Clc06G16160 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G16160
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transcription initiation factor IIE subunit alpha
Location	ClcChr06: 27008620 .. 27014959 (+)
RNA-Seq Expression	Clc06G16160
Synteny	Clc06G16160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTTTATTCATTTCCTCTCACGATTTTCAGATCTCTCTCCTCTGCAAAGTCTTGGTTGAATCGAATACCGAAAAAAATTCAGCTCACATGTATTAGCAAAGACCAGTTCTAAGAATTTGATTGAGGAATTGAACCCCAAGTTAATTCATCACCACCATGAGTATCGAACCCTTTAACAGGTACTTTCCTTTATTAACTTGTGAGCTCTCTCAAATGATAAAATGGCAATTTGAATACCTTCTCTAGCTGGGAACAATGGGACTGTTTTCTATTTTCATTTTCCTTCTTGGGTTTTGTTTAATTTGGTGGGTTGATTGATCTTGATCAATTGGGCAGGTTGGTGAAGCTAGCTGCGAGAGCTTTCTACGATGACATTACGACTAAAGGGGATAATCAACCTAAGACCGGTAGGAGTGATAATAGGGGAATCGCGGTTGTTGTCCTTGATGCTCTTACGAGGTATTGCTCTTTGGGTTTTAATCTACTTGGAAATCTTTAGCCTTATATACAAGGCAGAAGCAGAATACCGTTGCTCAATTTGTTGTTACTAAGCAACTGAAAGGAGGGGGAGCGGGAGCTACATTAGTGGAACGCATTTTACATAGGAACTGTGCTTGAATATAATTGGATTAGTGGGAATTCGAATGGCACGCTCTTTCTTGATTTTGAACGTATTGCAGTTTTAAGTGGATTCTTGGTAGTTATATTTCCAGACTAGCTGGGCACTTTATACATTTTATTGTACTTTTTAAATATCCATGAGCGTCCAAGCTACCTTATGTACAACTCAAGCAATCTCATGGGAGAACCCGCTTGACTTTATAACATTTGTATATTAAAGAAACTCATAGGATATTAAATCATGGATACCATGGACTGAACCATTCCCTCCAAGTTCTTTATTAAATTCATGATTCTTTTTTACTACTAGGCCAACCCATGGTGATTCTGAACATTGTATGTATTGTACACCCAATTCTGCTAGTGCTGGGTTGGAACAACTAAATTGATCAACATCATGGTTGTTTATATATGTTTCTTGAAACTTATCTTGTATACGTTCTTTCTCTAGTCAAGCTAAGTTGAAGGATGGCATGGAGCATTGATGCAGCTTACTCAATAGCTTAGTTTGTACTTCTGTTTCTTTTAAACTTGGAGGTTATCATTTCATTTTTGCTTATTATTGGTTCATCTATTATTTTTTTTTAAAGTTAGATTTTTTTGGACGGTCTGAGCAAATGGGTAATTGAAAAATGTCATTTTAAAGTTTCAAATTTCTTAATTTATTATCATAAAGGACTTGCTCGTCTGTTCTTGAATTTGTTGTGATGACAGATCCTCGCATGCATGTTTCTTCTTCTGTGAGTCTGATGAGCTGTTTTACTGCCACATTTTTCCTTTGCTTATCATATTTATTGTTGTATCCTTTCCTAGACGACAATGGGTTCGGGAAGAAGATTTGGCAAAGAACTTAAAACTACATTCAAAGCAATTGCGTCGAACCCTAAGGTTTTTAGAGGAGGAAAAACTGATTACCCGAGATCATAGAAGGGAGGTCAGTGCTGACTCTATCAATGCATCTTGTTCTTGTGCCTATTAGGTTAGTAGTCTTGAAATTTCTTGGTATGTTGTTTTTTTTTTTTTTTTGGATATCTATGAGTATCTGGGGCGCTTACCTGCACCTCAACTAATCTCACGGGACAACCCACTTGACTCTACAACATTTTGGTGTCAAGGAAACTCGTAGGAAATTAATTCTTAGGTAGGCAGCTACCATGGATTGAACTCTTGCCTTCTTAGTCATTTATTGAGACTGTGTCTCCTTTTTACCACTAGGCCAACCCATGATGGTTGAAATTTCTTAGTATGTAGTTTTGAGCATCTTAACTTGATTATCTAAACCATCATGGGCTGGCCTAGTGGTAAAAAAGGAGACATACTCTCAATAAATGGCTAAAAGGTCATGGGTTCAATCTATGGTGACTACCTACCTAGGATTTAATATCCTAAGAGTTCCCCTGACATCCAAATGTTGTAGGGTCAGGCAGGTTGTCCTCCCCAAAAAAAACTTGATTGTCTATAGCATCTAAGGTGCTTATGTTGAATGGAGTTGGAGACGCTTGGGACGTTACTATTTTTGTTGCCTTTTCGTGTATTTAGTTTAAATTTGAGCCGAATAATAAGTTTAGTATTTAACTTTCAAGTTTATGTCTATTTGGTTCTTGGACTTTGAAATATATCTAATAGATCTTTTAACTTCTAATATGTCTAATAGATCTTTGAACTTTAAATTTTATGTCATTGACATATTCAAAGTTCTTAGAAATAAATTGATCTATTAAAAAAAAAAAAAAAAAGAGTTTTATGTCAAATGCAATTCTAAACTTTCAATTTCATGTCTAGTAGATTCGTGGTTTTTCAGAAGTCAAGAACTCATTAGACATGAAGTTTGAAATCTAGAGACTGATTGGACACGAAACTAAAAGTTTAGGCACCAAATAGACACAAACTTGAAAGTTATTGGGACTAAACTTGTAATTTAATAGACCTATCAGACACAAACTTGAAAGTTATCAGGACCAAATAGACCTATCTGACACAAAATTGAAAGTTCAAAGACCAATTTAGATATGAGATTGCATAAATGCCACTAACACTTTGGAGTATATACTAATAAATATAGTTCGCGTTGAATCCATTGATAGATGGCTCTACCGCAATTATTACATCACTTTACCTTCTTTCATGGACTAGATATATGGACAATCCACCTTTCTCTCTTGTATGTGTCACACCATTTTAGATCTTCACTAGAGGAGAGATTGGAAAATAAGAATTAGAACTAAGTTGAATGAAGTTCACTCTCATCAACTCTGCACTTTTAACTCTCTCATTTTACATTTTATCTTCTTGTATTTCTTCATCCAAGGCTGATTTGGTGTGTAAATTTGTCTGGTATTTTTCATAGAGTAAAATGTATATGAATTCTGTTAAACATATTGCTTAATATACTCTTTAATGTGGAGGAGCGTATCAACTAGTTATCATTATTTCATTATTTATAGGCATGCTCTTCATCTTTTTGCTCTTTGCTTTTTCAGACAGCTAAGGGAGCAAAGATATTTAGTGCTGCGGTTGCTGCCACAGCCGATGGTCAACACCCAGCGAAGGACGGGGATGAAAAGATTAAGATGCACACACACTCTTATTGTTCGCTAGACTATGCACAGGTTTCTTTTCTACATGTAACTTTTGTGGTTGCTTCATCATTAAATAATAAGTGTATCTAAACCAAATGAAAACAGACTTAATTCTGATCAGTTACCATATTAAAGCTAAACCTGGTTTCAGATCTATGATGTGGTTAGATACAGAATGCACCGCATGAAGAAGAAACTGAAAGATGAACTGGAGGACAAGAACACAGTTCAGGAGTATATATGCCCTAACTGTTCAAGAAGGTTTGGATGATGCGTTCTTTTTCTCTTAAGAAATGTTCTTCCTGATATTTTGTACTTTTGACCGGATAAAATCACAGCACTGCACAATTGTTACTGACTTTATCCGGAAGCAAGCTTGAAAATTTGATGATATTGATCAGGTACACTGCTTTGGATGCTCTCCGATTAATCTCTTTTGAGGATGAATACTTCCATTGTGAAAATTGCAATGGAGAGCTGGTTGCAGAGAGTGACAAACTGGCTGCTGCCCAAGGAGGGGATGGAGATGATAATGCCAGGAAGCGCCGGCATGAAAAATTGAAGGACATGCTTCAAAAGATGGAGGTTTGATCTAAATAGAATTTTATTTGTCAACGTGCTGTGCATTTTACATTAATGAATTTTACAATTAGTACAATTACCCAAACGAAGTGCATTCTGAATCTTGTTCAACTTTAAATCTTCCTTCTTTCTTTCTTCTTCTTCTTCTTTTTTTTTTTAAAAAAATAATGAACACCTGTTTTGTAGAAGATTTCTGATTCTTTCCTTCTTGGCTTCTGTCTGTTTCAGAATTTATGAGGATTGTTGTTTACTTAAGTTTTTTTACATAAGTTAGTTTAATATAATACTGACCTTCAACTTGAAGCCACATTTCTGGGATTATTTATGAGGGATTTGTGTCTGTTCCCTTGAGTTTGTGTTAAAGGATTTTTCAATCACTAAATGTTGATAAATAAATCAAATAATTGCAGGTCCAGCTTAAACCTTTAATGGAACAACTCACCAGAGTCAAAGATTTGCCAGTTCCCGAATTTGGAACTCTTTTAGCATGGGAAGCTCGTGCAAGTGCAGCTGCACGGGGGGCAAATGGTGATCTCAATGGCAATGATCCCTCAAAATCATCACAAGGTTTGGGATATGGGGGAACACCTATGCCTTTTGTTGGCGAGACCAAGGTATCCCATTTTTTCACCTCATGCTTGTTTTATTGTTGGACCTTGAAAGGTACCAATCTGACGATCAATGAGTTTTCGAATGAACCCATTAGGTTGAAGTTGCCTTTTCTGGGGCTGAGGGCAAGGGAGTGGATGTTAAATCTGAATCCGAGAGCACAGGTCTGAAAGTTTTGCCTCCTTGGATGATCAAGAAAGGAATGAACCTCACAAAGGAACAACGTGGGGAGGTCAAGGACGAGTCAAAGATGGATGCTGGTTCCGCTTCTGCTCAGTTTTCTGATGATAAAAAGTCATCGACCAATGATGATGATAAAACGAATATACAGGCTCGTTGAATTAGATTGGCTCTTTTAATTTCTTATGAATTTAAGTGCTTTTTTATCCTAAAATCTAAAATTAAAAGAAATTATATGATTCATGCTGTATTGTAGGATGAGTATGTTAAAGCTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAACAGGAATTATCCAGTACAGAGGTTACTGAAAATGTGGCTAACACAAATTCTAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAATGGGAGGAGGCTCCAATAGGTGGTGAGACACGACTTTTCCTGTCCATGTTTGATTCTTTAAATTTTTATGGTGTTTATATCTGCTTATTATTCTGCCATGCTGTATAAACACTTGATAGTACGATAAATTTGTAAATGACATAAACAGCATCACATGCTTTTATCTGTTTCGAGATTCAGCATGGTTTTATATGAGAGAAAGAAAGTGATTTAGTTTGAGAAATATCTTCTTGGTAATCATCATTTTCTTTTGCGTATGAATTTATCATCCTTATGCAAGGCCAAGCTAATCTTCTTTATATAGTTCCAATTTAATTGAAAAGGAATTTTGTGAATCAATTTTATGTTTCATGTAGCTTAAATATTTTGCTTGTTATTTGTGTTTGGAGCCATATACTGACTTTCTAGTTTCAAAACATAATTGATTATTCGTATAAAAAAAGAACTTTGATCACAAATTGCAACCAAAGTTCTATTATTTTATGTGTCATACTATACTAGCTTTTGAAGTGAAAGTGGTTTCAAATTTGCATGTCAAATTCATTACTGTGTACTTGGGAGTTCTGGGAAGATATTCAGTGACGAAATGCTCTAGGTTCTAGATTATTGATTTTTCAGTCGTACATTAGATTTTACTATATTTCTTAGACTAACTGTTTAAAGATGTTGAAATTAACAGTTAAGTAGAATTTAGGAAGAACCTTACATTTCATGCCATATTTTACAGGTAATGCAAATGACAATTACAAGGTTGGTGACTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGGTTGAAGCGGCAAAGAGAATTTTATACCCCAAATCAACATGGTGATGTTACCTTTCTTTCATCTGGAAGGCCTTAATGAATTGAGGTAGAAGCTCTGCAGTTAATCTTGAGCAGCCGTGTTACTTGTTATGTTGGAGCCGATTTTAAAGATCTCTAGCCTATAATTGCTTGATTTACTGCTGACATTTCATCTTGGGGACTCCGATGAATTGAACTGTTTGGTGTGCTGGAAGAAAAGATGAAGAAATATAGATTTGTAATTGATTTCTCATTCACCAATTAAGTTGGAATAAGAGAGGAATTTCAATCCATTTGTTACCAATTACAGTGGGATAAACTCGTGTGCTAACTTACTATTGAAGCAATACGGTGTATTTTGCAATAGTTTATACTTGTTTAGCTGATATAGAAGTTTAGAAATAAACACAGCGATTGCTAAACAATTTCTACTTGCTCCCTGTAGAAACAACAGAACGTAACAATTTAAATATCTTTTTAAATATTGC

mRNA sequence

CCTTTTATTCATTTCCTCTCACGATTTTCAGATCTCTCTCCTCTGCAAAGTCTTGGTTGAATCGAATACCGAAAAAAATTCAGCTCACATGTATTAGCAAAGACCAGTTCTAAGAATTTGATTGAGGAATTGAACCCCAAGTTAATTCATCACCACCATGAGTATCGAACCCTTTAACAGGTTGGTGAAGCTAGCTGCGAGAGCTTTCTACGATGACATTACGACTAAAGGGGATAATCAACCTAAGACCGGTAGGAGTGATAATAGGGGAATCGCGGTTGTTGTCCTTGATGCTCTTACGAGATCCTCGCATGCATGTTTCTTCTTCTGTGAGTCTGATGAGCTGTTTTACTGCCACATTTTTCCTTTGCTTATCATATTTATTGTTGTATCCTTTCCTAGACGACAATGGGTTCGGGAAGAAGATTTGGCAAAGAACTTAAAACTACATTCAAAGCAATTGCGTCGAACCCTAAGGTTTTTAGAGGAGGAAAAACTGATTACCCGAGATCATAGAAGGGAGACAGCTAAGGGAGCAAAGATATTTAGTGCTGCGGTTGCTGCCACAGCCGATGGTCAACACCCAGCGAAGGACGGGGATGAAAAGATTAAGATGCACACACACTCTTATTGTTCGCTAGACTATGCACAGATCTATGATGTGGTTAGATACAGAATGCACCGCATGAAGAAGAAACTGAAAGATGAACTGGAGGACAAGAACACAGTTCAGGAGTATATATGCCCTAACTGTTCAAGAAGCACTGCACAATTGTTACTGACTTTATCCGGAAGCAAGCTTGAAAATTTGATGATATTGATCAGGTACACTGCTTTGGATGCTCTCCGATTAATCTCTTTTGAGGATGAATACTTCCATTGTGAAAATTGCAATGGAGAGCTGGTTGCAGAGAGTGACAAACTGGCTGCTGCCCAAGGAGGGGATGGAGATGATAATGCCAGGAAGCGCCGGCATGAAAAATTGAAGGACATGCTTCAAAAGATGGAGGTCCAGCTTAAACCTTTAATGGAACAACTCACCAGAGTCAAAGATTTGCCAGTTCCCGAATTTGGAACTCTTTTAGCATGGGAAGCTCGTGCAAGTGCAGCTGCACGGGGGGCAAATGGTGATCTCAATGGCAATGATCCCTCAAAATCATCACAAGGTTTGGGATATGGGGGAACACCTATGCCTTTTGTTGGCGAGACCAAGGTTGAAGTTGCCTTTTCTGGGGCTGAGGGCAAGGGAGTGGATGTTAAATCTGAATCCGAGAGCACAGGTCTGAAAGTTTTGCCTCCTTGGATGATCAAGAAAGGAATGAACCTCACAAAGGAACAACGTGGGGAGGTCAAGGACGAGTCAAAGATGGATGCTGGTTCCGCTTCTGCTCAGTTTTCTGATGATAAAAAGTCATCGACCAATGATGATGATAAAACGAATATACAGGCTCCTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAACAGGAATTATCCAGTACAGAGGTTACTGAAAATGTGGCTAACACAAATTCTAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAATGGGAGGAGGCTCCAATAGGTGGTAATGCAAATGACAATTACAAGGTTGGTGACTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGGTTGAAGCGGCAAAGAGAATTTTATACCCCAAATCAACATGGTGATGTTACCTTTCTTTCATCTGGAAGGCCTTAATGAATTGAGGTAGAAGCTCTGCAGTTAATCTTGAGCAGCCGTGTTACTTGTTATGTTGGAGCCGATTTTAAAGATCTCTAGCCTATAATTGCTTGATTTACTGCTGACATTTCATCTTGGGGACTCCGATGAATTGAACTGTTTGGTGTGCTGGAAGAAAAGATGAAGAAATATAGATTTGTAATTGATTTCTCATTCACCAATTAAGTTGGAATAAGAGAGGAATTTCAATCCATTTGTTACCAATTACAGTGGGATAAACTCGTGTGCTAACTTACTATTGAAGCAATACGGTGTATTTTGCAATAGTTTATACTTGTTTAGCTGATATAGAAGTTTAGAAATAAACACAGCGATTGCTAAACAATTTCTACTTGCTCCCTGTAGAAACAACAGAACGTAACAATTTAAATATCTTTTTAAATATTGC

Coding sequence (CDS)

ATGAGTATCGAACCCTTTAACAGGTTGGTGAAGCTAGCTGCGAGAGCTTTCTACGATGACATTACGACTAAAGGGGATAATCAACCTAAGACCGGTAGGAGTGATAATAGGGGAATCGCGGTTGTTGTCCTTGATGCTCTTACGAGATCCTCGCATGCATGTTTCTTCTTCTGTGAGTCTGATGAGCTGTTTTACTGCCACATTTTTCCTTTGCTTATCATATTTATTGTTGTATCCTTTCCTAGACGACAATGGGTTCGGGAAGAAGATTTGGCAAAGAACTTAAAACTACATTCAAAGCAATTGCGTCGAACCCTAAGGTTTTTAGAGGAGGAAAAACTGATTACCCGAGATCATAGAAGGGAGACAGCTAAGGGAGCAAAGATATTTAGTGCTGCGGTTGCTGCCACAGCCGATGGTCAACACCCAGCGAAGGACGGGGATGAAAAGATTAAGATGCACACACACTCTTATTGTTCGCTAGACTATGCACAGATCTATGATGTGGTTAGATACAGAATGCACCGCATGAAGAAGAAACTGAAAGATGAACTGGAGGACAAGAACACAGTTCAGGAGTATATATGCCCTAACTGTTCAAGAAGCACTGCACAATTGTTACTGACTTTATCCGGAAGCAAGCTTGAAAATTTGATGATATTGATCAGGTACACTGCTTTGGATGCTCTCCGATTAATCTCTTTTGAGGATGAATACTTCCATTGTGAAAATTGCAATGGAGAGCTGGTTGCAGAGAGTGACAAACTGGCTGCTGCCCAAGGAGGGGATGGAGATGATAATGCCAGGAAGCGCCGGCATGAAAAATTGAAGGACATGCTTCAAAAGATGGAGGTCCAGCTTAAACCTTTAATGGAACAACTCACCAGAGTCAAAGATTTGCCAGTTCCCGAATTTGGAACTCTTTTAGCATGGGAAGCTCGTGCAAGTGCAGCTGCACGGGGGGCAAATGGTGATCTCAATGGCAATGATCCCTCAAAATCATCACAAGGTTTGGGATATGGGGGAACACCTATGCCTTTTGTTGGCGAGACCAAGGTTGAAGTTGCCTTTTCTGGGGCTGAGGGCAAGGGAGTGGATGTTAAATCTGAATCCGAGAGCACAGGTCTGAAAGTTTTGCCTCCTTGGATGATCAAGAAAGGAATGAACCTCACAAAGGAACAACGTGGGGAGGTCAAGGACGAGTCAAAGATGGATGCTGGTTCCGCTTCTGCTCAGTTTTCTGATGATAAAAAGTCATCGACCAATGATGATGATAAAACGAATATACAGGCTCCTTATTATGCTGCTATACTGAAGAAGCAACAAGAGCTTGAAGAAGCTGCTAAGGGACAACAGGAATTATCCAGTACAGAGGTTACTGAAAATGTGGCTAACACAAATTCTAGTCGCCAGGTGGGAATGAAGGCAAAACGTGAAGAGGATGAAGATGATGATATTGAATGGGAGGAGGCTCCAATAGGTGGTAATGCAAATGACAATTACAAGGTTGGTGACTTGAATGTTGAAGCATCAGCTTCGGTAGAAGATGAAGAAGAAGATGATGTGGATTGGGAGGAAGGTTGA

Protein sequence

MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCESDELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHRRETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKKLKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYFHCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDLPVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGAEGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSSTNDDDKTNIQAPYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG

Homology

[Close]

BLAST of Clc06G16160 vs. NCBI nr
Match: XP_038880289.1 (general transcription factor IIE subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 852.0 bits (2200), Expect = 2.6e-243
Identity = 459/531 (86.44%), Postives = 466/531 (87.76%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAAVAATADGQHP K+GDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK
Sbjct: 121 RETAKGAKIFSAAVAATADGQHPVKEGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLISFEDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISFEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKS+QGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSAQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGVDVKSESE+TGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS
Sbjct: 361 EGKGVDVKSESENTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAKGQ+EL STEVTENVAN NSSRQVGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKGQEELPSTEVTENVANRNSSRQVGMKA 476

Query: 481 KREEDEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREEDE+DDIEWEEAPIGGNAN+NYKV DLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREEDEEDDIEWEEAPIGGNANENYKV-DLNVEASASVEDEEEDDVDWEEG 476

[Close]

BLAST of Clc06G16160 vs. NCBI nr
Match: XP_038880290.1 (general transcription factor IIE subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 845.1 bits (2182), Expect = 3.2e-241
Identity = 458/531 (86.25%), Postives = 465/531 (87.57%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAAVAATADGQHP K+GDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK
Sbjct: 121 RETAKGAKIFSAAVAATADGQHPVKEGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLISFEDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISFEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKS+QGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSAQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGVDVKSESE+TGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS
Sbjct: 361 EGKGVDVKSESENTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAKGQ+EL STEVTENVAN NSSRQVGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKGQEELPSTEVTENVANRNSSRQVGMKA 475

Query: 481 KREEDEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREEDE+DDIEWEEAPI GNAN+NYKV DLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREEDEEDDIEWEEAPI-GNANENYKV-DLNVEASASVEDEEEDDVDWEEG 475

[Close]

BLAST of Clc06G16160 vs. NCBI nr
Match: XP_023515738.1 (general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo] >XP_023515739.1 general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 834.7 bits (2155), Expect = 4.4e-238
Identity = 448/532 (84.21%), Postives = 463/532 (87.03%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKL+TRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLVTRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAA+AATADGQHP K+GDEKIKMHTHSYCSLDYAQ+YDVVRYR+HRMKKK
Sbjct: 121 RETAKGAKIFSAAIAATADGQHPGKEGDEKIKMHTHSYCSLDYAQVYDVVRYRLHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLIS EDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISLEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGV+VKSESE+T LKVLPPWMIK+GMNLTKEQRGEVK E+KMDAGSAS QFSDDKKSS
Sbjct: 361 EGKGVNVKSESENTTLKVLPPWMIKEGMNLTKEQRGEVKGEAKMDAGSASTQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAKGQ+ELSSTEVTEN++ TNSSRQVGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKGQKELSSTEVTENLSYTNSSRQVGMKA 478

Query: 481 KREE-DEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREE DE+DDIEWEEAPI GNAN+NYKVGDLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREEDDEEDDIEWEEAPIDGNANENYKVGDLNVEASASVEDEEEDDVDWEEG 478

[Close]

BLAST of Clc06G16160 vs. NCBI nr
Match: XP_022922068.1 (general transcription factor IIE subunit 1-like [Cucurbita moschata] >KAG6589563.1 General transcription factor IIE subunit 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023252.1 General transcription factor IIE subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 834.3 bits (2154), Expect = 5.7e-238
Identity = 448/532 (84.21%), Postives = 463/532 (87.03%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKL+TRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLVTRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAA+AATADGQHP K+GDEKIKMHTHSYCSLDYAQ+YDVVRYR+HRMKKK
Sbjct: 121 RETAKGAKIFSAAIAATADGQHPGKEGDEKIKMHTHSYCSLDYAQVYDVVRYRLHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLIS EDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISLEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGV+VKSESE+T LKVLPPWMIK+GMNLTKEQRGEVK +SKMDAGSASAQFSDDKKSS
Sbjct: 361 EGKGVNVKSESENTALKVLPPWMIKEGMNLTKEQRGEVKGDSKMDAGSASAQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAK Q+ELSSTEVTEN++ TNSSRQVGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKAQKELSSTEVTENLSYTNSSRQVGMKA 478

Query: 481 KREED-EDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREED E+DDIEWEEAPI GNAN+NYKVGDLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREEDEEEDDIEWEEAPIEGNANENYKVGDLNVEASASVEDEEEDDVDWEEG 478

[Close]

BLAST of Clc06G16160 vs. NCBI nr
Match: XP_022134956.1 (general transcription factor IIE subunit 1 [Momordica charantia])

HSP 1 Score: 831.2 bits (2146), Expect = 4.8e-237
Identity = 450/532 (84.59%), Postives = 462/532 (86.84%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAAVAATADGQ P K+GDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK
Sbjct: 121 RETAKGAKIFSAAVAATADGQQPGKEGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLIS EDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISLEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGVDVKSE+E+TGLKVLPPWMIKKGMNLTKEQRGEVK+ESKMDAGSA AQFSDDKKSS
Sbjct: 361 EGKGVDVKSETENTGLKVLPPWMIKKGMNLTKEQRGEVKEESKMDAGSA-AQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTN Q      YYAAILKKQQELEE+AK  +ELSSTEVTE+V+N NSSRQVGMKA
Sbjct: 421 ANDDDKTNFQDEYVKAYYAAILKKQQELEESAKRPEELSSTEVTESVSNANSSRQVGMKA 477

Query: 481 KRE-EDEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KRE ++EDDDIEWEEAPIGGNAN+NYKVGDLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREGDEEDDDIEWEEAPIGGNANENYKVGDLNVEASASVEDEEEDDVDWEEG 477

[Close]

BLAST of Clc06G16160 vs. ExPASy Swiss-Prot
Match: Q557M8 (General transcription factor IIE subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2e1-1 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-08
Identity = 101/449 (22.49%), Postives = 177/449 (39.42%), Query Frame = 0


Query: 86  VREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHRRETAKGAKIFSAAVAATADGQHPAK 145
           +++EDLA  L++  K +R+ L  L+ + ++     +  AKG                P +
Sbjct: 41  IKDEDLALRLRIQQKYVRKILMDLKGDSMVKSSDVKVEAKG----------------PNE 100

Query: 146 DGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKKLKDELEDKNTVQEYICPNCSRSTAQ 205
            G       TH    +DY  I D+V+Y+++  +KK++     K  VQ Y C  C +    
Sbjct: 101 RGS------THLLWYIDYKHIIDIVKYKLYMFRKKMESVKVQKIDVQTYKCQTCHKV--- 160

Query: 206 LLLTLSGSKLENLMILIRYTALDALRLISFEDEYFHCENCNGELVAESDKLAAAQGGDGD 265
                             YTALD  +L++ +     CE C+GEL  E +  +  Q     
Sbjct: 161 ------------------YTALDIPKLLNMDTGALACEICDGELEEELNNESLTQ----- 220

Query: 266 DNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDLPVPEFGTLLAWEARASAAARGANGD 325
                 +H+   D+      QL+ ++EQL + +   +P F   LA      +A +G +  
Sbjct: 221 ----TAKHQ--SDLFS----QLRKIIEQLKKTEGHNIPLFARDLA----DLSADQGPSYT 280

Query: 326 LNGND-----PSKSSQGLGYGGTPMPFVGETKVEVAF-------SGAEGKGVDVKSESES 385
           +N N      P  S+  +  G      +  T   + F        G E     VK E++ 
Sbjct: 281 INTNSSLGMGPKPSAFPVAQGAATSHHIDPTNENIEFHVDILDTDGIEINKAVVKKENKK 340

Query: 386 TGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSSTNDDDKTNIQAPY 445
           TGL  LPPW++    N  K +   VK  S ++    +   ++++ ++  +  K  I   +
Sbjct: 341 TGLASLPPWLLPS--NSFKNR--NVKSNSILNNNQQTQTSTNEQPTAVKEQIK--IDQDF 400

Query: 446 YAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIEWEEAPI 505
           Y   +K   +  E+A       S +   N +N+ S                 IE  +   
Sbjct: 401 YINYIKTHYQEWESAP-----DSGDADGNGSNSGSG-------------GSTIEGNDGGN 403

Query: 506 GGNANDNYKVGDLNVEASASVEDEEEDDV 523
           G + N   K+ D    +S S  D++  D+
Sbjct: 461 GEHQNKKMKLDDSQTVSSMSQSDDDGKDI 403

[Close]

BLAST of Clc06G16160 vs. ExPASy TrEMBL
Match: A0A6J1E5J2 (Transcription initiation factor IIE subunit alpha OS=Cucurbita moschata OX=3662 GN=LOC111430131 PE=3 SV=1)

HSP 1 Score: 834.3 bits (2154), Expect = 2.8e-238
Identity = 448/532 (84.21%), Postives = 463/532 (87.03%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKL+TRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLVTRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAA+AATADGQHP K+GDEKIKMHTHSYCSLDYAQ+YDVVRYR+HRMKKK
Sbjct: 121 RETAKGAKIFSAAIAATADGQHPGKEGDEKIKMHTHSYCSLDYAQVYDVVRYRLHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLIS EDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISLEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGV+VKSESE+T LKVLPPWMIK+GMNLTKEQRGEVK +SKMDAGSASAQFSDDKKSS
Sbjct: 361 EGKGVNVKSESENTALKVLPPWMIKEGMNLTKEQRGEVKGDSKMDAGSASAQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAK Q+ELSSTEVTEN++ TNSSRQVGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKAQKELSSTEVTENLSYTNSSRQVGMKA 478

Query: 481 KREED-EDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREED E+DDIEWEEAPI GNAN+NYKVGDLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREEDEEEDDIEWEEAPIEGNANENYKVGDLNVEASASVEDEEEDDVDWEEG 478

[Close]

BLAST of Clc06G16160 vs. ExPASy TrEMBL
Match: A0A6J1JA07 (Transcription initiation factor IIE subunit alpha OS=Cucurbita maxima OX=3661 GN=LOC111484895 PE=3 SV=1)

HSP 1 Score: 831.2 bits (2146), Expect = 2.3e-237
Identity = 446/532 (83.83%), Postives = 462/532 (86.84%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKL+TRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLVTRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAAVAATADGQHP K+GDEKIKMHTHSYCSLDYAQ+YDVVRYR+HRMKKK
Sbjct: 121 RETAKGAKIFSAAVAATADGQHPGKEGDEKIKMHTHSYCSLDYAQVYDVVRYRLHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLIS EDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISLEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           E KGV+VKSESE+T LKVLPPWMIK+GMNLTKEQRGEVK ESKMDAGSASAQFSDDKKSS
Sbjct: 361 ESKGVNVKSESENTALKVLPPWMIKEGMNLTKEQRGEVKGESKMDAGSASAQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAKGQ+ELS TE+T+N++ TN+SRQVGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKGQKELSRTEITDNLSYTNASRQVGMKA 478

Query: 481 KREED-EDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREED E+DDIEWEEAPI GNAN+NYKVGDLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREEDEEEDDIEWEEAPIEGNANENYKVGDLNVEASASVEDEEEDDVDWEEG 478

[Close]

BLAST of Clc06G16160 vs. ExPASy TrEMBL
Match: A0A6J1BZ86 (Transcription initiation factor IIE subunit alpha OS=Momordica charantia OX=3673 GN=LOC111007077 PE=3 SV=1)

HSP 1 Score: 831.2 bits (2146), Expect = 2.3e-237
Identity = 450/532 (84.59%), Postives = 462/532 (86.84%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAAVAATADGQ P K+GDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK
Sbjct: 121 RETAKGAKIFSAAVAATADGQQPGKEGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLIS EDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISLEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQL+RVKDL
Sbjct: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLSRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGVDVKSE+E+TGLKVLPPWMIKKGMNLTKEQRGEVK+ESKMDAGSA AQFSDDKKSS
Sbjct: 361 EGKGVDVKSETENTGLKVLPPWMIKKGMNLTKEQRGEVKEESKMDAGSA-AQFSDDKKSS 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTN Q      YYAAILKKQQELEE+AK  +ELSSTEVTE+V+N NSSRQVGMKA
Sbjct: 421 ANDDDKTNFQDEYVKAYYAAILKKQQELEESAKRPEELSSTEVTESVSNANSSRQVGMKA 477

Query: 481 KRE-EDEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KRE ++EDDDIEWEEAPIGGNAN+NYKVGDLNVEASASVEDEEEDDVDWEEG
Sbjct: 481 KREGDEEDDDIEWEEAPIGGNANENYKVGDLNVEASASVEDEEEDDVDWEEG 477

[Close]

BLAST of Clc06G16160 vs. ExPASy TrEMBL
Match: A0A5D3DYI4 (Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00230 PE=3 SV=1)

HSP 1 Score: 824.7 bits (2129), Expect = 2.2e-235
Identity = 450/532 (84.59%), Postives = 459/532 (86.28%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAAVAATADGQH  K+GDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK
Sbjct: 121 RETAKGAKIFSAAVAATADGQHQTKEGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLISFEDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISFEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAA QGGDGDDNARKRRHEKLKDMLQKME QLKPL+EQLTRVKDL
Sbjct: 241 HCENCNGELVAESDKLAAVQGGDGDDNARKRRHEKLKDMLQKMEAQLKPLVEQLTRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARG NGDLNGNDPSKSSQ  GYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGVNGDLNGNDPSKSSQ--GYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           +GKGVDVKSES++TGLKVLPPWMIK+GMNLTKEQRGEVKDESK DAGSASAQFSDDKKS 
Sbjct: 361 DGKGVDVKSESKNTGLKVLPPWMIKQGMNLTKEQRGEVKDESKTDAGSASAQFSDDKKSL 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSRQVGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRQVGMKA 475

Query: 481 KREE-DEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREE D+DDDIEWEEAPIGGNAN+NYKV DLNVEASA VEDEEEDDVDWEEG
Sbjct: 481 KREEDDDDDDIEWEEAPIGGNANENYKV-DLNVEASALVEDEEEDDVDWEEG 475

[Close]

BLAST of Clc06G16160 vs. ExPASy TrEMBL
Match: A0A5A7UX12 (Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003550 PE=3 SV=1)

HSP 1 Score: 824.3 bits (2128), Expect = 2.9e-235
Identity = 450/532 (84.59%), Postives = 459/532 (86.28%), Query Frame = 0


Query: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCES 60
           MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT            
Sbjct: 1   MSIEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALT------------ 60

Query: 61  DELFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120
                                RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR
Sbjct: 61  ---------------------RRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHR 120

Query: 121 RETAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180
           RETAKGAKIFSAAVAATADGQH  K+GDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK
Sbjct: 121 RETAKGAKIFSAAVAATADGQHQTKEGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKK 180

Query: 181 LKDELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYF 240
           LKDELEDKNTVQEYICPNCSR                     RYTALDALRLISFEDEYF
Sbjct: 181 LKDELEDKNTVQEYICPNCSR---------------------RYTALDALRLISFEDEYF 240

Query: 241 HCENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDL 300
           HCENCNGELVAESDKLAA QGGDGDDNARKRRHEKLKDMLQKME QLKPL+EQLTRVKDL
Sbjct: 241 HCENCNGELVAESDKLAAVQGGDGDDNARKRRHEKLKDMLQKMEAQLKPLVEQLTRVKDL 300

Query: 301 PVPEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGA 360
           PVPEFGTLLAWEARASAAARG NGDLNGNDPSKSSQ  GYGGTPMPFVGETKVEVAFSGA
Sbjct: 301 PVPEFGTLLAWEARASAAARGVNGDLNGNDPSKSSQ--GYGGTPMPFVGETKVEVAFSGA 360

Query: 361 EGKGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSS 420
           EGKGVDVKSES++TGLKVLPPWMIK+GMNLTKEQRGEVKDESK DAGSASAQFSDDKKS 
Sbjct: 361 EGKGVDVKSESKNTGLKVLPPWMIKQGMNLTKEQRGEVKDESKTDAGSASAQFSDDKKSL 420

Query: 421 TNDDDKTNIQ----APYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKA 480
            NDDDKTNIQ      YYAAILKKQQELEEAAKGQQELSSTEVTE+VANTNSSR+VGMKA
Sbjct: 421 ANDDDKTNIQDEYVKAYYAAILKKQQELEEAAKGQQELSSTEVTESVANTNSSRRVGMKA 475

Query: 481 KREE-DEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEEG 528
           KREE D+DDDIEWEEAPIGGNAN+NYKV DLNVEASA VEDEEEDDVDWEEG
Sbjct: 481 KREEDDDDDDIEWEEAPIGGNANENYKV-DLNVEASALVEDEEEDDVDWEEG 475

[Close]

BLAST of Clc06G16160 vs. TAIR 10
Match: AT1G03280.1 (Transcription factor TFIIE, alpha subunit )

HSP 1 Score: 531.2 bits (1367), Expect = 9.6e-151
Identity = 317/537 (59.03%), Postives = 378/537 (70.39%), Query Frame = 0


Query: 3   IEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCESDE 62
           ++PF +LV+L ARAFYDD TTK DNQ K+ RSDNRGIA VVLDAL               
Sbjct: 13  LQPFVKLVRLVARAFYDDYTTKSDNQQKSARSDNRGIAAVVLDALA-------------- 72

Query: 63  LFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHRRE 122
                              RRQWVREEDLAK+L+LH+KQLR+ +R  EEEKLI RDHR+E
Sbjct: 73  -------------------RRQWVREEDLAKDLQLHAKQLRKIIRLFEEEKLIMRDHRKE 132

Query: 123 TAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKKLK 182
           TAKGAK++SAAVAAT DG+      ++K+K+HTHSYC LDYAQI DVVR+R+HRMKK+LK
Sbjct: 133 TAKGAKMYSAAVAATTDGR-----AEDKVKLHTHSYCCLDYAQICDVVRFRLHRMKKRLK 192

Query: 183 DELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYFHC 242
           DELEDKNTVQEY CPNC R                     +Y ALDALRLIS  D+ FHC
Sbjct: 193 DELEDKNTVQEYGCPNCQR---------------------KYNALDALRLISMVDDSFHC 252

Query: 243 ENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDLPV 302
           ENCNGELV E +KL + +  DGDDNAR+RR E LK+MLQK+EVQ+KPLM+QL RVKDLP+
Sbjct: 253 ENCNGELVVECNKLTSEEVVDGDDNARRRRRENLKNMLQKLEVQMKPLMDQLNRVKDLPI 312

Query: 303 PEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGAEG 362
           PEFG+ LAWEARA+ AAR  NGDLN NDP + SQG GYG TPMPF+GETKVEV       
Sbjct: 313 PEFGSFLAWEARAAMAAR-ENGDLNPNDPLR-SQG-GYGSTPMPFLGETKVEVNLGDG-- 372

Query: 363 KGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGS-ASAQFSDDKKSST 422
              DVKS+   + LKVLPPWMIK+GMNLT+EQRGE++ E+K+D G+ A+A+ SDDKKS+ 
Sbjct: 373 -NEDVKSKGGDSSLKVLPPWMIKEGMNLTEEQRGEMRQEAKVDGGAGAAAKLSDDKKSAI 432

Query: 423 NDDDKTNIQAPY---YAAILKKQQELEEAAKGQQELSSTEVTENV--ANTNSSRQVGMKA 482
            + D+ +++  Y   Y A L KQQEL  AA+  Q+ S+ E T  +      S RQV MKA
Sbjct: 433 GNGDEKDLKDEYLKAYYAELMKQQEL--AARRNQQESAGEPTSGIQSGTVYSGRQVSMKA 479

Query: 483 KREEDEDDD---IEWEE-APIGGNANDNYKVGDLNVEASAS--VEDEEEDDVDWEEG 528
           KREEDED+D   +EWEE AP+   AN NYKV DLNVEA AS   E+EEEDDVDWEEG
Sbjct: 493 KREEDEDEDEEEVEWEEKAPV--TANGNYKV-DLNVEAEASGGEEEEEEDDVDWEEG 479

[Close]

BLAST of Clc06G16160 vs. TAIR 10
Match: AT4G20340.1 (Transcription factor TFIIE, alpha subunit )

HSP 1 Score: 428.7 bits (1101), Expect = 6.7e-120
Identity = 267/533 (50.09%), Postives = 336/533 (63.04%), Query Frame = 0


Query: 3   IEPFNRLVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCESDE 62
           +EPF +LV+L  R FYD+ T + DNQ K+ + + +G AV+VLDALT              
Sbjct: 14  LEPFVKLVRLLVRIFYDNYTPESDNQQKSVK-NVKGSAVIVLDALT-------------- 73

Query: 63  LFYCHIFPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHRRE 122
                              RRQWVREEDLAK +K ++K+LR+ +R  EE+K + R HR+E
Sbjct: 74  -------------------RRQWVREEDLAKEVKRNAKELRKLIRHFEEQKFVMRYHRKE 133

Query: 123 TAKGAKIFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKKLK 182
           TAK AK++S AV  T DG+      ++ +K HTHSYC LDYAQIYD+VRY++HR+KKK K
Sbjct: 134 TAKRAKMYSYAVGGTTDGR-----AEDNVKFHTHSYCCLDYAQIYDIVRYKLHRLKKKFK 193

Query: 183 DELEDKNTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYFHC 242
           DELED+NTVQEY CPNC R                     +Y ALDALRLIS ED+ FHC
Sbjct: 194 DELEDRNTVQEYGCPNCKR---------------------KYNALDALRLISMEDDSFHC 253

Query: 243 ENCNGELVAESDKLAAAQGGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDLPV 302
           ENCNGELV E +KL + +  D  DNAR+R+ EK+K  LQ +E +LKPLME + RVKDLP 
Sbjct: 254 ENCNGELVMECNKLISEEVVDRGDNARRRQREKVKVWLQDLEGELKPLMELINRVKDLPF 313

Query: 303 PEFGTLLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGAEG 362
           P F    AWEARA+ AAR  NGD N +DPS+S    GYG TPMPF+GETKVEV     EG
Sbjct: 314 PAFEPFPAWEARAAKAAR-ENGDFNPDDPSRSLG--GYGSTPMPFLGETKVEVNL--GEG 373

Query: 363 KGVDVKSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKS--- 422
              DV S    + LK+LPPWMIK+GM LT+EQRGE++ E+ +D    +A+ SDDKKS   
Sbjct: 374 -NEDVTSTGGDSSLKMLPPWMIKQGMKLTEEQRGEMRQEANVD--GEAAKLSDDKKSVME 433

Query: 423 --STNDDDKTNIQAPYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAK 482
               N D K      YYAAI+++Q+   +  + +    ST      A T S RQVGMK+K
Sbjct: 434 NGDDNKDLKDEYLKAYYAAIMEQQKLAAKLNEQESAGESTTTDIESATTYSDRQVGMKSK 475

Query: 483 REEDEDDDIEWEEAPIGGNANDNYKVGDLNVEASASVEDE---EEDDVDWEEG 528
           REE E++D+EWEE      AN NYKV DLNVEA  + E E   E+DD+DWEEG
Sbjct: 494 REE-EEEDVEWEEG-ASVAANGNYKV-DLNVEAEEAEEKEDGDEDDDIDWEEG 475

[Close]

BLAST of Clc06G16160 vs. TAIR 10
Match: AT4G20810.1 (transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein )

HSP 1 Score: 355.1 bits (910), Expect = 9.4e-98
Identity = 232/519 (44.70%), Postives = 310/519 (59.73%), Query Frame = 0


Query: 9   LVKLAARAFYDDITTKGDNQPKTGRSDNRGIAVVVLDALTRSSHACFFFCESDELFYCHI 68
           +VKL A+ FYD+ T K +NQ K+ ++ + GIAV+VLDALT                    
Sbjct: 1   MVKLVAKTFYDNYTPKNNNQKKSAKNGSGGIAVLVLDALT-------------------- 60

Query: 69  FPLLIIFIVVSFPRRQWVREEDLAKNLKLHSKQLRRTLRFLEEEKLITRDHRRETAKGAK 128
                        RRQWVREEDLAK LKL++KQLR  LR+ EE++ I R HR+E +    
Sbjct: 61  -------------RRQWVREEDLAKELKLNTKQLRTILRYFEEQQFIMRVHRKEKS---- 120

Query: 129 IFSAAVAATADGQHPAKDGDEKIKMHTHSYCSLDYAQIYDVVRYRMHRMKKKLKDELEDK 188
                 +AT +G+     G++K+K+H +SYC LDY+QIYDV+RY++HRMKK+ KD LEDK
Sbjct: 121 ------SATTNGR-----GEDKVKVHMYSYCCLDYSQIYDVIRYKLHRMKKEFKDVLEDK 180

Query: 189 NTVQEYICPNCSRSTAQLLLTLSGSKLENLMILIRYTALDALRLISFEDEYFHCENCNGE 248
           + VQEY CPNC R                                     +FHCENCNGE
Sbjct: 181 DNVQEYGCPNCKRKI-----------------------------------FFHCENCNGE 240

Query: 249 LVAESDKLAAAQ-GGDGDDNARKRRHEKLKDMLQKMEVQLKPLMEQLTRVKDLPVPEFGT 308
           LV E +KL + +   DG DN R RR + LKD+LQ MEV+LKPLM+ + R+KDLPVP F +
Sbjct: 241 LVMECNKLTSEEVVVDGSDNPRSRR-DHLKDLLQNMEVRLKPLMDHINRIKDLPVPSFES 300

Query: 309 LLAWEARASAAARGANGDLNGNDPSKSSQGLGYGGTPMPFVGETKVEVAFSGAEGKGVDV 368
             AWE R + AAR  NGDLN +D  +  QG GYG TPMPF+GET++EV   G E + V  
Sbjct: 301 FPAWETRVAKAAR-ENGDLNPDDTLR-PQG-GYGSTPMPFLGETEIEVNL-GEENEDVKS 360

Query: 369 KSESESTGLKVLPPWMIKKGMNLTKEQRGEVKDESKMDAGSASAQFSDDKKSSTNDDDKT 428
               +S+  K+ P W+IKKGMNL+ EQRGE++ E+K D G +S +  DD ++  ++  K 
Sbjct: 361 DEVGDSSRRKLTPSWLIKKGMNLSDEQRGEIRHEAKADDGGSSMENGDDDRNLKDEYLKA 415

Query: 429 NIQAPYYAAILKKQQELEEAAKGQQELSSTEVTENVANTNSSRQVGMKAKREEDEDDDIE 488
                YYAAIL ++QEL E    Q+          +A ++S RQVGMK+KREE+E+    
Sbjct: 421 -----YYAAIL-EEQELAEKLNQQESAGKVTTDIELATSSSDRQVGMKSKREEEEE---- 415

Query: 489 WEEAPIGGNANDNYKVGDLNVEASASVEDEEEDDVDWEE 527
            EEA +   AN NYKV DLNVEA  +  +++E+DVDW+E
Sbjct: 481 -EEASVA--ANGNYKV-DLNVEAEEA--EQDENDVDWQE 415

The following BLAST results are available for this feature:

BLAST of Clc06G16160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880289.1	2.6e-243	86.44	general transcription factor IIE subunit 1 isoform X1 [Benincasa hispida]	[more]
XP_038880290.1	3.2e-241	86.25	general transcription factor IIE subunit 1 isoform X2 [Benincasa hispida]	[more]
XP_023515738.1	4.4e-238	84.21	general transcription factor IIE subunit 1-like [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022922068.1	5.7e-238	84.21	general transcription factor IIE subunit 1-like [Cucurbita moschata] >KAG6589563...	[more]
XP_022134956.1	4.8e-237	84.59	general transcription factor IIE subunit 1 [Momordica charantia]	[more]

BLAST of Clc06G16160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q557M8	1.0e-08	22.49	General transcription factor IIE subunit 1 OS=Dictyostelium discoideum OX=44689 ...	[more]

BLAST of Clc06G16160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5J2	2.8e-238	84.21	Transcription initiation factor IIE subunit alpha OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JA07	2.3e-237	83.83	Transcription initiation factor IIE subunit alpha OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1BZ86	2.3e-237	84.59	Transcription initiation factor IIE subunit alpha OS=Momordica charantia OX=3673...	[more]
A0A5D3DYI4	2.2e-235	84.59	Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7UX12	2.9e-235	84.59	Transcription initiation factor IIE subunit alpha OS=Cucumis melo var. makuwa OX...	[more]

BLAST of Clc06G16160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03280.1	9.6e-151	59.03	Transcription factor TFIIE, alpha subunit	[more]
AT4G20340.1	6.7e-120	50.09	Transcription factor TFIIE, alpha subunit	[more]
AT4G20810.1	9.4e-98	44.70	transcription initiation factor IIE (TFIIE) alpha subunit family protein / gener...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	COILS	Coil	Coil	coord: 273..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 321..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 387..428
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 448..472
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 444..527
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 390..404
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 511..527
IPR002853	Transcription initiation factor IIE subunit alpha, N-terminal	SMART	SM00531	tfiie3	coord: 71..263 e-value: 5.9E-46 score: 168.7
IPR039997	Transcription factor E	PANTHER	PTHR13097	TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT	coord: 78..507 coord: 5..50
IPR017919	Transcription factor TFE/TFIIEalpha HTH domain	PROSITE	PS51344	HTH_TFE_IIE	coord: 6..171 score: 30.33322
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 83..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G16160.2	Clc06G16160.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001113	transcription open complex formation at RNA polymerase II promoter
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005673	transcription factor TFIIE complex