Clc06G11005 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G11005
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ty3/gypsy retrotransposon protein
Location	ClcChr06: 19411668 .. 19417102 (+)
RNA-Seq Expression	Clc06G11005
Synteny	Clc06G11005

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGTTGGTATCTGAAATGTTGTCGTCAGGGATTATAAGAACTAACGCGAGTCCTTACTCTAGTCTAGTGCTATTGGTGAAGAAAAAGGACAGAGAGGATGGAGGTTTTGCGTTGATTACCAAGCATTAAACACTGACTATACCCAATAAATTTCCAATACCAGTTGTGGAAGAATTGTTTGATGAGTTGAATGGAGCAGTTTGGTTTTTGAAGATAGACTTAAAATCCAGATCATCAAATCAAGATGCATCCAGCTGATGTGGAGAAGACTGCTTTTCGTACCCATGAAGGTCATAACGAGTTCTTAGTGATGCCTTTTGGGTTAACAAATGCACCTTCAACTTTTCAGGCATTGATGAACAAGGTGTTTAAACCATATTTGAGGAATTTTCTATTGGTACTTTCTTACGATATCTTAGACTACAGCAAGGACTTGGAGGAGCATGTGCAACATTTGAATGAGTTGTATGCTAATCGTACAAAGTGTCAGTTTATGCGTGGGAGAATTGAATATTTGGGACATTTGATCTCTGGAAAATGGGTGGAGGCTGATCCAGAGAAGGTGCGAGCTGTTTTGGAATGGCCAACACCTACGTGTTCATGAAGTTTGTGGTTTTTTGGGGTTAACAAGGTGATTTGTTCAAAATTATGGTCGTTTGGCTGCTCCTTTGTCTCAATTGTTGAAAAAGGGAGCTTATCAATGGTCTGCTGAGGCATAGGAAGCTTCTGAAAGATTGAAAATTGCCATGGTGAAGTTATCGGTATTGATTCTACCAGATTTCAGCGAGCAGTTTGAGATTGAAACTGATGCTTCGGGTTTTGGTTTTGGTGCCGTTTTGATGCAGAAGAGACATCCAATTGCTTATTTTAGTCATACGTTGTCAACTAGTGATCGGGGCAAGCTAGTGTATGAAAGGGAATTGATGGTTGTGGTCATGGCGGTGCAACAATGGCGACCATATTTGTTGGGGAAAAAGTTTGTGGTGAGGACAGATCAAAAAGCTCTCAAGTATTTGTTGGAGCAAAAGGTGATTCAACCACAACATCAAAGGTGGCTATCAAAATTACCTGGATAAGATTTTGAGGTTGTTTATCATCCAAGGGTGGAGAATAAGCTGCTGATGCGTTATCTATCTAGAATGCCTGAAGGTGTAGAACTGGCTAATCTGACCGTGCCAACGTTGTTAGATGTGGTTGTAATCAAGGAAGAAGTATGCTGGGATCCTAAGTTGATGGAAATAATTCAAAAATTGTGGGTTGATGAAGATAATGTCTCTAATTTCTCCTTACATCGGGTAATGCTGAAATACAAAGGTCGGCTGGTCGTTTCAAAGTCATCTTTGTTGCCGTCAATACTTCATACTTATCATGATTCGGTGTTTGGTGGGCATTCGGGGTTCTTACGTATGTATAAAAGATTGATTGGAGAGTTATATTGGGAGGGTATGAAGCAAGACGTGAAAAAATATGTGGGAGAGTGTTCAGTTTGTCAAAAAAAACAAATCTTTGGCTATGTCGCCTGCGAGGTTGTTATTACCGTTGAGTATACCATATGCTATTTGGGAAGATGTATCCATGGATTTTATCGAGGGATTACCGAAGTCTCAAGGGTATGATGTTATTTTTGTGGTGGTAGATAGATTGACTAAATATAGTCACTTCGTTGGTCTTAAACATCCATTTTCTGCAAGGTTGTTGCTGATGTATTTGTAAATGAGGTTGTACGTCTTCATGGCTATCCTAAGTCAATTGTTTCTGACAGAGATAAGGTGTTTTCGAGTCAATTTTGGCAGGAATTGTTTCGTTTGGCTGTAACTCAACTACATCGTAGTACTTGCTTATCACCCACAATCCGATGAACAAACGAAGGCGGTGAATAAGTGTGTGGAAGCTTATTTGCGTTGTTTCTGTGGAGAATGTCCTACATAGTGGTACTCGTGGTTGCATTGGGCAGAATATTGGTATAACACTAAATATCATATATTAGCAGTTTATGGTTGACTTTCACTCACATTAATTTCTTACCAGGTGATCAAGCTACTTCCAACTCCAATCTGGACCAGCAGTTGCGTGCAAGAGATGTAATGTTGGGCGTTTTGAAAGAGCATTTGAGAGACGTTCAAGAGAGGATGAAGAAGTTTGCGGATAGGAAGAGGAGGGAGGTTGAATTTGAGGTAGGTGATCTAGTATACCTGAAACTTCGTCCGTATAGACAATCTTCAATGATGGCATAGAGGAACGAGAAATTGTCTCCTAAGTATTTTGGTCCATGCTATATTGAAGCAAGGGTCGAAAAACTGGCTTATCGACTGAAATTACCAGTGCTTCTATTCACCCGGTATTTCATGTTCCTTAGCTTAAAAAAGCACTAGAACCGCAGAAGGTCATGCAATTAGAGTTGCCTATGTTTTCAAAGTTGTTTGAATGGGTGATTGAGCCTCAGGAGGTGTATGGCTATCGCAAGAATCCATCAACAGGTGGTTGGGTGGTGCTGATTGGGTGGAAAGGGCTATTATTGACGATTTTCAGCAACAATTTCCTGCTTTTCACCTCGAGGGACAAGGTGAATTTGGAGGGGGAAAGTAATGTTAGGCCTCCAATTGTGTATCAACTCTCCTCCCCCCTCTTCTCCCTCCTCCACCTCCCCTCCGGTGATTCTCCTCCTTACCGACAGCTTCCGTACTTGCCAACCAAGACTCCGTTATTAGATAGTCGCCTTGTCAAGCATTCGTCATGGAAGTAGTCAATTGCAAGATTAATGGACTTTTCTTCTGTACTTGGTTTGAAGATGGTAATTTCATAATATAAGACATGGAAGTTAGAAAAGCAATTTACTTATCAAAATCGCATTTGCTTTGGATGGTGAAGCAAATTTCAGAACTCCTCAACGGTTCAAGTGTCCGTTTTTTCTTAAGGGAAGTGCATAACGACTCGGGAGCAATGATATTATCAAAATTCAAGAGTAAGATGGGTTGGAATCTTAGATGTGTAGTTTGGCCCGTTACCGGCGGTCGTTTCATTATTCATGTACCAGGAGGGACAGCGCAACAAGGATGGACTGAATTTTTGGGGATGATTAATAGCTTCATTATTCGAATTGGGTGTTATACAGACTTTTCAGCAAAAAAGGAGTTGCTTCAGCCGAGCTTTGTAGACGTTTTAACAAAAGGAGAGAGCCATCATAATCATTCTGCTCAGGATTTCACTCTAGGGCAACCAAACTCCTCTGCTTTTCACAATAAACAGAGCACATATCTTGGATGGATCAAAAAGGAAAAAGAAGTGTTTAAGGAAGATTTCGAAAATTTGTGGGTGGTTTCAAGGTTGTTTGCTTTCAATGAATGGAAAGATATTGTCAGTTTTTTGGAGGGTCTCTATCAAACTAAAATCAGCATTAACCCTCTGTTTGCAGATAAGGCCTTGATTAAAATATCAAATTTAGAAAAGATCATCGTAACACCTGGAAGATGGTTTAATTATCGTAAGTTCCATCTTTTATTTGAAAAATGGAATTCAATTCAACATAGTAGGCCTACTTGCATAAAAGGTTATGGAGGTTGGTTGATAAATAGAAACTTGCCGCTAGAATACTGGTGCAGAGCAACCTTTGAAACTATCGGATCCCATTTCGGAGGTTTGGAAAGATATAGCATTAGAAACTCTCAATCTTTTGAATGTGTCAGAAGCAAAAATTAAAATTAAAAGGAATTTATGTGGTTTTATGCCTGCTTCTATTGAAATTAAAAATGTTATGAGAGGCTCTATTTTTTTAAATTTTGGGGATGTCGAAGTCATGGAAGGTCCGCCTCACGCTCAAAAGGATTTATTTTTTAAAGATTTCATTAATCCAATCGACCAAAACCGGTTGAGTAAAGTTGCAGAGGATGAAGAGGCATGTAGTTTGGTATCAAAATGTATCAGATTAGGTAGATTTGTGCCCCTCTCGCTGGAGATGCTGCCGGAAAGCTCGAAAAAGGTTGACTATCCCGAGCCAGTTCCAAAGTTTCGAGATGAAATGATTAGTTTCGAAGAAATTGAAGAAGTCGAAAAGTCAAGCAAAACAGTTCAAATTCCAGCGTCCACTGATCTCCTCTTAATGGAAAATGAGGAAATTAATGCTTCTCGGGTACTTTCATCCCAAGTTTCAACAAGTTTTTCGGGGGAGAGCATGCCAACTGGTTAGTTTGGAGGGCGTGAAGGGAAGCTTTCCGAAAAGACAGAATCTTTGTTGAAAAGAGAAAATGACAGCTATTTTCTTGATTGCACCAACAATAGCATTAAAAATAAATAAGATTTCGAAGAGGCCATTGACTTTCCAACCGAAGGATTCGAGGAGGCTGCTGGCATTCCAACCACGGGAATCAAGGCTAGCATTGAAAGGAATTATGATCTCACGAATCAACCACCTGATTTATTAGGCAAATATCCTTCTCACATCAATGTCCACCACTTTATTGCTTGGAATAATAACTTTAAAAGTAATTCAGCATTTAATAGGGCTGTTGATATCCCATCCGAAAATTTCAAGGCTAGCATTAAAGACCATTTTATTCCCACAAACCAGCCACCAGATTTATTAGGCAAAGATCCTTCCCCTTCCTAAGGATTAATTAATTAAGAGCCAAAGTGCCTCCTCATTGGATTATTCGAAATTATTAAAGCCTTTTCCTCTTCATTTCTCAAGAAAAAAAAGCTCCATTAGTGTTGTCGTGGCTGCTTCTTCCAACCCCGATCTGTTGGAGAGTTGCTGCACCCGAGCCCAATTTCTGCCTCACCCGATTAGGTCTGAAAACCCCACTTCTCCTCCTTTTCTCTTCAAGAAATCCACTCTTACCTTGCCCTAATTCAAATTCTACATTTTTAAGAAGTACTCGTTGCATCTCACATGGTTCTAATCTAAGAATTGAAAAAGATTCCAACATTGGTTCAATAGCAAGTGTTAGCAGTGAGGATTTAGATGATTTTGAAACATTAGATCATCACGAGGTTTCGGATCAACTTAAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAACCTCCTAACGAATTAGAATTCAGCAACCATTCTTTCATTTCCCCTAATCGTCCGAAATTGCCGGCACATTTGGCATCCTTCGTTGAAGATTGTGGTCATCTTTGGATAGACCATGAAGCCTCTCGTAATTTGTTGATGTTTTAGTTTGCCAAGCTTCTAAAGGATTTGTGTGTTTGGCAACTTTACACCATAATTTTTGTTCAAGTCACGGATTTTTGGATATACTTGGAAAGCTTGTGTGGTTCGCTTCAAGAGAAAAGTTGAGTTTCATTGAAGCTGGGATTTATTTTCGCCTTTCCTTATCAAATTACTGCTTGGATTCATGGTGTTTCGGTGATCATTTGGAGGTCTTATCGACCAAAGAAGGGGTTACAACGGCTTGA

mRNA sequence

ATGGAAAAGTTGGTATCTGAAATGTTGTCGTCAGGGATTATAAGAACTAACGCGAGTCCTTACTCTAGTCTAGTGCTATTGGTGAAGAAAAAGGACAGAGAGGATGGAGATCATCAAATCAAGATGCATCCAGCTGATGTGGAGAAGACTGCTTTTCGTACCCATGAAGGTCATAACGAGTTCTTAGTGATGCCTTTTGGGTTAACAAATGCACCTTCAACTTTTCAGGCATTGATGAACAAGGTGTTTAAACCATATTTGAGGAATTTTCTATTGGTACTTTCTTACGATATCTTAGACTACAGCAAGGACTTGGAGGAGCATGTGCAACATTTGAATGAGTTGTATGCTAATCGTACAAAGTGTCAGTTTATGCGTGGGAGAATTGAATATTTGGGACATTTGATCTCTGGAAAATGGGTGGAGGCTGATCCAGAGAAGGAAGCTTCTGAAAGATTGAAAATTGCCATGGTGAAGTTATCGGTATTGATTCTACCAGATTTCAGCGAGCAGTTTGAGATTGAAACTGATGCTTCGGGTTTTGGTTTTGGTGCCGTTTTGATGCAGAAGAGACATCCAATTGCTTATTTTAGTCATACGTTGTCAACTAGTGATCGGGGCAAGCTAGTGTATGAAAGGGAATTGATGGTTGTGGTCATGGCGGTGCAACAATGGCGACCATATTTGTTGGGGAAAAAGTTTGTGGTGAGGACAGATCAAAAAGCTCTCAAGTATTTGTTGGAGCAAAAGGTGATTCAACCACAACATCAAAGGGTGGAGAATAAGCTGCTGATGCGTTATCTATCTAGAATGCCTGAAGGTGTAGAACTGGCTAATCTGACCGTGCCAACGTTGTTAGATGTGGTTGTAATCAAGGAAGAAGTATGCTGGGATCCTAAGTTGATGGAAATAATTCAAAAATTGTGGGTTGATGAAGATAATGTCTCTAATTTCTCCTTACATCGGGTAATGCTGAAATACAAAGGTCGGCTGGTCGTTTCAAAGTCATCTTTGTTGCCGTCAATACTTCATACTTATCATGATTCGGTGTTTGGTGGGCATTCGGGGTTCTTACGTATGTATAAAAGATTGATTGGAGAGTTATATTGGGAGGGTATGAAGCAAGACGTGAAAAAATATGTGGGAGAGTTGTTATTACCGTTGAGTATACCATATGCTATTTGGGAAGATGTATCCATGGATTTTATCGAGGGATTACCGAAGTCTCAAGGGTATGATGTTATTTTTGTGGTGGTTGTTGCTGATGTATTTGTAAATGAGGTTGTACGTCTTCATGGCTATCCTAAGTCAATTGTTTCTGACAGAGATAAGGTGTTTTCGAGTCAATTTTGGCAGGAATTGTTTCGTTTGGCTCTTATTTGCGTTGTTTCTGTGGAGAATGTCCTACATAGTGGTACTCGTGGTTGCATTGGGCAGAATATTGGTGATCAAGCTACTTCCAACTCCAATCTGGACCAGCAGTTGCGTGCAAGAGATGTAATGTTGGGCGTTTTGAAAGAGCATTTGAGAGACGTTCAAGAGAGGATGAAGAAGTTTGCGGATAGGAAGAGGAGGGAGGTTGAATTTGAGGTAGGTGATCTAGTATACCTGAAACTTCGTCCCAAGGGTCGAAAAACTGGCTTATCGACTGAAATTACCAGTGCTTCTATTCACCCGAAGGTCATGCAATTAGAGTTGCCTATGTTTTCAAAGTTGTTTGAATGGGTGATTGAGCCTCAGGAGGTGTATGGCTATCGCAAGAATCCATCAACAGGTGGTTGGGTGGTGCTGATTGGGTGGAAAGGGCTATTATTGACGATTTTCAGCAACAATTTCCTGCTTTTCACCTCGAGGGACAAGGTGAATTTGGAGGGGGAAAGTAATGTTAGGCCTCCAATTGTGTATCAACTCTCCTCCCCCCTCTTCTCCCTCCTCCACCTCCCCTCCGGTGATTCTCCTCCTTACCGACAGCTTCCGTACTTGCCAACCAAGACTCCGTTATTAGATAGTCGCCTTGTCAAGCATTCGTCATGGAAGGAAGTGCATAACGACTCGGGAGCAATGATATTATCAAAATTCAAGAGTAAGATGGGTTGGAATCTTAGATGTGTAGTTTGGCCCGTTACCGGCGGTCGTTTCATTATTCATGTACCAGGAGGGACAGCGCAACAAGGATGGACTGAATTTTTGGGGATGATTAATAGCTTCATTATTCGAATTGGGTGTTATACAGACTTTTCAGCAAAAAAGGAGTTGCTTCAGCCGAGCTTTGTAGACGTTTTAACAAAAGGAGAGAGCCATCATAATCATTCTGCTCAGGATTTCACTCTAGGGCAACCAAACTCCTCTGCTTTTCACAATAAACAGAGCACATATCTTGGATGGATCAAAAAGGAAAAAGAAGTGTTTAAGGAAGATTTCGAAAATTTGTGGGTGGTTTCAAGGTTGTTTGCTTTCAATGAATGGAAAGATATTGTCAGTTTTTTGGAGGGTCTCTATCAAACTAAAATCAGCATTAACCCTCTGTTTGCAGATAAGGCCTTGATTAAAATATCAAATTTAGAAAAGATCATCGTAACACCTGGAAGATGGTTTAATTATCGTAAGTTCCATCTTTTATTTGAAAAATGGAATTCAATTCAACATAGTAGGCCTACTTGCATAAAAGGTTATGGAGGTTGGTTGATAAATAGAAACTTGCCGCTAGAATACTGGTGCAGAGCAACCTTTGAAACTATCGGATCCCATTTCGGAGTCATGGAAGGTCCGCCTCACGCTCAAAAGGATTTATTTTTTAAAGATTTCATTAATCCAATCGACCAAAACCGGTTGAGTAAAGTTGCAGAGGATGAAGAGGCATGTAGTTTGATGCTGCCGGAAAGCTCGAAAAAGGTTGACTATCCCGAGCCAGTTCCAAAGTTTCGAGATGAAATGATTAGTTTCGAAGAAATTGAAGAAGTCGAAAAGTCAAGCAAAACAGTTCAAATTCCAGCGTCCACTGATCTCCTCTTAATGGAAAATGAGGAAATTAATGCTTCTCGGGTACTTTCATCCCAAGTTTCAACAAGTTTTTCGGGGGAGAGCATGCCAACTGATTTCGAAGAGGCCATTGACTTTCCAACCGAAGGATTCGAGGAGGCTGCTGGCATTCCAACCACGGGAATCAAGGCTAGCATTGAAAGGAATTATGATCTCACGAATCAACCACCTGATTTATTAGGCAAATATCCTTCTCACATCAATCCCAATTTCTGCCTCACCCGATTAGGTCTGAAAACCCCACTTCTCCTCCTTTTCTCTTCAAGAAATCCACTCTTACCTTGCCCTAATTCAAATTCTACATTTTTAAGAAGTACTCGTTGCATCTCACATGGTTCTAATCTAAGAATTGAAAAAGATTCCAACATTGGTTCAATAGCAAGTGTTAGCAGTGAGGATTTAGATGATTTTGAAACATTAGATCATCACGAGGTTTCGGATCAACTTAAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAACCTCCTAACGAATTAGAATTCAGCAACCATTCTTTCATTTCCCCTAATCGTCCGAAATTGCCGGCACATTTGGCATCCTTCGTTGAAGATTGTGGTCATCTTTGGATAGACCATGAAGCCTCTCGTAATTTAGAAAAGTTGAGTTTCATTGAAGCTGGGATTTATTTTCGCCTTTCCTTATCAAATTACTGCTTGGATTCATGGTGTTTCGGTGATCATTTGGAGGTCTTATCGACCAAAGAAGGGGTTACAACGGCTTGA

Coding sequence (CDS)

ATGGAAAAGTTGGTATCTGAAATGTTGTCGTCAGGGATTATAAGAACTAACGCGAGTCCTTACTCTAGTCTAGTGCTATTGGTGAAGAAAAAGGACAGAGAGGATGGAGATCATCAAATCAAGATGCATCCAGCTGATGTGGAGAAGACTGCTTTTCGTACCCATGAAGGTCATAACGAGTTCTTAGTGATGCCTTTTGGGTTAACAAATGCACCTTCAACTTTTCAGGCATTGATGAACAAGGTGTTTAAACCATATTTGAGGAATTTTCTATTGGTACTTTCTTACGATATCTTAGACTACAGCAAGGACTTGGAGGAGCATGTGCAACATTTGAATGAGTTGTATGCTAATCGTACAAAGTGTCAGTTTATGCGTGGGAGAATTGAATATTTGGGACATTTGATCTCTGGAAAATGGGTGGAGGCTGATCCAGAGAAGGAAGCTTCTGAAAGATTGAAAATTGCCATGGTGAAGTTATCGGTATTGATTCTACCAGATTTCAGCGAGCAGTTTGAGATTGAAACTGATGCTTCGGGTTTTGGTTTTGGTGCCGTTTTGATGCAGAAGAGACATCCAATTGCTTATTTTAGTCATACGTTGTCAACTAGTGATCGGGGCAAGCTAGTGTATGAAAGGGAATTGATGGTTGTGGTCATGGCGGTGCAACAATGGCGACCATATTTGTTGGGGAAAAAGTTTGTGGTGAGGACAGATCAAAAAGCTCTCAAGTATTTGTTGGAGCAAAAGGTGATTCAACCACAACATCAAAGGGTGGAGAATAAGCTGCTGATGCGTTATCTATCTAGAATGCCTGAAGGTGTAGAACTGGCTAATCTGACCGTGCCAACGTTGTTAGATGTGGTTGTAATCAAGGAAGAAGTATGCTGGGATCCTAAGTTGATGGAAATAATTCAAAAATTGTGGGTTGATGAAGATAATGTCTCTAATTTCTCCTTACATCGGGTAATGCTGAAATACAAAGGTCGGCTGGTCGTTTCAAAGTCATCTTTGTTGCCGTCAATACTTCATACTTATCATGATTCGGTGTTTGGTGGGCATTCGGGGTTCTTACGTATGTATAAAAGATTGATTGGAGAGTTATATTGGGAGGGTATGAAGCAAGACGTGAAAAAATATGTGGGAGAGTTGTTATTACCGTTGAGTATACCATATGCTATTTGGGAAGATGTATCCATGGATTTTATCGAGGGATTACCGAAGTCTCAAGGGTATGATGTTATTTTTGTGGTGGTTGTTGCTGATGTATTTGTAAATGAGGTTGTACGTCTTCATGGCTATCCTAAGTCAATTGTTTCTGACAGAGATAAGGTGTTTTCGAGTCAATTTTGGCAGGAATTGTTTCGTTTGGCTCTTATTTGCGTTGTTTCTGTGGAGAATGTCCTACATAGTGGTACTCGTGGTTGCATTGGGCAGAATATTGGTGATCAAGCTACTTCCAACTCCAATCTGGACCAGCAGTTGCGTGCAAGAGATGTAATGTTGGGCGTTTTGAAAGAGCATTTGAGAGACGTTCAAGAGAGGATGAAGAAGTTTGCGGATAGGAAGAGGAGGGAGGTTGAATTTGAGGTAGGTGATCTAGTATACCTGAAACTTCGTCCCAAGGGTCGAAAAACTGGCTTATCGACTGAAATTACCAGTGCTTCTATTCACCCGAAGGTCATGCAATTAGAGTTGCCTATGTTTTCAAAGTTGTTTGAATGGGTGATTGAGCCTCAGGAGGTGTATGGCTATCGCAAGAATCCATCAACAGGTGGTTGGGTGGTGCTGATTGGGTGGAAAGGGCTATTATTGACGATTTTCAGCAACAATTTCCTGCTTTTCACCTCGAGGGACAAGGTGAATTTGGAGGGGGAAAGTAATGTTAGGCCTCCAATTGTGTATCAACTCTCCTCCCCCCTCTTCTCCCTCCTCCACCTCCCCTCCGGTGATTCTCCTCCTTACCGACAGCTTCCGTACTTGCCAACCAAGACTCCGTTATTAGATAGTCGCCTTGTCAAGCATTCGTCATGGAAGGAAGTGCATAACGACTCGGGAGCAATGATATTATCAAAATTCAAGAGTAAGATGGGTTGGAATCTTAGATGTGTAGTTTGGCCCGTTACCGGCGGTCGTTTCATTATTCATGTACCAGGAGGGACAGCGCAACAAGGATGGACTGAATTTTTGGGGATGATTAATAGCTTCATTATTCGAATTGGGTGTTATACAGACTTTTCAGCAAAAAAGGAGTTGCTTCAGCCGAGCTTTGTAGACGTTTTAACAAAAGGAGAGAGCCATCATAATCATTCTGCTCAGGATTTCACTCTAGGGCAACCAAACTCCTCTGCTTTTCACAATAAACAGAGCACATATCTTGGATGGATCAAAAAGGAAAAAGAAGTGTTTAAGGAAGATTTCGAAAATTTGTGGGTGGTTTCAAGGTTGTTTGCTTTCAATGAATGGAAAGATATTGTCAGTTTTTTGGAGGGTCTCTATCAAACTAAAATCAGCATTAACCCTCTGTTTGCAGATAAGGCCTTGATTAAAATATCAAATTTAGAAAAGATCATCGTAACACCTGGAAGATGGTTTAATTATCGTAAGTTCCATCTTTTATTTGAAAAATGGAATTCAATTCAACATAGTAGGCCTACTTGCATAAAAGGTTATGGAGGTTGGTTGATAAATAGAAACTTGCCGCTAGAATACTGGTGCAGAGCAACCTTTGAAACTATCGGATCCCATTTCGGAGTCATGGAAGGTCCGCCTCACGCTCAAAAGGATTTATTTTTTAAAGATTTCATTAATCCAATCGACCAAAACCGGTTGAGTAAAGTTGCAGAGGATGAAGAGGCATGTAGTTTGATGCTGCCGGAAAGCTCGAAAAAGGTTGACTATCCCGAGCCAGTTCCAAAGTTTCGAGATGAAATGATTAGTTTCGAAGAAATTGAAGAAGTCGAAAAGTCAAGCAAAACAGTTCAAATTCCAGCGTCCACTGATCTCCTCTTAATGGAAAATGAGGAAATTAATGCTTCTCGGGTACTTTCATCCCAAGTTTCAACAAGTTTTTCGGGGGAGAGCATGCCAACTGATTTCGAAGAGGCCATTGACTTTCCAACCGAAGGATTCGAGGAGGCTGCTGGCATTCCAACCACGGGAATCAAGGCTAGCATTGAAAGGAATTATGATCTCACGAATCAACCACCTGATTTATTAGGCAAATATCCTTCTCACATCAATCCCAATTTCTGCCTCACCCGATTAGGTCTGAAAACCCCACTTCTCCTCCTTTTCTCTTCAAGAAATCCACTCTTACCTTGCCCTAATTCAAATTCTACATTTTTAAGAAGTACTCGTTGCATCTCACATGGTTCTAATCTAAGAATTGAAAAAGATTCCAACATTGGTTCAATAGCAAGTGTTAGCAGTGAGGATTTAGATGATTTTGAAACATTAGATCATCACGAGGTTTCGGATCAACTTAAAGTTACTGGAGAAGATATCAATGCCTTGTTCTCTCAGAATGAACCTCCTAACGAATTAGAATTCAGCAACCATTCTTTCATTTCCCCTAATCGTCCGAAATTGCCGGCACATTTGGCATCCTTCGTTGAAGATTGTGGTCATCTTTGGATAGACCATGAAGCCTCTCGTAATTTAGAAAAGTTGAGTTTCATTGAAGCTGGGATTTATTTTCGCCTTTCCTTATCAAATTACTGCTTGGATTCATGGTGTTTCGGTGATCATTTGGAGGTCTTATCGACCAAAGAAGGGGTTACAACGGCTTGA

Protein sequence

MEKLVSEMLSSGIIRTNASPYSSLVLLVKKKDREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQALMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHLNELYANRTKCQFMRGRIEYLGHLISGKWVEADPEKEASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRHPIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVIQPQHQRVENKLLMRYLSRMPEGVELANLTVPTLLDVVVIKEEVCWDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVSKSSLLPSILHTYHDSVFGGHSGFLRMYKRLIGELYWEGMKQDVKKYVGELLLPLSIPYAIWEDVSMDFIEGLPKSQGYDVIFVVVVADVFVNEVVRLHGYPKSIVSDRDKVFSSQFWQELFRLALICVVSVENVLHSGTRGCIGQNIGDQATSNSNLDQQLRARDVMLGVLKEHLRDVQERMKKFADRKRREVEFEVGDLVYLKLRPKGRKTGLSTEITSASIHPKVMQLELPMFSKLFEWVIEPQEVYGYRKNPSTGGWVVLIGWKGLLLTIFSNNFLLFTSRDKVNLEGESNVRPPIVYQLSSPLFSLLHLPSGDSPPYRQLPYLPTKTPLLDSRLVKHSSWKEVHNDSGAMILSKFKSKMGWNLRCVVWPVTGGRFIIHVPGGTAQQGWTEFLGMINSFIIRIGCYTDFSAKKELLQPSFVDVLTKGESHHNHSAQDFTLGQPNSSAFHNKQSTYLGWIKKEKEVFKEDFENLWVVSRLFAFNEWKDIVSFLEGLYQTKISINPLFADKALIKISNLEKIIVTPGRWFNYRKFHLLFEKWNSIQHSRPTCIKGYGGWLINRNLPLEYWCRATFETIGSHFGVMEGPPHAQKDLFFKDFINPIDQNRLSKVAEDEEACSLMLPESSKKVDYPEPVPKFRDEMISFEEIEEVEKSSKTVQIPASTDLLLMENEEINASRVLSSQVSTSFSGESMPTDFEEAIDFPTEGFEEAAGIPTTGIKASIERNYDLTNQPPDLLGKYPSHINPNFCLTRLGLKTPLLLLFSSRNPLLPCPNSNSTFLRSTRCISHGSNLRIEKDSNIGSIASVSSEDLDDFETLDHHEVSDQLKVTGEDINALFSQNEPPNELEFSNHSFISPNRPKLPAHLASFVEDCGHLWIDHEASRNLEKLSFIEAGIYFRLSLSNYCLDSWCFGDHLEVLSTKEGVTTA

Homology

[Close]

BLAST of Clc06G11005 vs. NCBI nr
Match: KAA0050511.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 625.2 bits (1611), Expect = 1.3e-174
Identity = 400/900 (44.44%), Postives = 483/900 (53.67%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EML+SGIIR + SPYSS VLLV+K+                             
Sbjct: 739  MERLVDEMLTSGIIRPSKSPYSSPVLLVRKRDGSWRFCVDYRALNNVTIPDKFPIPVIEE 798

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 799  LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 858

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ +EEH+QHL          ELY N  KC F + R
Sbjct: 859  LMNQVFKPYLRRFVLVFFDDILVYSQGMEEHLQHLEVVLGLLQEKELYVNMEKCSFAKPR 918

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 919  ISYLGHFISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 978

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDFS  FEIE+DASGFG GAVL Q R 
Sbjct: 979  QLLKKGAYKWGEEEEAAFGKLKRAMMTLPVLTMPDFSLPFEIESDASGFGVGAVLTQCRK 1038

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + VYEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LKYLLEQ+V+
Sbjct: 1039 PVAYFSKTLSIRDRSRPVYERELIAVVLAVQRWRPYLLGRKFTVKTDQRSLKYLLEQRVV 1098

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+    +L  +T P L+DV ++KEE  
Sbjct: 1099 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRITPTAQLNQITAPALIDVEILKEETR 1158

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVS-KSSLLPSILHTYHDSVFGGHS 480
             DP L EII+ +      + +++L + +LK+KGRLVVS KS+LLP+ILHTYHDSVFGGHS
Sbjct: 1159 QDPALREIIRLIEEQGMEIPHYTLQQGVLKFKGRLVVSNKSTLLPTILHTYHDSVFGGHS 1218

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+DV +Y  E                LL+PL IP AIW D+S
Sbjct: 1219 GFLRTYKRLTGEIYWKGMKRDVMRYCEECAICQRNKSSALTPAGLLMPLEIPDAIWSDIS 1278

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVI VVV                    VA+ F+ EVVRLHGYP+SIV
Sbjct: 1279 MDFIEGLPKSKGWDVILVVVDRLSKYSHFLLLKHPFTAKMVAETFIKEVVRLHGYPRSIV 1338

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   SVE  L            
Sbjct: 1339 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGEKPQEWS 1398

[Close]

BLAST of Clc06G11005 vs. NCBI nr
Match: KAA0058186.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 625.2 bits (1611), Expect = 1.3e-174
Identity = 401/900 (44.56%), Postives = 485/900 (53.89%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EMLSSGIIR + SPYSS VLLV+KK                             
Sbjct: 693  MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTISDKFPIPVIEE 752

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 753  LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 812

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ ++EHVQHL          ELY N  KC F + R
Sbjct: 813  LMNQVFKPYLRRFVLVFFDDILIYSRGMDEHVQHLEVVLGLLQDRELYVNMEKCSFAKPR 872

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 873  ISYLGHFISEQGLEADPEKIRAVSDWPTPSNVREVRGFLGLTGYYRRFVKNYGAIAAPLT 932

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDF+  FEIE+DASG G GAVL Q R 
Sbjct: 933  QLLKKGAFKWDAEAEGAFSKLKKAMMTLPVLAMPDFNLPFEIESDASGVGVGAVLTQCRK 992

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + +YEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LK+LLEQ+V+
Sbjct: 993  PVAYFSKTLSMRDRARPIYERELLAVVLAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVV 1052

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+   V L  +T P ++DV +IK+E  
Sbjct: 1053 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRVSPAVHLNQITAPPMIDVEIIKDETR 1112

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVV-SKSSLLPSILHTYHDSVFGGHS 480
             DP L E I +L  +   + +++LH+ +LK+KGRLV+ SKS+LLP+ILHTYHDSVFGGHS
Sbjct: 1113 LDPALQE-ITRLIQEGMEIPHYTLHQGVLKFKGRLVIPSKSTLLPTILHTYHDSVFGGHS 1172

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+D+ +Y  E                LL+PL IPYAIW D+S
Sbjct: 1173 GFLRTYKRLTGEIYWKGMKKDIMRYCEECAICQRNKSSALSPAGLLMPLEIPYAIWSDIS 1232

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVIFVVV                    VA+ FV EVVRLHGYP+SIV
Sbjct: 1233 MDFIEGLPKSKGWDVIFVVVDRLSKYGHFLLLKHPFSAKMVAETFVKEVVRLHGYPRSIV 1292

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   S+E  L            
Sbjct: 1293 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSIETYLRCFCGEKPNEWS 1352

[Close]

BLAST of Clc06G11005 vs. NCBI nr
Match: TYK24654.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 1.6e-174
Identity = 400/900 (44.44%), Postives = 482/900 (53.56%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EML+SGIIR + SPYSS VLLV+K+                             
Sbjct: 980  MERLVDEMLTSGIIRPSKSPYSSPVLLVRKRDGSWRFCVDYRALNNVTIPDKFPIPVIEE 1039

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 1040 LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 1099

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ +EEH QHL          ELY N  KC F + R
Sbjct: 1100 LMNQVFKPYLRRFVLVFFDDILVYSRGMEEHFQHLEVVLGLLQAKELYVNMEKCSFAKPR 1159

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 1160 ISYLGHFISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 1219

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDFS  FEIE+DASGFG GAVL Q R 
Sbjct: 1220 QLLKKGAYKWGEEEEAAFGKLKRAMMTLPVLTMPDFSLPFEIESDASGFGVGAVLTQCRK 1279

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + VYEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LKYLLEQ+V+
Sbjct: 1280 PVAYFSKTLSIRDRSRPVYERELIAVVLAVQRWRPYLLGRKFTVKTDQRSLKYLLEQRVV 1339

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+    +L  +T P L+DV ++KEE  
Sbjct: 1340 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRITPTAQLNQITAPALIDVEILKEETR 1399

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVS-KSSLLPSILHTYHDSVFGGHS 480
             DP L EII+ +      + +++L + +LK+KGRLVVS KS+LLP+ILHTYHDSVFGGHS
Sbjct: 1400 QDPALREIIRLIEEQGMEIPHYTLQQGVLKFKGRLVVSNKSTLLPTILHTYHDSVFGGHS 1459

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+DV +Y  E                LL+PL IP AIW D+S
Sbjct: 1460 GFLRTYKRLTGEIYWKGMKRDVMRYCEECAICQRNKSSALTPAGLLMPLEIPDAIWSDIS 1519

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVI VVV                    VA+ F+ EVVRLHGYP+SIV
Sbjct: 1520 MDFIEGLPKSKGWDVILVVVDRLSKYSHFLLLKHPFTAKMVAETFIKEVVRLHGYPRSIV 1579

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   SVE  L            
Sbjct: 1580 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGEKPQEWS 1639

[Close]

BLAST of Clc06G11005 vs. NCBI nr
Match: TYK06572.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 624.8 bits (1610), Expect = 1.6e-174
Identity = 400/900 (44.44%), Postives = 482/900 (53.56%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EML+SGIIR + SPYSS VLLV+K+                             
Sbjct: 739  MERLVDEMLTSGIIRPSKSPYSSPVLLVRKRDGSWRFCVDYRALNNVTIPDKFPIPVIEE 798

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 799  LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 858

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ +EEH QHL          ELY N  KC F + R
Sbjct: 859  LMNQVFKPYLRRFVLVFFDDILVYSRGMEEHFQHLEVVLGLLQAKELYVNMEKCSFAKPR 918

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 919  ISYLGHFISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 978

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDFS  FEIE+DASGFG GAVL Q R 
Sbjct: 979  QLLKKGAYKWGEEEEAAFGKLKRAMMTLPVLTMPDFSLPFEIESDASGFGVGAVLTQCRK 1038

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + VYEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LKYLLEQ+V+
Sbjct: 1039 PVAYFSKTLSIRDRSRPVYERELIAVVLAVQRWRPYLLGRKFTVKTDQRSLKYLLEQRVV 1098

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+    +L  +T P L+DV ++KEE  
Sbjct: 1099 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRITPTAQLNQITAPALIDVEILKEETR 1158

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVS-KSSLLPSILHTYHDSVFGGHS 480
             DP L EII+ +      + +++L + +LK+KGRLVVS KS+LLP+ILHTYHDSVFGGHS
Sbjct: 1159 QDPALREIIRLIEEQGMEIPHYTLQQGVLKFKGRLVVSNKSTLLPTILHTYHDSVFGGHS 1218

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+DV +Y  E                LL+PL IP AIW D+S
Sbjct: 1219 GFLRTYKRLTGEIYWKGMKRDVMRYCEECAICQRNKSSALTPAGLLMPLEIPDAIWSDIS 1278

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVI VVV                    VA+ F+ EVVRLHGYP+SIV
Sbjct: 1279 MDFIEGLPKSKGWDVILVVVDRLSKYSHFLLLKHPFTAKMVAETFIKEVVRLHGYPRSIV 1338

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   SVE  L            
Sbjct: 1339 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGEKPQEWS 1398

[Close]

BLAST of Clc06G11005 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 623.6 bits (1607), Expect = 3.7e-174
Identity = 399/900 (44.33%), Postives = 485/900 (53.89%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EMLSSGIIR + SPYSS VLLV+KK                             
Sbjct: 638  MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 697

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+MHP D+EKTAFRTHEGH EF+VMPFGLTNAPSTFQA
Sbjct: 698  LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 757

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKP+LR F+LV   DIL YSK +EEH QHL         +ELYAN  KC F + R
Sbjct: 758  LMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRESELYANFDKCHFAKTR 817

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS K +E DPEK                                         
Sbjct: 818  ISYLGHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLT 877

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A E+LK AM+ L VL +PDF+  FEIE+DASGFG GAVL+Q + 
Sbjct: 878  QLLKSGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKK 937

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS  LST DR + VYERELM VV AVQ+WRPYLLG+KF V+TDQ++LK+LLEQ+VI
Sbjct: 938  PVAYFSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVI 997

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+     L  LT P LLDV VI++EV 
Sbjct: 998  QPQYQQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVR 1057

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVSK-SSLLPSILHTYHDSVFGGHS 480
             DP L EI+  +      + +++ H+ +LK+KGRLV+SK S+L+P+I+HTYHDSVFGGHS
Sbjct: 1058 KDPALREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHS 1117

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKR+ GELYW+GMK+DV+KY  E                LLLPL IP AIW D+S
Sbjct: 1118 GFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDIS 1177

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS G++VI VVV                    VA+VFV EVVRLHG+PKSIV
Sbjct: 1178 MDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVAEVFVKEVVRLHGFPKSIV 1237

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDK+F S FW E+F+LA                   +   SVE  L            
Sbjct: 1238 SDRDKIFISHFWSEMFKLAGTKLNRSSSYHPQTDGQTEVVNKSVEAYLRCFCGEKPRDWS 1297

[Close]

BLAST of Clc06G11005 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-35
Identity = 105/365 (28.77%), Postives = 156/365 (42.74%), Query Frame = 0


Query: 1   MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
           +E  + +ML+ GIIRT+ SPY+S + +V KK                             
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 61  -------------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAP 120
                              D   G HQI+M P  V KTAF T  GH E+L MPFGL NAP
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAP 342

Query: 121 STFQALMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHLN---------ELYANRTKCQ 180
           +TFQ  MN + +P L    LV   DI+ +S  L+EH+Q L           L     KC+
Sbjct: 343 ATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCE 402

Query: 181 FMRGRIEYLGHLISGKWVEADPEK------------------------------------ 240
           F++    +LGH+++   ++ +PEK                                    
Sbjct: 403 FLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADI 462

Query: 241 ----------------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGA 251
                                  A ++LK  + +  +L +PDF+++F + TDAS    GA
Sbjct: 463 AKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGA 522

[Close]

BLAST of Clc06G11005 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-34
Identity = 101/361 (27.98%), Postives = 154/361 (42.66%), Query Frame = 0


Query: 1   MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
           +E  V EML+ G+IR + SPY+S   +V KK                             
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 61  -------------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAP 120
                              D   G HQI+M    + KTAF T  GH E+L MPFGL NAP
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 121 STFQALMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHLNELYANRT---------KCQ 180
           +TFQ  MN + +P L    LV   DI+ +S  L EH+  +  ++             KC+
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401

Query: 181 FMRGRIEYLGHLISGKWVEADPEK------------------------------------ 240
           F++    +LGH+++   ++ +P K                                    
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461

Query: 241 ----------------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGA 247
                                 EA E+LK  +++  +L LPDF ++F + TDAS    GA
Sbjct: 462 AKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGA 521

[Close]

BLAST of Clc06G11005 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.9e-34
Identity = 164/711 (23.07%), Postives = 280/711 (39.38%), Query Frame = 0


Query: 30   KKDREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQALMNKVFKPYLRN 89
            K D +   H I++   D  K AFR   G  E+LVMP+G++ AP+ FQ  +N +      +
Sbjct: 500  KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559

Query: 90   FLLVLSYDILDYSKDLEEHVQHLNE---------LYANRTKCQFMRGRIEYLGHLISGK- 149
             ++    DIL +SK   EHV+H+ +         L  N+ KC+F + +++++G+ IS K 
Sbjct: 560  HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619

Query: 150  --------------------------------------------------------WVEA 209
                                                                    W   
Sbjct: 620  FTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWT 679

Query: 210  DPEKEASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKR-----HPIAYFS 269
              + +A E +K  +V   VL   DFS++  +ETDAS    GAVL QK      +P+ Y+S
Sbjct: 680  PTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYS 739

Query: 270  HTLSTSDRGKLVYERELMVVVMAVQQWRPYLLG--KKFVVRTDQKALKYLLEQKVIQPQH 329
              +S +     V ++E++ ++ +++ WR YL    + F + TD + L   +  +  +P++
Sbjct: 740  AKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNE-SEPEN 799

Query: 330  QRVE--NKLLMRYLSRMPEGVELANLTVPTLLDVVVIKEEVCWDPKLMEIIQKLWVDEDN 389
            +R+      L  +   +      AN     L  +V   E +   PK  E     +V++ +
Sbjct: 800  KRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPI---PKDSEDNSINFVNQIS 859

Query: 390  VSNFSLHRVMLKY------------------------KGRLVVSKSSLL--------PSI 449
            +++   ++V+ +Y                         G L+ SK  +L         +I
Sbjct: 860  ITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTI 919

Query: 450  LHTYHDSVFGGHSGFLRMYKRLIGELYWEGMKQDVKKYVGEL----------------LL 509
            +  YH+     H G   +   ++    W+G+++ +++YV                   L 
Sbjct: 920  IKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQ 979

Query: 510  PLSIPYAIWEDVSMDFIEGLPKSQGYDVIFVVV--------------------VADVFVN 544
            P+      WE +SMDFI  LP+S GY+ +FVVV                     A +F  
Sbjct: 980  PIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQ 1039

[Close]

BLAST of Clc06G11005 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.9e-34
Identity = 164/711 (23.07%), Postives = 280/711 (39.38%), Query Frame = 0


Query: 30   KKDREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQALMNKVFKPYLRN 89
            K D +   H I++   D  K AFR   G  E+LVMP+G++ AP+ FQ  +N +      +
Sbjct: 500  KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559

Query: 90   FLLVLSYDILDYSKDLEEHVQHLNE---------LYANRTKCQFMRGRIEYLGHLISGK- 149
             ++    DIL +SK   EHV+H+ +         L  N+ KC+F + +++++G+ IS K 
Sbjct: 560  HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619

Query: 150  --------------------------------------------------------WVEA 209
                                                                    W   
Sbjct: 620  FTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWT 679

Query: 210  DPEKEASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKR-----HPIAYFS 269
              + +A E +K  +V   VL   DFS++  +ETDAS    GAVL QK      +P+ Y+S
Sbjct: 680  PTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYS 739

Query: 270  HTLSTSDRGKLVYERELMVVVMAVQQWRPYLLG--KKFVVRTDQKALKYLLEQKVIQPQH 329
              +S +     V ++E++ ++ +++ WR YL    + F + TD + L   +  +  +P++
Sbjct: 740  AKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNE-SEPEN 799

Query: 330  QRVE--NKLLMRYLSRMPEGVELANLTVPTLLDVVVIKEEVCWDPKLMEIIQKLWVDEDN 389
            +R+      L  +   +      AN     L  +V   E +   PK  E     +V++ +
Sbjct: 800  KRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPI---PKDSEDNSINFVNQIS 859

Query: 390  VSNFSLHRVMLKY------------------------KGRLVVSKSSLL--------PSI 449
            +++   ++V+ +Y                         G L+ SK  +L         +I
Sbjct: 860  ITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTI 919

Query: 450  LHTYHDSVFGGHSGFLRMYKRLIGELYWEGMKQDVKKYVGEL----------------LL 509
            +  YH+     H G   +   ++    W+G+++ +++YV                   L 
Sbjct: 920  IKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQ 979

Query: 510  PLSIPYAIWEDVSMDFIEGLPKSQGYDVIFVVV--------------------VADVFVN 544
            P+      WE +SMDFI  LP+S GY+ +FVVV                     A +F  
Sbjct: 980  PIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQ 1039

[Close]

BLAST of Clc06G11005 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.9e-34
Identity = 164/711 (23.07%), Postives = 280/711 (39.38%), Query Frame = 0


Query: 30   KKDREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQALMNKVFKPYLRN 89
            K D +   H I++   D  K AFR   G  E+LVMP+G++ AP+ FQ  +N +      +
Sbjct: 500  KLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKES 559

Query: 90   FLLVLSYDILDYSKDLEEHVQHLNE---------LYANRTKCQFMRGRIEYLGHLISGK- 149
             ++    DIL +SK   EHV+H+ +         L  N+ KC+F + +++++G+ IS K 
Sbjct: 560  HVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619

Query: 150  --------------------------------------------------------WVEA 209
                                                                    W   
Sbjct: 620  FTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWT 679

Query: 210  DPEKEASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKR-----HPIAYFS 269
              + +A E +K  +V   VL   DFS++  +ETDAS    GAVL QK      +P+ Y+S
Sbjct: 680  PTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYS 739

Query: 270  HTLSTSDRGKLVYERELMVVVMAVQQWRPYLLG--KKFVVRTDQKALKYLLEQKVIQPQH 329
              +S +     V ++E++ ++ +++ WR YL    + F + TD + L   +  +  +P++
Sbjct: 740  AKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNE-SEPEN 799

Query: 330  QRVE--NKLLMRYLSRMPEGVELANLTVPTLLDVVVIKEEVCWDPKLMEIIQKLWVDEDN 389
            +R+      L  +   +      AN     L  +V   E +   PK  E     +V++ +
Sbjct: 800  KRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPI---PKDSEDNSINFVNQIS 859

Query: 390  VSNFSLHRVMLKY------------------------KGRLVVSKSSLL--------PSI 449
            +++   ++V+ +Y                         G L+ SK  +L         +I
Sbjct: 860  ITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTI 919

Query: 450  LHTYHDSVFGGHSGFLRMYKRLIGELYWEGMKQDVKKYVGEL----------------LL 509
            +  YH+     H G   +   ++    W+G+++ +++YV                   L 
Sbjct: 920  IKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQ 979

Query: 510  PLSIPYAIWEDVSMDFIEGLPKSQGYDVIFVVV--------------------VADVFVN 544
            P+      WE +SMDFI  LP+S GY+ +FVVV                     A +F  
Sbjct: 980  PIPPSERPWESLSMDFITALPESSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQ 1039

[Close]

BLAST of Clc06G11005 vs. ExPASy TrEMBL
Match: A0A5A7UAE4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001550 PE=4 SV=1)

HSP 1 Score: 625.2 bits (1611), Expect = 6.1e-175
Identity = 400/900 (44.44%), Postives = 483/900 (53.67%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EML+SGIIR + SPYSS VLLV+K+                             
Sbjct: 739  MERLVDEMLTSGIIRPSKSPYSSPVLLVRKRDGSWRFCVDYRALNNVTIPDKFPIPVIEE 798

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 799  LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 858

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ +EEH+QHL          ELY N  KC F + R
Sbjct: 859  LMNQVFKPYLRRFVLVFFDDILVYSQGMEEHLQHLEVVLGLLQEKELYVNMEKCSFAKPR 918

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 919  ISYLGHFISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 978

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDFS  FEIE+DASGFG GAVL Q R 
Sbjct: 979  QLLKKGAYKWGEEEEAAFGKLKRAMMTLPVLTMPDFSLPFEIESDASGFGVGAVLTQCRK 1038

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + VYEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LKYLLEQ+V+
Sbjct: 1039 PVAYFSKTLSIRDRSRPVYERELIAVVLAVQRWRPYLLGRKFTVKTDQRSLKYLLEQRVV 1098

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+    +L  +T P L+DV ++KEE  
Sbjct: 1099 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRITPTAQLNQITAPALIDVEILKEETR 1158

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVS-KSSLLPSILHTYHDSVFGGHS 480
             DP L EII+ +      + +++L + +LK+KGRLVVS KS+LLP+ILHTYHDSVFGGHS
Sbjct: 1159 QDPALREIIRLIEEQGMEIPHYTLQQGVLKFKGRLVVSNKSTLLPTILHTYHDSVFGGHS 1218

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+DV +Y  E                LL+PL IP AIW D+S
Sbjct: 1219 GFLRTYKRLTGEIYWKGMKRDVMRYCEECAICQRNKSSALTPAGLLMPLEIPDAIWSDIS 1278

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVI VVV                    VA+ F+ EVVRLHGYP+SIV
Sbjct: 1279 MDFIEGLPKSKGWDVILVVVDRLSKYSHFLLLKHPFTAKMVAETFIKEVVRLHGYPRSIV 1338

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   SVE  L            
Sbjct: 1339 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGEKPQEWS 1398

[Close]

BLAST of Clc06G11005 vs. ExPASy TrEMBL
Match: A0A5A7UVI2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005060 PE=4 SV=1)

HSP 1 Score: 625.2 bits (1611), Expect = 6.1e-175
Identity = 401/900 (44.56%), Postives = 485/900 (53.89%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EMLSSGIIR + SPYSS VLLV+KK                             
Sbjct: 693  MERLVDEMLSSGIIRPSKSPYSSPVLLVRKKDGSWRFCVDYRALNNVTISDKFPIPVIEE 752

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 753  LFDELKGASVFSKLDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 812

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ ++EHVQHL          ELY N  KC F + R
Sbjct: 813  LMNQVFKPYLRRFVLVFFDDILIYSRGMDEHVQHLEVVLGLLQDRELYVNMEKCSFAKPR 872

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 873  ISYLGHFISEQGLEADPEKIRAVSDWPTPSNVREVRGFLGLTGYYRRFVKNYGAIAAPLT 932

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDF+  FEIE+DASG G GAVL Q R 
Sbjct: 933  QLLKKGAFKWDAEAEGAFSKLKKAMMTLPVLAMPDFNLPFEIESDASGVGVGAVLTQCRK 992

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + +YEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LK+LLEQ+V+
Sbjct: 993  PVAYFSKTLSMRDRARPIYERELLAVVLAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVV 1052

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+   V L  +T P ++DV +IK+E  
Sbjct: 1053 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRVSPAVHLNQITAPPMIDVEIIKDETR 1112

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVV-SKSSLLPSILHTYHDSVFGGHS 480
             DP L E I +L  +   + +++LH+ +LK+KGRLV+ SKS+LLP+ILHTYHDSVFGGHS
Sbjct: 1113 LDPALQE-ITRLIQEGMEIPHYTLHQGVLKFKGRLVIPSKSTLLPTILHTYHDSVFGGHS 1172

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+D+ +Y  E                LL+PL IPYAIW D+S
Sbjct: 1173 GFLRTYKRLTGEIYWKGMKKDIMRYCEECAICQRNKSSALSPAGLLMPLEIPYAIWSDIS 1232

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVIFVVV                    VA+ FV EVVRLHGYP+SIV
Sbjct: 1233 MDFIEGLPKSKGWDVIFVVVDRLSKYGHFLLLKHPFSAKMVAETFVKEVVRLHGYPRSIV 1292

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   S+E  L            
Sbjct: 1293 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSIETYLRCFCGEKPNEWS 1352

[Close]

BLAST of Clc06G11005 vs. ExPASy TrEMBL
Match: A0A5D3DM31 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002040 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 8.0e-175
Identity = 400/900 (44.44%), Postives = 482/900 (53.56%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EML+SGIIR + SPYSS VLLV+K+                             
Sbjct: 980  MERLVDEMLTSGIIRPSKSPYSSPVLLVRKRDGSWRFCVDYRALNNVTIPDKFPIPVIEE 1039

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 1040 LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 1099

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ +EEH QHL          ELY N  KC F + R
Sbjct: 1100 LMNQVFKPYLRRFVLVFFDDILVYSRGMEEHFQHLEVVLGLLQAKELYVNMEKCSFAKPR 1159

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 1160 ISYLGHFISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 1219

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDFS  FEIE+DASGFG GAVL Q R 
Sbjct: 1220 QLLKKGAYKWGEEEEAAFGKLKRAMMTLPVLTMPDFSLPFEIESDASGFGVGAVLTQCRK 1279

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + VYEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LKYLLEQ+V+
Sbjct: 1280 PVAYFSKTLSIRDRSRPVYERELIAVVLAVQRWRPYLLGRKFTVKTDQRSLKYLLEQRVV 1339

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+    +L  +T P L+DV ++KEE  
Sbjct: 1340 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRITPTAQLNQITAPALIDVEILKEETR 1399

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVS-KSSLLPSILHTYHDSVFGGHS 480
             DP L EII+ +      + +++L + +LK+KGRLVVS KS+LLP+ILHTYHDSVFGGHS
Sbjct: 1400 QDPALREIIRLIEEQGMEIPHYTLQQGVLKFKGRLVVSNKSTLLPTILHTYHDSVFGGHS 1459

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+DV +Y  E                LL+PL IP AIW D+S
Sbjct: 1460 GFLRTYKRLTGEIYWKGMKRDVMRYCEECAICQRNKSSALTPAGLLMPLEIPDAIWSDIS 1519

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVI VVV                    VA+ F+ EVVRLHGYP+SIV
Sbjct: 1520 MDFIEGLPKSKGWDVILVVVDRLSKYSHFLLLKHPFTAKMVAETFIKEVVRLHGYPRSIV 1579

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   SVE  L            
Sbjct: 1580 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGEKPQEWS 1639

[Close]

BLAST of Clc06G11005 vs. ExPASy TrEMBL
Match: A0A5D3C5N7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00350 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 8.0e-175
Identity = 400/900 (44.44%), Postives = 482/900 (53.56%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EML+SGIIR + SPYSS VLLV+K+                             
Sbjct: 739  MERLVDEMLTSGIIRPSKSPYSSPVLLVRKRDGSWRFCVDYRALNNVTIPDKFPIPVIEE 798

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+M P D+EKTAFRTHEGH EFLVMPFGLTNAPSTFQA
Sbjct: 799  LFDELKGASVFSKIDLKAGYHQIRMCPEDIEKTAFRTHEGHYEFLVMPFGLTNAPSTFQA 858

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKPYLR F+LV   DIL YS+ +EEH QHL          ELY N  KC F + R
Sbjct: 859  LMNQVFKPYLRRFVLVFFDDILVYSRGMEEHFQHLEVVLGLLQAKELYVNMEKCSFAKPR 918

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS + +EADPEK                                         
Sbjct: 919  ISYLGHFISEQGIEADPEKIRAVSEWPTPANVREVRGFLGLTGYYRRFVKNYGTIAAPLT 978

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A  +LK AM+ L VL +PDFS  FEIE+DASGFG GAVL Q R 
Sbjct: 979  QLLKKGAYKWGEEEEAAFGKLKRAMMTLPVLTMPDFSLPFEIESDASGFGVGAVLTQCRK 1038

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS TLS  DR + VYEREL+ VV+AVQ+WRPYLLG+KF V+TDQ++LKYLLEQ+V+
Sbjct: 1039 PVAYFSKTLSIRDRSRPVYERELIAVVLAVQRWRPYLLGRKFTVKTDQRSLKYLLEQRVV 1098

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+    +L  +T P L+DV ++KEE  
Sbjct: 1099 QPQYQKWVAKLLGYSFEVVYQPGLENKAADALSRITPTAQLNQITAPALIDVEILKEETR 1158

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVS-KSSLLPSILHTYHDSVFGGHS 480
             DP L EII+ +      + +++L + +LK+KGRLVVS KS+LLP+ILHTYHDSVFGGHS
Sbjct: 1159 QDPALREIIRLIEEQGMEIPHYTLQQGVLKFKGRLVVSNKSTLLPTILHTYHDSVFGGHS 1218

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKRL GE+YW+GMK+DV +Y  E                LL+PL IP AIW D+S
Sbjct: 1219 GFLRTYKRLTGEIYWKGMKRDVMRYCEECAICQRNKSSALTPAGLLMPLEIPDAIWSDIS 1278

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS+G+DVI VVV                    VA+ F+ EVVRLHGYP+SIV
Sbjct: 1279 MDFIEGLPKSKGWDVILVVVDRLSKYSHFLLLKHPFTAKMVAETFIKEVVRLHGYPRSIV 1338

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDKVF S FW+ELFRLA                   +   SVE  L            
Sbjct: 1339 SDRDKVFLSHFWKELFRLAGTKLNRSSSYHPQSDGQTEVVNKSVETYLRCFCGEKPQEWS 1398

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BLAST of Clc06G11005 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 1.8e-174
Identity = 399/900 (44.33%), Postives = 485/900 (53.89%), Query Frame = 0


Query: 1    MEKLVSEMLSSGIIRTNASPYSSLVLLVKKK----------------------------- 60
            ME+LV EMLSSGIIR + SPYSS VLLV+KK                             
Sbjct: 638  MERLVDEMLSSGIIRPSTSPYSSPVLLVRKKDGSWRFCVDYRALNNVTVPDKFPIPVVEE 697

Query: 61   --------------DREDGDHQIKMHPADVEKTAFRTHEGHNEFLVMPFGLTNAPSTFQA 120
                          D + G HQI+MHP D+EKTAFRTHEGH EF+VMPFGLTNAPSTFQA
Sbjct: 698  LFDELNGADVFSKIDLKAGYHQIRMHPEDIEKTAFRTHEGHYEFMVMPFGLTNAPSTFQA 757

Query: 121  LMNKVFKPYLRNFLLVLSYDILDYSKDLEEHVQHL---------NELYANRTKCQFMRGR 180
            LMN+VFKP+LR F+LV   DIL YSK +EEH QHL         +ELYAN  KC F + R
Sbjct: 758  LMNQVFKPFLRRFVLVFFDDILIYSKGMEEHGQHLEVVLEILRESELYANFDKCHFAKTR 817

Query: 181  IEYLGHLISGKWVEADPEK----------------------------------------- 240
            I YLGH IS K +E DPEK                                         
Sbjct: 818  ISYLGHYISKKGIEVDPEKIRAVKEWPAPANVRELRGFLGLTGYYRRFVQNYGSISAPLT 877

Query: 241  ---------------EASERLKIAMVKLSVLILPDFSEQFEIETDASGFGFGAVLMQKRH 300
                            A E+LK AM+ L VL +PDF+  FEIE+DASGFG GAVL+Q + 
Sbjct: 878  QLLKSGAYKWTEETETAFEKLKKAMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKK 937

Query: 301  PIAYFSHTLSTSDRGKLVYERELMVVVMAVQQWRPYLLGKKFVVRTDQKALKYLLEQKVI 360
            P+AYFS  LST DR + VYERELM VV AVQ+WRPYLLG+KF V+TDQ++LK+LLEQ+VI
Sbjct: 938  PVAYFSKVLSTRDRARPVYERELMAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVI 997

Query: 361  QPQHQRVENKLL----------------MRYLSRMPEGVELANLTVPTLLDVVVIKEEVC 420
            QPQ+Q+   KLL                   LSR+     L  LT P LLDV VI++EV 
Sbjct: 998  QPQYQQWIAKLLGYSFEVLYKPGLENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVR 1057

Query: 421  WDPKLMEIIQKLWVDEDNVSNFSLHRVMLKYKGRLVVSK-SSLLPSILHTYHDSVFGGHS 480
             DP L EI+  +      + +++ H+ +LK+KGRLV+SK S+L+P+I+HTYHDSVFGGHS
Sbjct: 1058 KDPALREILSMIEEQGIEIPHYTCHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHS 1117

Query: 481  GFLRMYKRLIGELYWEGMKQDVKKYVGE----------------LLLPLSIPYAIWEDVS 540
            GFLR YKR+ GELYW+GMK+DV+KY  E                LLLPL IP AIW D+S
Sbjct: 1118 GFLRTYKRMAGELYWKGMKKDVQKYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDIS 1177

Query: 541  MDFIEGLPKSQGYDVIFVVV--------------------VADVFVNEVVRLHGYPKSIV 600
            MDFIEGLPKS G++VI VVV                    VA+VFV EVVRLHG+PKSIV
Sbjct: 1178 MDFIEGLPKSYGWEVILVVVDRLSKYAHFLTLKHPYTAKTVAEVFVKEVVRLHGFPKSIV 1237

Query: 601  SDRDKVFSSQFWQELFRLA------------------LICVVSVENVL------------ 636
            SDRDK+F S FW E+F+LA                   +   SVE  L            
Sbjct: 1238 SDRDKIFISHFWSEMFKLAGTKLNRSSSYHPQTDGQTEVVNKSVEAYLRCFCGEKPRDWS 1297

The following BLAST results are available for this feature:

BLAST of Clc06G11005 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050511.1	1.3e-174	44.44	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0058186.1	1.3e-174	44.56	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK24654.1	1.6e-174	44.44	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK06572.1	1.6e-174	44.44	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23090.1	3.7e-174	44.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc06G11005 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.8e-35	28.77	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.2e-34	27.98	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P0CT41	5.9e-34	23.07	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	5.9e-34	23.07	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	5.9e-34	23.07	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Clc06G11005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAE4	6.1e-175	44.44	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UVI2	6.1e-175	44.56	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DM31	8.0e-175	44.44	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3C5N7	8.0e-175	44.44	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DI73	1.8e-174	44.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Clc06G11005 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 336..381 e-value: 2.6E-10 score: 40.2
None	No IPR available	GENE3D	3.10.20.370		coord: 167..238 e-value: 2.7E-8 score: 35.7
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 38..70 e-value: 5.4E-27 score: 96.5
None	No IPR available	GENE3D	1.10.340.70		coord: 306..383 e-value: 4.8E-10 score: 41.5
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..34 e-value: 1.8E-5 score: 26.5
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 36..92 coord: 2..32
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 148..419 coord: 36..92
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 148..419
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..32
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 173..258 e-value: 3.5137E-33 score: 122.601
None	No IPR available	CDD	cd01647	RT_LTR	coord: 12..136 e-value: 2.21925E-41 score: 148.127
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 386..463 e-value: 9.6E-9 score: 36.8
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 35..136 e-value: 5.4E-27 score: 96.5
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 167..263 e-value: 1.9E-25 score: 89.2
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 38..134 e-value: 4.5E-7 score: 29.6
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 388..456
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..261

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G11005.1	Clc06G11005.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding