Clc06G14620 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTTTTTCAGATTACTCATCGTCGAATCTAAGTTCGTTCCCACCATAGCTAAAAAGATAAAGAGAGAACTCTTCGATTTATAGCGTTCAAATTTCATCTGCTGTTCTTCGCATGGCCCGAATTCTATCACTTTCCCAATCTTTCATCTCCTCCAAGTTGCAATCTGCGCCATTGAAATTATCTCTGTTGATTCCGTCTTCCTTTGCCCTCGGTCATCGGAACCGCTCTACACGTTCCGGCAAGGTCAAATTCATCGAAATTGACCTCGAATCGTCCTCTTTCGGGCCTGATTCAGAGGTTCTTGCTATTAGGAAGCTCGACGACTTTGTACAGAAGATTATCGTTGAGCGATCGACTCCAGATTGGCTTCCGTTTGTGCCCGGTTCGTCATTTTGGGTTCCTCCACGCCGTACCAAACCACGCAGGGTGGTCGACCTATTCGATAAATTGGTTGAACCCATCATCAAGGAGGATTCCCCTTCCCTTGCTAACGCCCGTGGTTGGCCCTGCCTAGATTTTTTCGCCAAAGGTATATATGCAATTTACGTTTTTTTTCCCGATCGGTTTACGTTTAGCGGTTGATTAATGCGGGATTGATGATTAAAATTTGTGATTTTTAGGCATCGTTAGTTCTTCACGTGTACTATGATAGGGAATTTGTGTTATTCGCAATTAATTCAGTGATTGAATTTCCGGATGTTCTTCTAAATTGGAGTGGTAAATCAACCGTCTTTTTGTTTGAATGTAAAACACTACTGTTTCGTTGGTGCATATGAATTGGGATGATACTTGTGATAGGTTTATTTGATGGCGTGGGACGATCTAATTCGAATTGTTTCAATTAGAGAACAGCGGTATCATTGTCTCTTCTTTTAGGTTTTACAATGCAATTAGCTAGCTGACCTTAAAAGCTTTGGTTGCAAAGTTGTTCTTGAGTTTTATAGTTTCTGAAATTGTGCTGTAGAAGCCTACCATAAGGTTTCATTTATTGTGACAAGGTTTTGTATGTGAAGAAAGTTCACATTTGCTTACTGCAATTTACCCAAAAAAAAAAAAAAGGTTGAGTACGTGTGAACAATCTGAGGTCATATCTCAGTTGAATCTTAATTCAAAATCATAATTTGCAGTTGCACTCAGGATGTAAAAACATGTGAGGGAATACTGTATGATATGTTTATGGTTTATGTCAACATGTTACTAGTCACATGATTTTGTAGTTTTGAGTTGTGAATCTGTGAGGACTTCAAATTCCAGATGACTGAGAGTAGTGCTTCTGATAACATTTAGATTGCAATTCATCAAGCATTACTAGATTACAGAGAATAAGAAACCCCCGGTCATTTGCTCCAACCCCCCAACTTCTTGATCTGTTTACTTTGGTTGTCTTCCACTTTATCTAATTCCAGTTTCTCTGTTTCTTGTTATTAATTAGAACTTATTCTGGCGGCTGGTTGAGATATGGGCACATAATCATAATGATGATTGTGTTCACTGACATAGTAATTTGGTTTGGTCTAGCTCTGACTATTTAATGGTTCATCTGGCCTAAGAAATGCAATGTTTTTGTTGCGAGACTTACAGCACTCAATAAGGTGTAGGATAACGTTCCTTTCTTCTAGGTATCATGCCTTGTCAAAGCCAAAGTAAGAATGTTAGTATTAACTTTTCTGTTTTTATAAATACACAACATTGTTTCTACCATATTTCAATTTGTGCTATCCTTGCACAGGGCTATGCTAATCTTTTCTGTATTGTTCTAATTTTACCTGATGTCCTTGAAAGGACTATGCATTCAGTAGTGTTGCCTAACTTGCAAATATTGGATTTGACTGGAGCTTGAAAATCTCCGCTTTAATTTGTTAGATATAGTGATCAGCATAAGGATATGTTTGATTAAATGAATCCAAGTTATAACTTTTACTTTCCAGCCTGAGTTTCTGTTGGCTACGAGGTTATAGTTTGAATAATAGTATTCCCAGCCTTCCAGTCTGTAGCCTGAATAAATGTATTTCATCTTTCGTAATTCTATTTTTTGTCAACATTTATAAATTTGTCTCTTTTTATCTTGGGCATTCATTTTTTGTATCGTCTGTATGTGTTCCTTTACCTTATCTCATTGAAGTTTGAATCTTTGTTAAAAAAAATGCTGTATTCCCAGCTAAAAGCCTCATGCAATGATTACAGTGATGCAAGTCCAGTAGTTCACAATCAAGCATGCAAAGTGAAATGTTATTATCGCCCATTTGGTGAATGGGGATAGGAATCAAAATTTCAAAATATTTGCATCTGTTTTGGCAGTTAAGTTGTTAAAATTTCGCCTTAAAAACTGAGCTTATTCAATCTATGTTGGCCACCTACCTAGGAATTAGTATCGTACGATCTTTGACACCCATAGTTGTAGGGTCAGGTGGGTTGTCTTGTGAGATTAGTCGAGGTGCGCGTAAGCTGGCCCAGACACTCACGGATTAAAAAAAAAACTGAGCTTATTGCAGACCATTAAAGCCTTTTTTATACACATCTTTCAACATTTTTTACCAATTATATTAATGGGAAGATGACATTTTTACTTGAATGTAGAGTCTATCTCTGGAGCAACTCGATTGGCTCCTGTAGATACTGAGTTGGAAACTTCAAATGAGGTGGAGTTGGAGATTGAGGTGAAGACAACAAGTACAGATAACTCAAGCCAGCCCGAGGATTGAGATAGAAGAACCTCATACCTCATCCACTAATGCAGTTGGGTAGGTAATTTGGCATTGTGAACAAGTCCAGATTGTTGAAGTATCTAATATATCAATGTGCAGATGGTCTGGCAAGCAAAGGTACTGTTCTTAATTTATATGGTTCACCTTTGTAGGTTCATTAGATGGTTTCGGAGATTCGAGAGACCGAATAGAGTGGAAAGTGATGGCGCCGAGAGGTCAGATAGAAATGGGATGCTCTACAGATGGTTCCAGTTTGACTGCTGTGGTACTCACTTCCATTTGCTTCGTCTAAACTGCCCTGTCTATTTAGAGCCCACTCTGCACCCCTCCCCAAACTAATGGTTGTTTATGCTTCGTTGTTTTTGGACTGATTACTTTAGGATCTCCATATTCACCAGCTTGTTATTTAAATGAGGTGAATTATCAACCCCTGTCCTATCAAATCTATGCACAGCTACAATAAGAATTCTTCATGTATGTATAAAGTAACTAAATTGTTTTCCATTTCAAGTGCTTGAAGATCAATCTAAGTTCGTAGTTGCAATATTTTCTAGACTGGTCGG TTTTTTTTTCAGATTACTCATCGTCGAATCTAAGTTCGTTCCCACCATAGCTAAAAAGATAAAGAGAGAACTCTTCGATTTATAGCGTTCAAATTTCATCTGCTGTTCTTCGCATGGCCCGAATTCTATCACTTTCCCAATCTTTCATCTCCTCCAAGTTGCAATCTGCGCCATTGAAATTATCTCTGTTGATTCCGTCTTCCTTTGCCCTCGGTCATCGGAACCGCTCTACACGTTCCGGCAAGGTCAAATTCATCGAAATTGACCTCGAATCGTCCTCTTTCGGGCCTGATTCAGAGGTTCTTGCTATTAGGAAGCTCGACGACTTTGTACAGAAGATTATCGTTGAGCGATCGACTCCAGATTGGCTTCCGTTTGTGCCCGGTTCGTCATTTTGGGTTCCTCCACGCCGTACCAAACCACGCAGGGTGGTCGACCTATTCGATAAATTGGTTGAACCCATCATCAAGGAGGATTCCCCTTCCCTTGCTAACGCCCGTGGTTGGCCCTGCCTAGATTTTTTCGCCAAAGAGTCTATCTCTGGAGCAACTCGATTGGCTCCTGTAGATACTGAGTTGGAAACTTCAAATGAGGTGGAGTTGGAGATTGAGGTGAAGACAACAAGTTCATTAGATGGTTTCGGAGATTCGAGAGACCGAATAGAGTGGAAAGTGATGGCGCCGAGAGGTCAGATAGAAATGGGATGCTCTACAGATGGTTCCAGTTTGACTGCTGTGGTACTCACTTCCATTTGCTTCGTCTAAACTGCCCTGTCTATTTAGAGCCCACTCTGCACCCCTCCCCAAACTAATGGTTGTTTATGCTTCGTTGTTTTTGGACTGATTACTTTAGGATCTCCATATTCACCAGCTTGTTATTTAAATGAGGTGAATTATCAACCCCTGTCCTATCAAATCTATGCACAGCTACAATAAGAATTCTTCATGTATGTATAAAGTAACTAAATTGTTTTCCATTTCAAGTGCTTGAAGATCAATCTAAGTTCGTAGTTGCAATATTTTCTAGACTGGTCGG ATGGCCCGAATTCTATCACTTTCCCAATCTTTCATCTCCTCCAAGTTGCAATCTGCGCCATTGAAATTATCTCTGTTGATTCCGTCTTCCTTTGCCCTCGGTCATCGGAACCGCTCTACACGTTCCGGCAAGGTCAAATTCATCGAAATTGACCTCGAATCGTCCTCTTTCGGGCCTGATTCAGAGGTTCTTGCTATTAGGAAGCTCGACGACTTTGTACAGAAGATTATCGTTGAGCGATCGACTCCAGATTGGCTTCCGTTTGTGCCCGGTTCGTCATTTTGGGTTCCTCCACGCCGTACCAAACCACGCAGGGTGGTCGACCTATTCGATAAATTGGTTGAACCCATCATCAAGGAGGATTCCCCTTCCCTTGCTAACGCCCGTGGTTGGCCCTGCCTAGATTTTTTCGCCAAAGAGTCTATCTCTGGAGCAACTCGATTGGCTCCTGTAGATACTGAGTTGGAAACTTCAAATGAGGTGGAGTTGGAGATTGAGGTGAAGACAACAAGTTCATTAGATGGTTTCGGAGATTCGAGAGACCGAATAGAGTGGAAAGTGATGGCGCCGAGAGGTCAGATAGAAATGGGATGCTCTACAGATGGTTCCAGTTTGACTGCTGTGGTACTCACTTCCATTTGCTTCGTCTAA MARILSLSQSFISSKLQSAPLKLSLLIPSSFALGHRNRSTRSGKVKFIEIDLESSSFGPDSEVLAIRKLDDFVQKIIVERSTPDWLPFVPGSSFWVPPRRTKPRRVVDLFDKLVEPIIKEDSPSLANARGWPCLDFFAKESISGATRLAPVDTELETSNEVELEIEVKTTSSLDGFGDSRDRIEWKVMAPRGQIEMGCSTDGSSLTAVVLTSICFV Homology
BLAST of Clc06G14620 vs. NCBI nr
Match: XP_038880607.1 (uncharacterized protein LOC120072253 [Benincasa hispida]) HSP 1 Score: 318.5 bits (815), Expect = 4.3e-83 Identity = 164/181 (90.61%), Postives = 167/181 (92.27%), Query Frame = 0
BLAST of Clc06G14620 vs. NCBI nr
Match: KAG6587735.1 (hypothetical protein SDJN03_16300, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021702.1 hypothetical protein SDJN02_15429 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 318.2 bits (814), Expect = 5.6e-83 Identity = 161/181 (88.95%), Postives = 168/181 (92.82%), Query Frame = 0
BLAST of Clc06G14620 vs. NCBI nr
Match: XP_022974211.1 (uncharacterized protein LOC111472830 isoform X1 [Cucurbita maxima] >XP_022974215.1 uncharacterized protein LOC111472830 isoform X1 [Cucurbita maxima]) HSP 1 Score: 317.0 bits (811), Expect = 1.3e-82 Identity = 161/181 (88.95%), Postives = 167/181 (92.27%), Query Frame = 0
BLAST of Clc06G14620 vs. NCBI nr
Match: XP_022932487.1 (uncharacterized protein LOC111438888 isoform X1 [Cucurbita moschata] >XP_022932493.1 uncharacterized protein LOC111438888 isoform X1 [Cucurbita moschata]) HSP 1 Score: 315.8 bits (808), Expect = 2.8e-82 Identity = 160/181 (88.40%), Postives = 167/181 (92.27%), Query Frame = 0
BLAST of Clc06G14620 vs. NCBI nr
Match: XP_023531265.1 (uncharacterized protein LOC111793559 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531266.1 uncharacterized protein LOC111793559 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 313.9 bits (803), Expect = 1.1e-81 Identity = 159/181 (87.85%), Postives = 166/181 (91.71%), Query Frame = 0
BLAST of Clc06G14620 vs. ExPASy TrEMBL
Match: A0A6J1IDD9 (uncharacterized protein LOC111472830 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472830 PE=4 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 6.1e-83 Identity = 161/181 (88.95%), Postives = 167/181 (92.27%), Query Frame = 0
BLAST of Clc06G14620 vs. ExPASy TrEMBL
Match: A0A6J1EWU2 (uncharacterized protein LOC111438888 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438888 PE=4 SV=1) HSP 1 Score: 315.8 bits (808), Expect = 1.4e-82 Identity = 160/181 (88.40%), Postives = 167/181 (92.27%), Query Frame = 0
BLAST of Clc06G14620 vs. ExPASy TrEMBL
Match: A0A6J1E5F5 (uncharacterized protein LOC111430102 OS=Cucurbita moschata OX=3662 GN=LOC111430102 PE=4 SV=1) HSP 1 Score: 302.8 bits (774), Expect = 1.2e-78 Identity = 153/181 (84.53%), Postives = 163/181 (90.06%), Query Frame = 0
BLAST of Clc06G14620 vs. ExPASy TrEMBL
Match: A0A6J1C135 (uncharacterized protein LOC111007300 OS=Momordica charantia OX=3673 GN=LOC111007300 PE=4 SV=1) HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78 Identity = 149/174 (85.63%), Postives = 163/174 (93.68%), Query Frame = 0
BLAST of Clc06G14620 vs. ExPASy TrEMBL
Match: A0A6J1JIU5 (uncharacterized protein LOC111484840 OS=Cucurbita maxima OX=3661 GN=LOC111484840 PE=4 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77 Identity = 151/181 (83.43%), Postives = 162/181 (89.50%), Query Frame = 0
BLAST of Clc06G14620 vs. TAIR 10
Match: AT1G78890.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22 Identity = 67/171 (39.18%), Postives = 94/171 (54.97%), Query Frame = 0
BLAST of Clc06G14620 vs. TAIR 10
Match: AT2G19180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 102.8 bits (255), Expect = 3.5e-22 Identity = 48/121 (39.67%), Postives = 77/121 (63.64%), Query Frame = 0
BLAST of Clc06G14620 vs. TAIR 10
Match: AT1G16840.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 91.7 bits (226), Expect = 8.0e-19 Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 0
BLAST of Clc06G14620 vs. TAIR 10
Match: AT1G16840.4 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 90.5 bits (223), Expect = 1.8e-18 Identity = 61/169 (36.09%), Postives = 92/169 (54.44%), Query Frame = 0
BLAST of Clc06G14620 vs. TAIR 10
Match: AT1G16840.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 90.5 bits (223), Expect = 1.8e-18 Identity = 61/169 (36.09%), Postives = 92/169 (54.44%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|