPASy TrEMBL
Match: A0A0A0LRI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005650 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.7e-85
Identity = 178/189 (94.18%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
           +TS ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 156 KPERRKERTTRGSD-AAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPS 215
           KP+RRK+RTTR SD AAAAAGRSVSED IQA KHEKNNRPRT STST SAT+RSRTWQPS
Sbjct: 121 KPDRRKQRTTRSSDAAAAAAGRSVSEDQIQANKHEKNNRPRT-STSTTSATARSRTWQPS 180

Query: 216 LHSISEAGS 224
           LHSISEAGS
Sbjct: 181 LHSISEAGS 188

[Close]

BLAST of Clc06G17960 vs. ExPASy TrEMBL
Match: A0A5A7UT51 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001870 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.5e-84
Identity = 177/193 (91.71%), Postives = 183/193 (94.82%), Query Frame = 0


Query: 31  ESDREMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNE 90
           + + EMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNE
Sbjct: 59  QRELEMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNE 118

Query: 91  SNNNNETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQ 150
           SNN+N+TS ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQ
Sbjct: 119 SNNSNQTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQ 178

Query: 151 LEAADKPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRT 210
           LEAADKP+RRKERTTR SD  AAAGRSVSED IQA KHEKNNRPRT STST SAT+RSRT
Sbjct: 179 LEAADKPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRT-STSTTSATARSRT 238

Query: 211 WQPSLHSISEAGS 224
           WQPSLHSISEAGS
Sbjct: 239 WQPSLHSISEAGS 248

[Close]

BLAST of Clc06G17960 vs. ExPASy TrEMBL
Match: A0A5D3CU41 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25242G00010 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.3e-83
Identity = 176/188 (93.62%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN+N
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
           +TS ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
           KP+RRKERTTR SD  AAAGRSVSED IQA KHEKNNRPRT STST SAT+RSRTWQPSL
Sbjct: 121 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRT-STSTTSATARSRTWQPSL 180

Query: 216 HSISEAGS 224
           HSISEAGS
Sbjct: 181 HSISEAGS 185

[Close]

BLAST of Clc06G17960 vs. ExPASy TrEMBL
Match: A0A1S3BVG8 (uncharacterized protein LOC103493930 OS=Cucumis melo OX=3656 GN=LOC103493930 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.3e-83
Identity = 176/188 (93.62%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNN+N
Sbjct: 1   MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNSN 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
           +TS ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD
Sbjct: 61  QTSNETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
           KP+RRKERTTR SD  AAAGRSVSED IQA KHEKNNRPRT STST SAT+RSRTWQPSL
Sbjct: 121 KPDRRKERTTRSSD--AAAGRSVSEDQIQANKHEKNNRPRT-STSTTSATARSRTWQPSL 180

Query: 216 HSISEAGS 224
           HSISEAGS
Sbjct: 181 HSISEAGS 185

[Close]

BLAST of Clc06G17960 vs. ExPASy TrEMBL
Match: A0A6J1HRW5 (uncharacterized protein LOC111465553 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111465553 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.9e-77
Identity = 179/232 (77.16%), Postives = 187/232 (80.60%), Query Frame = 0


Query: 10  CSVIAVFKSSYYTLRFFSRERESDREMGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIM 69
           C  I +F  S+      SRERE  REMGNCQAIDAATLVIQHPSGK DKLYWPVTAREIM
Sbjct: 23  CLFIILFSHSFIP----SRERE--REMGNCQAIDAATLVIQHPSGKVDKLYWPVTAREIM 82

Query: 70  KMNPGHYVALLISTTMFTPNESNNNNETSK----------------ETSSNSVRLTRIKL 129
           KMNPGHYVALLISTTM TPNES+NNNETSK                E SSNSVRLTRIKL
Sbjct: 83  KMNPGHYVALLISTTMVTPNESSNNNETSKVEKKENEARKVEKKENEGSSNSVRLTRIKL 142

Query: 130 LRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAADKPERRKERTTRGSDAA-- 189
           LRPAD LVLGQVYRLIT++EVM GLSAKKQAKVKQSQLEAA+K  RRKER  RGSD+A  
Sbjct: 143 LRPADTLVLGQVYRLITSKEVMSGLSAKKQAKVKQSQLEAAEKAGRRKERAARGSDSAAT 202

Query: 190 AAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSLHSISEAGS 224
           AAAGRSVSED  QATKHEKNNRPRT STST SA +RSRTWQPSLHSISEAGS
Sbjct: 203 AAAGRSVSEDPFQATKHEKNNRPRT-STSTTSAIARSRTWQPSLHSISEAGS 247

[Close]

BLAST of Clc06G17960 vs. TAIR 10
Match: AT5G50090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 139.8 bits (351), Expect = 2.6e-33
Identity = 93/188 (49.47%), Postives = 113/188 (60.11%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQA+D A +VIQHP+GKE+KL  PV+A  +MKMNPGH V+LLISTT  +   S +  
Sbjct: 1   MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGH-- 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
                     +RLTRIKLLRP D LVLG VYRLITT+EVMKGL AKK +K+K+    + D
Sbjct: 61  -------GGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDD 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
           K E  K   +   D         +ED +Q  K EK              +  SR+WQPSL
Sbjct: 121 KLEMVKAINSTKLD---------NEDQLQMKKQEKER------------SRISRSWQPSL 158

Query: 216 HSISEAGS 224
            SISE GS
Sbjct: 181 QSISEGGS 158

[Close]

BLAST of Clc06G17960 vs. TAIR 10
Match: AT1G60010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10530.1); Has 185 Blast hits to 185 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-32
Identity = 91/188 (48.40%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQA+DAA LV+QHP GK D+ Y PV+  EIM+M PGHYV+L+I   +   N      
Sbjct: 1   MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLII--PLPEKNIPATTT 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
            T  ++    VR TR+KLLRP + LVLG  YRLIT+QEVMK L AKK AK K+ Q E + 
Sbjct: 61  TTDDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSETS- 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
             E++K  + +  D  +   +++       TK EK       S  TNSA+SRS+TW+PSL
Sbjct: 121 -KEKKKPSSEKKIDEESDKNQNLE------TKDEKQR-----SVLTNSASSRSKTWRPSL 173

Query: 216 HSISEAGS 224
            SISEA S
Sbjct: 181 QSISEATS 173

[Close]

BLAST of Clc06G17960 vs. TAIR 10
Match: AT5G50090.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 1.9e-31
Identity = 90/188 (47.87%), Postives = 111/188 (59.04%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQA+D A +VIQHP+GKE+KL  PV+A  +MKMNPGH V+LLISTT  +   S +  
Sbjct: 1   MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGH-- 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
                     +RLTRIKLLRP D LVLG VYRLITT+EVMKGL AKK +K+K+    + D
Sbjct: 61  -------GGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDD 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
           K E  K                     I +TK +  ++ +  S         SR+WQPSL
Sbjct: 121 KLEMVKA--------------------INSTKLDNEDQEKERSRI-------SRSWQPSL 152

Query: 216 HSISEAGS 224
            SISE GS
Sbjct: 181 QSISEGGS 152

[Close]

BLAST of Clc06G17960 vs. TAIR 10
Match: AT5G62900.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 81/188 (43.09%), Postives = 107/188 (56.91%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQA +AAT VIQ P GK  + Y  V A E++K +PGH+VALL+S+ +          
Sbjct: 1   MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSSAV---------- 60

Query: 96  ETSKETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLEAAD 155
                    S+R+TRIKLLRP+D L+LG VYRLI+++EVMKG+ AKK  K+K+   E + 
Sbjct: 61  -----PHGGSLRVTRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKSGKMKKIHGEFSV 120

Query: 156 KPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQPSL 215
             E     T R          S S+   Q   HEK    +    +T  AT++ R WQPSL
Sbjct: 121 AEEEINPLTLR--------SESASDKDTQRRIHEK----QRGMMNTGGATNKVRAWQPSL 161

Query: 216 HSISEAGS 224
            SISE+ S
Sbjct: 181 QSISESTS 161

[Close]

BLAST of Clc06G17960 vs. TAIR 10
Match: AT1G10530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60010.1); Has 143 Blast hits to 143 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 113.6 bits (283), Expect = 2.0e-25
Identity = 82/191 (42.93%), Postives = 107/191 (56.02%), Query Frame = 0


Query: 36  MGNCQAIDAATLVIQHPSGKEDKLYWPVTAREIMKMNPGHYVALLISTTMFTPNESNNNN 95
           MGNCQA++AA LV+QHP G  D+ Y  V+  E+M M PGHYV+L+I     +  E  N  
Sbjct: 1   MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIP---LSEEEEKNIP 60

Query: 96  ETSK---ETSSNSVRLTRIKLLRPADMLVLGQVYRLITTQEVMKGLSAKKQAKVKQSQLE 155
            T K   +    +VR TR++LLRP + LVLG  YRLIT+QEVMK L  KK AK K+ Q+ 
Sbjct: 61  ATEKGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLREKKSAKTKKHQI- 120

Query: 156 AADKPERRKERTTRGSDAAAAAGRSVSEDHIQATKHEKNNRPRTSSTSTNSATSRSRTWQ 215
                    E+TT          +  S+  +   K  K  R   +STS      +S+TW+
Sbjct: 121 ---------EKTT--------TAKKFSDKKVPEKKQGKQFRVIRNSTS----LLKSKTWR 166

Query: 216 PSLHSISEAGS 224
           PSL SISEA S
Sbjct: 181 PSLQSISEATS 166

The following BLAST results are available for this feature:

BLAST of Clc06G17960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138125.1	1.8e-84	94.18	uncharacterized protein LOC101211887 [Cucumis sativus] >KGN63604.1 hypothetical ...	[more]
XP_038880684.1	5.3e-84	93.09	uncharacterized protein LOC120072302 [Benincasa hispida]	[more]
KAA0057887.1	5.3e-84	91.71	DUF4228 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_008453120.1	2.6e-83	93.62	PREDICTED: uncharacterized protein LOC103493930 [Cucumis melo] >TYK14940.1 DUF42...	[more]
XP_022965769.1	8.1e-77	77.16	uncharacterized protein LOC111465553 isoform X2 [Cucurbita maxima]	[more]

BLAST of Clc06G17960 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G17960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRI4	8.7e-85	94.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G005650 PE=4 SV=1	[more]
A0A5A7UT51	2.5e-84	91.71	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CU41	1.3e-83	93.62	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BVG8	1.3e-83	93.62	uncharacterized protein LOC103493930 OS=Cucumis melo OX=3656 GN=LOC103493930 PE=...	[more]
A0A6J1HRW5	3.9e-77	77.16	uncharacterized protein LOC111465553 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Clc06G17960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G50090.1	2.6e-33	49.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT1G60010.1	2.2e-32	48.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G50090.2	1.9e-31	47.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G62900.1	1.1e-26	43.09	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT1G10530.1	2.0e-25	42.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 36..220 e-value: 3.0E-30 score: 106.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..167
None	No IPR available	PANTHER	PTHR33413	EXPRESSED PROTEIN	coord: 36..223
None	No IPR available	PANTHER	PTHR33413:SF28	DUF4228 DOMAIN PROTEIN	coord: 36..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G17960.1	Clc06G17960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane