Clc06G16780 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G16780
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glycine-rich RNA-binding protein 2
Location	ClcChr06: 27505051 .. 27509993 (+)
RNA-Seq Expression	Clc06G16780
Synteny	Clc06G16780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAAAATTGGGAGGAAATATAGGGTTGTTTTCAAACGTGGGAAAATGAGTCAAACTATTTACAATTATAGAAAAAAAATTATTGTCTATCAACGACAGACCACGATAGACTTCTATAACTAGATAGAAGTATATAACTGACAACATAATTTTCTATATTTATATATTTATAAATAGTTTGATATTTTTTATGTTTATAATAATTTTTAGAAAATGTACTTAATTTTTTTAAAATAAACGATTGTCAAAAGTATTGTAAAATGGGAATAAAAAATATATATATATAGATATGAACACAAGAGATAAATTGAGATAATAAACTAGAGAACATATATATTAGTCTCAACTGAGATGTGTTTACAAACGATACATAAATATTAGTAACCAGTAATCAAACATAAATTGAATTTGTAACCTAGGGAGGTTATGGAAATTTATATAACGGTAATATTTATAACAAAAATAAGTTTTTTATTTTTAGTTTTTTTTCATAAATTAAGTCTAAGTTTTGAGAAAATTTTCAAAAACTTTATTAAGAATTCAACTCTTCTGCTGAGATAAAACTGTGATAAGAAATTGAAAGAAAATAAATACAACTTTCTAAAATTAAAAAAAAAAAAAAGAAAGCAAAATAATTAAGGCTCTTTTCAAATCGCACCTTGACTAACTCGCCTGACCCTATAACCCAAACACATGACCCCTTAACCTTTGGTCTTTTTTTGATGTTGGCACTACCACTAGACCTAATTCTTAAATTTACAAATCAATGAACATTAACTAGGTGGAAGAGAAAGGAGAAGACCATTATTCTAGAGGTTTAAGAAATTTCTCAAGAGTCAAGCAATTCGAGAAAGTGGCAAAGAATGATTTTAGTGTATTTTTTTTTCACTTTTCAATTTTGTAAACATATATAATGATTTATTATTTGTTTAATATGCTTTTGTAGTTTTCTTTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTTTCATTTTTTAAGTCTGTAAACCCACATAAAGGGTTTCTTTAAAAATGTTTTTGTATTTTTTTTTTCTCCCGAGAAAAGTATCATAAAAAATATGGATTTTAGGGTTTGCTTGCAAAGTAAAATAATATTGGGTATAAATTAAAAGTTAAAAACTCTGCTAATATGGGAAAAAAAATTGGATTTTTAGGATTTTACACGCAGAGAAAAACAATATTTTGGAATTAATTAAATTTTAAAAAATACTTTAAATTAAAAAGATAATAAATCATCCCGATAAAATTAAAACACAAATCAAACGAATTGTATATTATACGAAAATCTTAATAAATCATCCAAATCAAAAGAATCTTATATCATATCTACAAATGAAGTAATTTAAAATATTTTCGTTTACCTAATCTTGAAAATTAAGATTTTTGTAACCATAATAAAAATATTATAATTATTATTATTTTAATTACTATACCATTATTCCATATTTACAAAAACAAATCAAATTTATTTCAAAATTTTAAAAATTAAATGATTAATACGAAAGTTTTTAAAATATCCTAATTTACAATTAGATTACCGTAATTAAAGTTTAAAATATATGAGATAGTTTTAAATAGAAGATGTAAGAAATCAAATGATATAAAATGAAATAAAATATTAAAATTAAATAGATAATCAAACTAAAAATTAATAATTTGAAGATGTAGGCACTTTTCTAATGTTTTATTTATATTATTTTAATAATATAATATATTTGTGTTATTAATAGTTTATTTAAAACGGTAGTTAATCAATTACTTAATTATAAACTTAAATTTAATTCAAAATTAATTTAAACTCATACCTATACTTTTAAACTTACATATTAAAGTTTATAAAACACATACAATGTATATACTAAAATGAGTTAACTTATTTATAAATATAACAAAATATTATTGTGATAGATGTAGATAACATTTATAAATATTAAGCGGTTCTAAATAATTAGTATAGGAGTCCTAAATTATTTGAATTGAACAAAATGATTAATCTTACAAAATTAGGGTAATTTTGAAATTTGTCCAAAAGTTGAAATCACATGGCCAAGATATTTTTTTCGCGTCCCTAATTTGGACCGTCATCAATTGATCCGACGGCCAGGATTTCTCCTGCTTCGCTCAATAGATTTCTCTTCACTTCTCATACTCTTTAAAGGAACCCGACTGATCGGTAAGACCCTCTAGGGTTTTAGCATCGCGAGGGAGGTGAAGAAGAACAAGGTCTGTTCTCCACTCAGTCCTTCGTCTCTGTCTGTTTCTTTTCCTTGCCCTTTCTTTTGCTATTTGTATATGATTTCCCTATTGTATTTCTTCCAAAATCGTTGAAAATGGTCGCACTAGATACTTGATCGATGGGTTTTTACTATTATTTGAGGTATTTTCCGGGTTTTAGGATTTGGTAACTGGAGGAAATAATAGCAGAAAATAGGCGATGAGTCTTTTCTCTCTCAACTTTTACGTATTCGAACTCTTCATCACGGACTGTTTTTCGTTTGCGTCTTGTTCTGGTTATTGGGTTTCATTTCTTGCGGTATATAAACTAGTCTCGGTGGTAGGGATCACCCTGTTGTGATTGAAATGTTCCCATTAACCACCAAAACAGAGCTTATGCCTATAGGGATAGTTATGAACGTTATTACGTACACACGTACTGCATTTCACTCATCGCCAGTGTTTGACTTCTTACACTCTCCTGTTTAGTTGTTTTTGGTATGTTCTGGCAATGAGATTGTGAAGAAGTGTGTTGCGACAGTGTTATGGGTACTTAATTTGTCGAAAACCGAAGCGTGTAACTTCGAGTCATTTTTGCCTCTGATACCTTGGTTGGTTGATTATTCGTCATTTATTTCTTTCAGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCAGCCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGTTCTCTGAGAATGCTTTGTTATTCTTGTTATTTTTTTCCTTTAAAGAACGTGTATACGCCAATTTCTTTGTCCTTATCATGTGCTTGTATGTACGTTTGGCAGGAATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGGTATATCACCCAACTCATTTACAACGAGTGTTGGAGGTTATCTTTGAAGTATATTTGTTTTCAATTTTTATCTTATCTATTCTATATGTAACATAAATGAAATATGGAATAAACGAGCTTTTGGAACCCATATGGTCAAATCTGCTCGAGCAATTATGTCTCTTTTAAATATTTTCTGAAATAAGGCCCAGCAGGTGGCTTGAGGTAGTGTTGCGCTTGATTCTGCTTGTTGTGCTAGCGGATTGTGAAGTTTTAGTTATAAATGTTGGTTTCCTTGTTTACCCTTCTTTTCTTTGCCATGGCGATAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGTAATGATTCTGCTATTGACTCATTGAGATTAAAAAGGACAAAACGTTGTGTTATATTCATACGCTGCAATATACTGTAGAATTAATGCATCATCGCTCATAAAATGCTTGATGTCCGTTGTCTGCGTTCTTTTCTGTTAGATGATCCTGCCACTGTGTTACTTGTATGAAGAAGACTATCTAGTGAATGTCTTTATGTTAATTGATCTTATGTAAATGTCTTCATGTAATACCTTAAATCATCATATTTCCTGCAGCAAATATTAGTATGATGCAGTGATATTGAGATATAGTAGCCCATTCTCTGTACGGTCAACAGTTAATATGTGTACTAATGTAAAGTGTTTTAGGGGTTGTCATGTGTGATAAAGGTGAGTTGTATGTTGGAGGTTTGTCCCAAATTTCGTTCATGTTATAGCACAGCCGTTCTACTTATATTCTCAACTAGCTTGTATGTTATGGTACTAAATTTCCATTTAGATTTTTGTAGGAAAATAATTATTTAAAGCGATATGAGTGATTAAGATGTGTGGAATTTGGAGGCTTGTTCCACTTTCGAATACATGAGAACAAATCATATTTAAACTGACTGACTTATTATCGAGATTCATTCTTCATAATTTAATTTGGTCCTCAATATTTGCTAAAAAGCTCAATGTCTCAGGTTAATTATGTTTTTTTTTTCCTTCTTTAAACAGGACCTTCATGGTCGTCAAGTGAGAGTGAATTATGCTAATGATAGATCTCGTGGTTTCGGTGGCGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCGAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGGTGGTGGCTTTGGTGGGAATGATGCTGGTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGCGGTGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGA

mRNA sequence

ATGCATCGCGAGGGAGGTGAAGAAGAACAAGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCAGCCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGAATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGATCTCGTGGTTTCGGTGGCGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCGAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGGTGGTGGCTTTGGTGGGAATGATGCTGGTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGCGGTGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGA

Coding sequence (CDS)

ATGCATCGCGAGGGAGGTGAAGAAGAACAAGGCTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTGAGGCAGGGTGCAAATAAGAGGATTGGATTAGATTTGCAGCCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTATCGGAGGAATTTCATACAGCACTGATGATCAAAGTCTCAGGGAAGCCTTTTCTAAATATGGGGAAGTAATCGAAGCTAGGGTCATTGTAGACCGCGAAACTGGAAGATCCAGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGACCTTCATGATCTCGTGGTTTCGGTGGCGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGGGGGCGGTGGTTATGGTGGCGGGGGCTATGGTGGTGGGGGCGGTGGTTATGGTGGCGGCGGGGCTGGAGGTTATGGTGGCGGCGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGTGGATATGGTTCCGGAGGCAACTATTCGAGCAGTTTTGGCGGTGGTAGCCAAGGAAATTATAGTAACGATTTTGCCAGTGCCAACCGTGGAAGTGTTGCAGGTGGTGGTGGCTTTGGTGGGAATGATGCTGGTGGCTACAACGCTGCTAGCAATTTTGCTACTGGAAACACATATGACAGTGGAACTAATGCTGGTTTTGGTAACGTCAGTGGCGGCGGTGGCGACTATTTTGCCAACAGTGGGTCCGATGCAAGCTCTGGGTTTGGAGGATACACTGGCGGGGAACAATTTGGCAGCAACGAAACAAACACCATGGATGCATCTGGAGATCAAGGCCAGGAGGAGCCACTGGAAGGAAATGATAGGGACGAAGACGACGCAGATGACTTTGCTAAAAGAGCCTGA

Protein sequence

MHREGGEEEQGCFKMAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAVVMVAGAMVVGGGGYGGGGYGGGGGGYGGGGAGGYGGGGSGGGYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEPLEGNDRDEDDADDFAKRA

Homology

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BLAST of Clc06G16780 vs. NCBI nr
Match: XP_038878732.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 372.9 bits (956), Expect = 2.8e-99
Identity = 254/330 (76.97%), Postives = 263/330 (79.70%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFL K GNILRQGANKRIGLDLQ S LSICQAVRWMSSMQSSKLF+GGISY+TDDQSLR
Sbjct: 1   MAFLGKFGNILRQGANKRIGLDLQASSLSICQAVRWMSSMQSSKLFVGGISYNTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSV---- 134
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVT+TSSEEASSAIQALDGQDLH   V V    
Sbjct: 61  EAFAKYGEVLEARIIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 ------AGAVVMVAGAMVVGGGGYGGGGYG------------GGGGGYGGGGAGGYGGGG 194
                  G      G+   GGGGYGGGGYG            GGGGGY GGGAGGYGGGG
Sbjct: 121 DRTRGFGGGGGYGGGSYGGGGGGYGGGGYGGGGGDGYGGGGYGGGGGYSGGGAGGYGGGG 180

Query: 195 SGGGYGDGSG-----GYGSGGNYSSSFGGGSQGNYSNDFASANRGSV-AGGGGFGGNDAG 254
           SGGGYGDGSG     GY SGGNYS     GS GNYSND AS N GSV  GGGGFGGNDA 
Sbjct: 181 SGGGYGDGSGGYSGTGYSSGGNYSR----GSGGNYSNDNASDNLGSVGTGGGGFGGNDA- 240

Query: 255 GYNAASNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNT 314
           GYNAASNFA+GNT+DSGTNAGFGNVSGGG DYFANSG DASSG GGYTGGEQFGS ETNT
Sbjct: 241 GYNAASNFASGNTHDSGTNAGFGNVSGGGSDYFANSGFDASSGVGGYTGGEQFGS-ETNT 300

Query: 315 MDASGDQGQEEPLEGNDRDEDDADDFAKRA 317
           MDASGDQG  E LEGNDRDEDD DDFAKRA
Sbjct: 301 MDASGDQGLGEQLEGNDRDEDDTDDFAKRA 324

[Close]

BLAST of Clc06G16780 vs. NCBI nr
Match: KAG6589603.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 346.7 bits (888), Expect = 2.2e-91
Identity = 246/337 (73.00%), Postives = 259/337 (76.85%), Query Frame = 0


Query: 1   MHREGGEEEQGCFKMAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLF 60
           MHR   EEEQGCFKMAFLSKVGNILRQGANKR GL+LQ   LSI QAVRWMSSMQSSK+F
Sbjct: 1   MHRNEREEEQGCFKMAFLSKVGNILRQGANKRTGLNLQAPSLSIFQAVRWMSSMQSSKVF 60

Query: 61  IGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDG 120
           IGGISYSTDDQSLREAF+KYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDG
Sbjct: 61  IGGISYSTDDQSLREAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDG 120

Query: 121 QDLHDLVVSVAGA----VVMVAGAMVVGGGGYGGGGYGGGGGGYGGGGAGGYGGGGSGGG 180
           QDLH   V V  A      M  G    GGGGYGGGGYGGGGGGYGGGG GG GG G GG 
Sbjct: 121 QDLHGRRVRVNYANDRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGGYGGGGGYGGGGS 180

Query: 181 YGDGSGGYG---------SGGNYSSSFGGG------SQGNYSNDFASANRGSVAGGGGFG 240
           YG G G YG          GG Y    GGG      +  NYS+ F S ++GS  G  G G
Sbjct: 181 YGGGGGSYGGGAYGGGVSGGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGS-GGNYGTG 240

Query: 241 GNDAGGYNAASNFATGNTYDSGTNAGFG-NVSGGGGDYFANSGSDASSGFGGYTGGEQFG 300
           GNDAG  NAASNFA+GNT+ SGT+A F  NVS GGGDYFANSGSDASSGFGGYTGG+Q G
Sbjct: 241 GNDAGS-NAASNFASGNTFGSGTSADFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQLG 300

Query: 301 SNETNTMDASGDQGQEEPLEGNDRDEDD-ADDFAKRA 317
           SNE NT++ASGDQG  E LEGNDRDEDD ADDFAKRA
Sbjct: 301 SNEANTLNASGDQGLGEQLEGNDRDEDDNADDFAKRA 335

[Close]

BLAST of Clc06G16780 vs. NCBI nr
Match: XP_022933621.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata] >XP_022933622.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 334.0 bits (855), Expect = 1.4e-87
Identity = 239/319 (74.92%), Postives = 256/319 (80.25%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQGANKRIG DLQ   LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V  A 
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 VM---VAGAMVVGGGGYGGGGYG-----GGGGGYGGGGAGGYGGGGSGGGYGDGSG---- 194
                V G    GGGGYGGGGYG     GGGGGYG GGAGGYGGGGS GGYGDGSG    
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGYGGGGGYGGGGGYGDGGAGGYGGGGS-GGYGDGSGGFST 180

Query: 195 -GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATGN 254
            GY SGGNYS++FGGGSQ   GNY N+FAS +RGSV+ GGGFGGNDA GYN ASNF    
Sbjct: 181 TGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-ASNF---- 240

Query: 255 TYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEP 314
              SG ++G  NVSGGGGDYF+N GS+ SSGFGGYTGG+QF S ET+TM+A G  G  E 
Sbjct: 241 ---SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNAPG-SGLGEQ 300

Query: 315 LEGNDRDE-DDADDFAKRA 317
           LEGNDRDE DDADDFAKRA
Sbjct: 301 LEGNDRDEDDDADDFAKRA 308

[Close]

BLAST of Clc06G16780 vs. NCBI nr
Match: XP_023530847.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530848.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530849.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 331.6 bits (849), Expect = 7.2e-87
Identity = 238/323 (73.68%), Postives = 258/323 (79.88%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQGANKRIG DLQ S LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V  A 
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 VM---VAGAMVVGGGGYGGGGYGGGG-GGYGGGGAGGYGGGGSG-------GGYGDGSG- 194
                V G    GGGGYGGGGYGGGG GGYGGGGAGGYGGGG+G       GGYGDGSG 
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGYGGGGAGGYGGGGAGGYGGGGAGGYGGGGSGGYGDGSGG 180

Query: 195 ----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFA 254
               GY SGGNY+++FGGGSQ   GNY N+FAS +RGSV  GGGFGGNDA GYN ASNF 
Sbjct: 181 FSTTGYSSGGNYTNNFGGGSQGSGGNYGNEFASDSRGSVGTGGGFGGNDA-GYN-ASNF- 240

Query: 255 TGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQ 314
                 SG ++G  NVSGGGGDYF+N GS+ SSGFGG+TGG+QF S ET+TM+A G  G 
Sbjct: 241 ------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGFTGGDQFSSKETDTMNAPG-SGL 300

Query: 315 EEPLEGNDRDE--DDADDFAKRA 317
            E LEGNDRDE  DDA+DFAKRA
Sbjct: 301 GEQLEGNDRDEDDDDANDFAKRA 313

[Close]

BLAST of Clc06G16780 vs. NCBI nr
Match: KAG6587583.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 329.3 bits (843), Expect = 3.6e-86
Identity = 238/326 (73.01%), Postives = 256/326 (78.53%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQGANKRIG DLQ   LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V  A 
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 VMVAGAMVVGGGGYGGGGYG---------GGGGGYGGGGAGGYG------GGGSGGGYGD 194
               G   VGGGGYGGGGYG         GGGGGYGGGGAGGYG      GGG  GGYGD
Sbjct: 121 DRSRG---VGGGGYGGGGYGGGGYGGGGYGGGGGYGGGGAGGYGGGAGGYGGGGSGGYGD 180

Query: 195 GSG-----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGGGGFGGNDAGGYNAA 254
           GSG     GY SGGNYS++FGGGSQ   GNY N+FAS +RGSV+ GGGFGGNDA GYN A
Sbjct: 181 GSGGFSTTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-A 240

Query: 255 SNFATGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASG 314
           SNF       SG ++G  NVSGGGGDYF+N GS+ SSGFGGYTGG+QF S ET+TM+A G
Sbjct: 241 SNF-------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNAPG 300

Query: 315 DQGQEEPLEGNDRDE-DDADDFAKRA 317
             G  E LEGNDRDE DDA+DFAKRA
Sbjct: 301 -SGLGEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of Clc06G16780 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.6e-41
Identity = 149/285 (52.28%), Postives = 179/285 (62.81%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSK GNIL+Q  NK++   +  S  S+ QA+R MS   SSKLFIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAF+KYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLH  VV V  A 
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 135 VMVAGAMVVGGGGYGGGGYGGGGGGYGGGG--AGGYGGGGSGGGYGDGSGGYGSGGNYSS 194
              +      GGG+GGGGYGGGGGGYGG G   GG GG G  GGYG G+GGY  GGN   
Sbjct: 121 DRTS------GGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGY--GGNSGG 180

Query: 195 SFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNF-ATGNTYDSGTNAGFGNV 254
            +GG + G Y    A    G   G GG G    GGY ++  F ++GNTY  G++A  G V
Sbjct: 181 GYGGNAAGGYGGSGAGGYGGDATGHGGAG----GGYGSSGGFGSSGNTYGEGSSASAGAV 240

Query: 255 SGGGGDYFANSGSDASSGFGGYTGGEQFGSNET-NTMDASGDQGQ 296
               G     S +   S  GG+ G  QFG +   N+    GD  Q
Sbjct: 241 GDYNGSSGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQ 270

[Close]

BLAST of Clc06G16780 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-26
Identity = 146/318 (45.91%), Postives = 181/318 (56.92%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVG +  Q ++         +  S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSH------VTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAFSKYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLH   + V  A 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 135 VMVAGAMVVGGGGYG--GGGYGGGGGGYG------GGGAGGYGGGGSGGGYGDGSGGYGS 194
              +G    GG G+G  GGGYG   GGYG      GGGAGGYGG  S  G   G GGYG 
Sbjct: 121 ERGSG---FGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGG 180

Query: 195 GGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGN--------DAGGYNAASNFATGN 254
               +SS+GG + G   N   S N  +V GGGG+G N         AGG   + NFA G 
Sbjct: 181 ----NSSYGGNAGGYGGNPPYSGN--AVGGGGGYGSNFGGGGGYGVAGGVGGSENFAQG- 240

Query: 255 TYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEP 314
              S TNAGF +          ++     SG G   G EQFG ++    DA     +  P
Sbjct: 241 ---SSTNAGFDDKFESNQPLGNDTDHQTESGLG---GDEQFGGSDNQFGDAENGNTENGP 289

Query: 315 LEGNDRDEDDADDFAKRA 317
           +     D+ D  D AKRA
Sbjct: 301 V---GFDQTDDGDVAKRA 289

[Close]

BLAST of Clc06G16780 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-21
Identity = 84/165 (50.91%), Postives = 112/165 (67.88%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAF +K+G +LRQ  +    + +     S+  ++R M    S+KLFIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPV----TSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           +AF+ +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+   + V  A 
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 135 VMVAGAMVVGGGG---YGGGGYGGGGGGYGGGGAGGYGGGGSGGG 177
              +     GGGG    GGGGYGGGGGGYGGGG GGYGGGG GGG
Sbjct: 121 DRPSAPRAYGGGGGYSGGGGGYGGGGGGYGGGG-GGYGGGGDGGG 156

[Close]

BLAST of Clc06G16780 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.6e-18
Identity = 86/154 (55.84%), Postives = 105/154 (68.18%), Query Frame = 0


Query: 58  KLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 117
           + F+GG+ ++TDDQSL+ AFSKYG+VI++++I DRETGRSRGFGFVT+ S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 118 LDGQDLHDLVVSVAGAVVMVA---GAMVVGGGGYGGGGYGGGGGGYGGGGAGGYGGG--G 177
           ++GQDL    ++V  A    +   G    GGGGYGG    GGGGGYGGGG GGYGGG  G
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGG-GGYGGGRSG 126

Query: 178 SGGGYGD---GSGGY-GSGGNYSSSFGGGSQGNY 203
            GGGYG    G GGY G GG Y  S GG   GN+
Sbjct: 127 GGGGYGSRDGGGGGYGGGGGGYGGSRGGSGGGNW 159

[Close]

BLAST of Clc06G16780 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.0e-15
Identity = 83/172 (48.26%), Postives = 108/172 (62.79%), Query Frame = 0


Query: 58  KLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 117
           + F+GG++++TDD++L  AFS+YGEV+++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 118 LDGQDLHDLVVSVAGAVVMVAGAMVVGGGGYGGGG--YGGGGGGYGGGGAGGYGGGGSGG 177
           ++GQDL    ++V  A    +G    GGGG GGGG    GGGGGYGGGG GGYGGGG  G
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGG---GGGGRGGGGGYRSGGGGGYGGGG-GGYGGGGREG 128

Query: 178 GYGDGSGGYGSGGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGG 228
           GY  G GGY S G     +GGG             R     GGG+GG+  GG
Sbjct: 129 GYSGGGGGYSSRGGGGGGYGGG------------GRRDGGEGGGYGGSGGGG 164

[Close]

BLAST of Clc06G16780 vs. ExPASy TrEMBL
Match: A0A6J1EZK6 (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440991 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 7.0e-88
Identity = 239/319 (74.92%), Postives = 256/319 (80.25%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQGANKRIG DLQ   LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V  A 
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 VM---VAGAMVVGGGGYGGGGYG-----GGGGGYGGGGAGGYGGGGSGGGYGDGSG---- 194
                V G    GGGGYGGGGYG     GGGGGYG GGAGGYGGGGS GGYGDGSG    
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGYGGGGGYGGGGGYGDGGAGGYGGGGS-GGYGDGSGGFST 180

Query: 195 -GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATGN 254
            GY SGGNYS++FGGGSQ   GNY N+FAS +RGSV+ GGGFGGNDA GYN ASNF    
Sbjct: 181 TGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-ASNF---- 240

Query: 255 TYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEP 314
              SG ++G  NVSGGGGDYF+N GS+ SSGFGGYTGG+QF S ET+TM+A G  G  E 
Sbjct: 241 ---SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNAPG-SGLGEQ 300

Query: 315 LEGNDRDE-DDADDFAKRA 317
           LEGNDRDE DDADDFAKRA
Sbjct: 301 LEGNDRDEDDDADDFAKRA 308

[Close]

BLAST of Clc06G16780 vs. ExPASy TrEMBL
Match: A0A6J1I6P9 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 6.6e-86
Identity = 234/311 (75.24%), Postives = 255/311 (81.99%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQGANK+IG DLQ S LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V  A 
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 VMVAGAMVVGGGGYGGGGYGGGGGGYGGGGAGGYGGGGSGGGYGDGSG-----GYGSGGN 194
               G   VGGGGYGGGG G GGGGYGGGG GGYGGGGS GGYGDGSG     GY SGGN
Sbjct: 121 DRSRG---VGGGGYGGGG-GYGGGGYGGGGPGGYGGGGS-GGYGDGSGGFSTTGYSSGGN 180

Query: 195 YSSSFGGGSQ---GNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATGNTYDSGTNA 254
           Y+++FGGGSQ   GNY N+FAS +RGSV+ GGGFGGNDA GYN ASNF       SG ++
Sbjct: 181 YTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-ASNF-------SGGDS 240

Query: 255 GFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEPLEGNDRDE 314
           G  NVSGGGGDYF+N GS+ SSGFGGYTGG+QF S ET++M+A G  G  E LEGNDRDE
Sbjct: 241 GNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAPG-SGLGEQLEGNDRDE 296

Query: 315 -DDADDFAKRA 317
            DDA+DFAKRA
Sbjct: 301 DDDANDFAKRA 296

[Close]

BLAST of Clc06G16780 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 8.6e-86
Identity = 237/319 (74.29%), Postives = 251/319 (78.68%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQGANKR GL+ Q   LSI QAVRWMSSMQSSK+FIGGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGA- 134
           EAF+KYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V  A 
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 ---VVMVAGAMVVGGGGYGGGGYGGGGGGYGGGGAGGYGGGGSGGGYGD-GSGGYGSGGN 194
                M  G    GGGGYGGGGYGGGGGGYGGGG GGYGGG  GGG G  G G YG GG+
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGG-GGYGGGSYGGGGGSYGGGSYGGGGS 180

Query: 195 YSSSFGGGSQG----------NYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATGNT 254
               +GG S G          NYS+ F S ++GS  G  G GGNDAG  NAASNFA+GNT
Sbjct: 181 GGGGYGGESGGGFGSGFSAGDNYSSSFGSGSQGS-GGNYGTGGNDAGS-NAASNFASGNT 240

Query: 255 YDSGTNAGFG-NVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEP 314
           + SGT+AGF  NVS GGGDYFANSGSDASSGFGGYTGG+QFGSNE NT++ASGDQG  E 
Sbjct: 241 FGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGLGEQ 300

Query: 315 LEGNDRDEDD-ADDFAKRA 317
           LEGNDRDEDD ADDFAKRA
Sbjct: 301 LEGNDRDEDDNADDFAKRA 316

[Close]

BLAST of Clc06G16780 vs. ExPASy TrEMBL
Match: A0A6J1I7Z2 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 4.3e-85
Identity = 235/324 (72.53%), Postives = 256/324 (79.01%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQGANK+IG DLQ S LSICQAVRWMSSMQSSKLF+GGIS+STDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSV---- 134
           EAF+KYGEV+EAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V    
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 -----AGAVVMVAGAMVVGGGGY-GGGGYGG---GGGGYGGGGAGGYGGGGSGGGYGDGS 194
                 G      G    GGGGY GGGGYGG   GGGGYGGGG GGYGGGGS GGYGDGS
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGGGGYGGGGYGGGGYGGGGPGGYGGGGS-GGYGDGS 180

Query: 195 G-----GYGSGGNYSSSFGGGSQ---GNYSNDFASANRGSVAGGGGFGGNDAGGYNAASN 254
           G     GY SGGNY+++FGGGSQ   GNY N+FAS +RGSV+ GGGFGGNDA GYN ASN
Sbjct: 181 GGFSTTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFGGNDA-GYN-ASN 240

Query: 255 FATGNTYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQ 314
           F       SG ++G  NVSGGGGDYF+N GS+ SSGFGGYTGG+QF S ET++M+A G  
Sbjct: 241 F-------SGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAPG-S 300

Query: 315 GQEEPLEGNDRDE-DDADDFAKRA 317
           G  E LEGNDRDE DDA+DFAKRA
Sbjct: 301 GLGEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of Clc06G16780 vs. ExPASy TrEMBL
Match: A0A6J1JKW7 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485357 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 4.1e-80
Identity = 234/322 (72.67%), Postives = 249/322 (77.33%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVGNILRQ ANKR GL+LQ   LSICQAVRWMSSMQSSK+F+GGISYSTDDQSLR
Sbjct: 1   MAFLSKVGNILRQSANKRTGLNLQAPSLSICQAVRWMSSMQSSKVFVGGISYSTDDQSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSV---- 134
           EAF+KYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLH   V V    
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 135 ---AGAVVMVAGAMVVGGGGYGGGGYGGG--GGGYGGGGAGGYGGGG---SGGGY---GD 194
               G      G    GGGGYGGGGYGGG  GGG  GGG+GGYGGGG   SGG Y   G 
Sbjct: 121 DRSRGMGGGYGGGYGGGGGGYGGGGYGGGGYGGGGYGGGSGGYGGGGGSYSGGAYGGGGS 180

Query: 195 GSGGYG--SGGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNFATG 254
           G GGYG  SGG + S F  G   NYS+ F   ++GS  G  G GGNDAG  N+ASNFA+G
Sbjct: 181 GGGGYGGESGGGFGSGFSTGD--NYSSSFGGGSQGS-GGNYGTGGNDAGS-NSASNFASG 240

Query: 255 NTYDSGTNAGFG-NVSGGGGDYFANSGSDASSGFGGYTGGEQFGSN-ETNTMDASGDQGQ 314
           N   SGT+AGF  NVS GGGDYFANSGSDASSGFGGYTGG+QFGSN E NT++ASGDQG 
Sbjct: 241 N---SGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNDEANTLNASGDQGL 300

Query: 315 EEPLEGNDRDEDD-ADDFAKRA 317
            E LEGNDRDEDD ADDFAKRA
Sbjct: 301 GEQLEGNDRDEDDNADDFAKRA 315

[Close]

BLAST of Clc06G16780 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-42
Identity = 149/285 (52.28%), Postives = 179/285 (62.81%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSK GNIL+Q  NK++   +  S  S+ QA+R MS   SSKLFIGG++YS D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAF+KYGEV++ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLH  VV V  A 
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 135 VMVAGAMVVGGGGYGGGGYGGGGGGYGGGG--AGGYGGGGSGGGYGDGSGGYGSGGNYSS 194
              +      GGG+GGGGYGGGGGGYGG G   GG GG G  GGYG G+GGY  GGN   
Sbjct: 121 DRTS------GGGFGGGGYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGY--GGNSGG 180

Query: 195 SFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGGYNAASNF-ATGNTYDSGTNAGFGNV 254
            +GG + G Y    A    G   G GG G    GGY ++  F ++GNTY  G++A  G V
Sbjct: 181 GYGGNAAGGYGGSGAGGYGGDATGHGGAG----GGYGSSGGFGSSGNTYGEGSSASAGAV 240

Query: 255 SGGGGDYFANSGSDASSGFGGYTGGEQFGSNET-NTMDASGDQGQ 296
               G     S +   S  GG+ G  QFG +   N+    GD  Q
Sbjct: 241 GDYNGSSGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQ 270

[Close]

BLAST of Clc06G16780 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 146/318 (45.91%), Postives = 181/318 (56.92%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAFLSKVG +  Q ++         +  S+ Q++R MS   SSK+F+GGISYSTD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSH------VTASSSMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           EAFSKYGEV++A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLH   + V  A 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 135 VMVAGAMVVGGGGYG--GGGYGGGGGGYG------GGGAGGYGGGGSGGGYGDGSGGYGS 194
              +G    GG G+G  GGGYG   GGYG      GGGAGGYGG  S  G   G GGYG 
Sbjct: 121 ERGSG---FGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNSSYSGNAGGGGGYGG 180

Query: 195 GGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGN--------DAGGYNAASNFATGN 254
               +SS+GG + G   N   S N  +V GGGG+G N         AGG   + NFA G 
Sbjct: 181 ----NSSYGGNAGGYGGNPPYSGN--AVGGGGGYGSNFGGGGGYGVAGGVGGSENFAQG- 240

Query: 255 TYDSGTNAGFGNVSGGGGDYFANSGSDASSGFGGYTGGEQFGSNETNTMDASGDQGQEEP 314
              S TNAGF +          ++     SG G   G EQFG ++    DA     +  P
Sbjct: 241 ---SSTNAGFDDKFESNQPLGNDTDHQTESGLG---GDEQFGGSDNQFGDAENGNTENGP 289

Query: 315 LEGNDRDEDDADDFAKRA 317
           +     D+ D  D AKRA
Sbjct: 301 V---GFDQTDDGDVAKRA 289

[Close]

BLAST of Clc06G16780 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-22
Identity = 84/165 (50.91%), Postives = 112/165 (67.88%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAF +K+G +LRQ  +    + +     S+  ++R M    S+KLFIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPV----TSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           +AF+ +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+   + V  A 
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 135 VMVAGAMVVGGGG---YGGGGYGGGGGGYGGGGAGGYGGGGSGGG 177
              +     GGGG    GGGGYGGGGGGYGGGG GGYGGGG GGG
Sbjct: 121 DRPSAPRAYGGGGGYSGGGGGYGGGGGGYGGGG-GGYGGGGDGGG 156

[Close]

BLAST of Clc06G16780 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-21
Identity = 81/162 (50.00%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 15  MAFLSKVGNILRQGANKRIGLDLQPSGLSICQAVRWMSSMQSSKLFIGGISYSTDDQSLR 74
           MAF +K+G +LRQ  +    + +     S+  ++R M    S+KLFIGG+S+ TDD SLR
Sbjct: 1   MAFCNKLGGLLRQNISSNGNVPV----TSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 75  EAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHDLVVSVAGAV 134
           +AF+ +G+V++A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+   + V  A 
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 135 VMVAGAMVVGGGGYGGGGYGGGGGGYGGGGAGGYGGGGSGGG 177
              +     GGG  GG  YGGGGGGYGGGG GGYGGGG GGG
Sbjct: 121 DRPSAPRAYGGG--GGYSYGGGGGGYGGGG-GGYGGGGDGGG 151

[Close]

BLAST of Clc06G16780 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 83.2 bits (204), Expect = 4.2e-16
Identity = 86/179 (48.04%), Postives = 112/179 (62.57%), Query Frame = 0


Query: 58  KLFIGGISYSTDDQSLREAFSKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 117
           + F+GG++++TDD++L  AF++YG+VI++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 118 LDGQDLHDLVVSVAGAVVMVAGAMVVGGGGYGGGGYGGGGGGYGGGGAGGYGGG----GS 177
           ++GQDL        G  + V  A   G GG GGG  GGGGGGY  GG GGY GG    G 
Sbjct: 69  MNGQDLD-------GRSITVNEAQSRGSGG-GGGHRGGGGGGYRSGGGGGYSGGGGSYGG 128

Query: 178 GGGYGDGSGGY-GSGGNYSSSFGGGSQGNYSNDFASANRGSVAGGGGFGGNDAGGYNAA 232
           GGG  +G GGY G GG YSS  GGG  G+Y         G   GGGG+GG + GGY  +
Sbjct: 129 GGGRREGGGGYSGGGGGYSSRGGGG--GSYGG-------GRREGGGGYGGGEGGGYGGS 170

The following BLAST results are available for this feature:

BLAST of Clc06G16780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878732.1	2.8e-99	76.97	glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida]	[more]
KAG6589603.1	2.2e-91	73.00	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_022933621.1	1.4e-87	74.92	glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita moschata] >XP_...	[more]
XP_023530847.1	7.2e-87	73.68	glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
KAG6587583.1	3.6e-86	73.01	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]

BLAST of Clc06G16780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	3.6e-41	52.28	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	1.5e-26	45.91	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	1.4e-21	50.91	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	5.6e-18	55.84	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
P49310	2.0e-15	48.26	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Clc06G16780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZK6	7.0e-88	74.92	glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1I6P9	6.6e-86	75.24	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1E1P2	8.6e-86	74.29	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1I7Z2	4.3e-85	72.53	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1JKW7	4.1e-80	72.67	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]

BLAST of Clc06G16780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	2.6e-42	52.28	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	1.1e-27	45.91	glycine-rich RNA-binding protein 5	[more]
AT4G13850.1	1.0e-22	50.91	glycine-rich RNA-binding protein 2	[more]
AT4G13850.2	4.3e-21	50.00	glycine-rich RNA-binding protein 2	[more]
AT2G21660.1	4.2e-16	48.04	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 53..69 score: 23.53 coord: 143..158 score: 53.91 coord: 216..234 score: 36.18 coord: 168..178 score: 53.41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..316
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 15..315
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 15..315
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 58..131 e-value: 3.7E-27 score: 106.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 59..126 e-value: 5.7E-22 score: 77.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 57..133 score: 19.604216
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 38..135 e-value: 4.2E-26 score: 93.8
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G16780.1	Clc06G16780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding