Clc06G10930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	ClcChr06: 18930093 .. 18930553 (+)
RNA-Seq Expression	Clc06G10930
Synteny	Clc06G10930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATCACCTTCCTTGAGGATAAACCCTTCTTTCCCGTTAGTCCTCGTCAGGGAGAGAGTAGTAGTGAAGAGACTAACTGTTCATCACCTTCAACCCCCATTGATCTCCTTCCTACACCCGTCCTAAGTACCCAAGACACTGTTCTACCCACCAGACAAGTCCCTTGGATAACTTATTACAGGAAGAATCTCAGAAAGGAAATGGTGTTCCCTACTGATTCGCCGACTCTGGTCCCAGCATCTGAACCAACACAGACTCAAGGTACTGTGACCTTGATAATACTATTTTTTGTGTTGAAAATGATATTATTGAGTCGACAAGACAGCTGACTGAGAATGACAGGGATGATATGACAAAAGACTACAGGGTTGCTAGGATTGATTACGTGTCAACAGGAGCACAGGAGAGTGAGATCATGTCTCAGAAACCTACTACTGAGGAGGAGTCCACAAACTAG

mRNA sequence

ATGGACATCACCTTCCTTGAGGATAAACCCTTCTTTCCCGTTAGTCCTCGTCAGGGAGAGAGTAGTAGTGAAGAGACTAACTGTTCATCACCTTCAACCCCCATTGATCTCCTTCCTACACCCGTCCTAAGTACCCAAGACACTGTTCTACCCACCAGACAAGTCCCTTGGATAACTTATTACAGGAAGAATCTCAGAAAGGAAATGGTGTTCCCTACTGATTCGCCGACTCTGGTCCCAGCATCTGAACCAACACAGACTCAAGGAGCACAGGAGAGTGAGATCATGTCTCAGAAACCTACTACTGAGGAGGAGTCCACAAACTAG

Coding sequence (CDS)

ATGGACATCACCTTCCTTGAGGATAAACCCTTCTTTCCCGTTAGTCCTCGTCAGGGAGAGAGTAGTAGTGAAGAGACTAACTGTTCATCACCTTCAACCCCCATTGATCTCCTTCCTACACCCGTCCTAAGTACCCAAGACACTGTTCTACCCACCAGACAAGTCCCTTGGATAACTTATTACAGGAAGAATCTCAGAAAGGAAATGGTGTTCCCTACTGATTCGCCGACTCTGGTCCCAGCATCTGAACCAACACAGACTCAAGGAGCACAGGAGAGTGAGATCATGTCTCAGAAACCTACTACTGAGGAGGAGTCCACAAACTAG

Protein sequence

MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQESEIMSQKPTTEEESTN

Homology

[Close]

BLAST of Clc06G10930 vs. NCBI nr
Match: TYK08937.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITY 60
          MD+TFLED+ FF  S  QG+S+SEETN S+ S P DL   P+LS  DTVLPT QVPWITY
Sbjct: 3  MDVTFLEDQHFFLASHLQGDSTSEETNWSTSSVPNDL--KPILSAHDTVLPTEQVPWITY 62

Query: 61 YRKNLRKEMVFPTDSPTLVPASE 84
          Y+KNL+ EMV PT  P +V   E
Sbjct: 63 YKKNLKMEMVSPTALPIVVHGYE 83

[Close]

BLAST of Clc06G10930 vs. NCBI nr
Match: KAA0052840.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 8.6e-16
Identity = 53/84 (63.10%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 9   KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKE 68
           KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKE
Sbjct: 57  KPFFPVIHLQGEGGSEEANWLIPFIPISSTAPSELILHDTVLPTNQVPWITYYRKNLRKE 116

Query: 69  MVFPTDSPTLVPASEPTQTQGAQE 93
           MV PTD   LV  SEPTQ QG  E
Sbjct: 117 MVPPTDPLALVHESEPTQAQGTIE 140

[Close]

BLAST of Clc06G10930 vs. NCBI nr
Match: TYK18833.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 8.6e-16
Identity = 53/84 (63.10%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 9   KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKE 68
           KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKE
Sbjct: 257 KPFFPVIHLQGEGGSEEANWLIPFIPISSTAPSELILHDTVLPTNQVPWITYYRKNLRKE 316

Query: 69  MVFPTDSPTLVPASEPTQTQGAQE 93
           MV PTD   LV  SEPTQ QG  E
Sbjct: 317 MVPPTDPLALVHESEPTQAQGTIE 340

[Close]

BLAST of Clc06G10930 vs. NCBI nr
Match: XP_038884509.1 (uncharacterized protein LOC120075312 [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 1   MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITY 60
           MD TF EDK FFPVSP QG+++SEE N S+ S P+DL P P+L T D+VL T+QV WITY
Sbjct: 106 MDSTFQEDKQFFPVSPLQGKTTSEEANASAYSVPLDLFPEPILETNDSVL-TKQVFWITY 165

Query: 61  YRKNLRKEMVFPTDSPTLVPAS--EPTQTQGAQESEIMSQKPTTEEESTN 109
           YRKNLRKE+V P  +P++ P    + ++ + AQ + I+      E +  N
Sbjct: 166 YRKNLRKEIV-PKIAPSVAPPEGVQESKPEPAQGTSILDDNEYVEGDVVN 213

[Close]

BLAST of Clc06G10930 vs. NCBI nr
Match: KAA0060782.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 1   MDITFLEDKPFFPVSPRQGESSSEETN----CSSPSTPIDLLPTPVLSTQDTVLPTRQVP 60
           MD+TFLED+PFFPVS  QGES SEE+N     S  ST   L+  P   +  TVLPT QVP
Sbjct: 106 MDVTFLEDRPFFPVSHLQGESESEESNSNWVISLESTSPTLVTIPSPDSHYTVLPTNQVP 165

Query: 61  WITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQES 94
           W TYYR+NLRKE+  P + P  V  SEP + QG  +S
Sbjct: 166 WKTYYRRNLRKEVGSPANQPAPVQDSEPLRDQGMTDS 202

[Close]

BLAST of Clc06G10930 vs. ExPASy TrEMBL
Match: A0A5D3CAA9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00250 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.4e-17
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MDITFLEDKPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITY 60
          MD+TFLED+ FF  S  QG+S+SEETN S+ S P DL   P+LS  DTVLPT QVPWITY
Sbjct: 3  MDVTFLEDQHFFLASHLQGDSTSEETNWSTSSVPNDL--KPILSAHDTVLPTEQVPWITY 62

Query: 61 YRKNLRKEMVFPTDSPTLVPASE 84
          Y+KNL+ EMV PT  P +V   E
Sbjct: 63 YKKNLKMEMVSPTALPIVVHGYE 83

[Close]

BLAST of Clc06G10930 vs. ExPASy TrEMBL
Match: A0A5A7UCE7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold773G00400 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 53/84 (63.10%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 9   KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKE 68
           KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKE
Sbjct: 57  KPFFPVIHLQGEGGSEEANWLIPFIPISSTAPSELILHDTVLPTNQVPWITYYRKNLRKE 116

Query: 69  MVFPTDSPTLVPASEPTQTQGAQE 93
           MV PTD   LV  SEPTQ QG  E
Sbjct: 117 MVPPTDPLALVHESEPTQAQGTIE 140

[Close]

BLAST of Clc06G10930 vs. ExPASy TrEMBL
Match: A0A5D3D5K0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00240 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.2e-16
Identity = 53/84 (63.10%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 9   KPFFPVSPRQGESSSEETNCSSPSTPIDLLPTPVLSTQDTVLPTRQVPWITYYRKNLRKE 68
           KPFFPV   QGE  SEE N   P  PI       L   DTVLPT QVPWITYYRKNLRKE
Sbjct: 257 KPFFPVIHLQGEGGSEEANWLIPFIPISSTAPSELILHDTVLPTNQVPWITYYRKNLRKE 316

Query: 69  MVFPTDSPTLVPASEPTQTQGAQE 93
           MV PTD   LV  SEPTQ QG  E
Sbjct: 317 MVPPTDPLALVHESEPTQAQGTIE 340

[Close]

BLAST of Clc06G10930 vs. ExPASy TrEMBL
Match: A0A5A7UY25 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00040 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.1e-16
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 1   MDITFLEDKPFFPVSPRQGESSSEETN----CSSPSTPIDLLPTPVLSTQDTVLPTRQVP 60
           MD+TFLED+PFFPVS  QGES SEE+N     S  ST   L+  P   +  TVLPT QVP
Sbjct: 106 MDVTFLEDRPFFPVSHLQGESESEESNSNWVISLESTSPTLVTIPSPDSHYTVLPTNQVP 165

Query: 61  WITYYRKNLRKEMVFPTDSPTLVPASEPTQTQGAQES 94
           W TYYR+NLRKE+  P + P  V  SEP + QG  +S
Sbjct: 166 WKTYYRRNLRKEVGSPANQPAPVQDSEPLRDQGMTDS 202

[Close]

BLAST of Clc06G10930 vs. ExPASy TrEMBL
Match: A0A5D3BBC2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00980 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.6e-13
Identity = 47/98 (47.96%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1   MDITFLEDKPFFPVSPRQGESSSEETNCS------SPSTPIDLLPTPVLSTQDTVLPTRQ 60
           MD+TF ED+P+FPVS  QGES+ EE+N +      +PST  D+ P P+      +LPT Q
Sbjct: 441 MDVTFCEDRPYFPVSHLQGESAIEESNSTFEFIEPTPSTVSDIDPHPI------ILPTNQ 500

Query: 61  VPWITYYRKNLRKEMVFPTDSPTL-VPASEPTQTQGAQ 92
           VPW TY+R+NLRKE+ +PT+ P   V   EP + QG +
Sbjct: 501 VPWKTYFRRNLRKEVGYPTNQPPAPVQDFEPPRDQGME 532

The following BLAST results are available for this feature:

BLAST of Clc06G10930 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK08937.1	1.7e-16	61.45	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0052840.1	8.6e-16	63.10	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK18833.1	8.6e-16	63.10	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
XP_038884509.1	1.5e-15	50.00	uncharacterized protein LOC120075312 [Benincasa hispida]	[more]
KAA0060782.1	1.5e-15	54.64	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Clc06G10930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G10930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CAA9	8.4e-17	61.45	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31...	[more]
A0A5A7UCE7	4.2e-16	63.10	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold77...	[more]
A0A5D3D5K0	4.2e-16	63.10	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G0...	[more]
A0A5A7UY25	7.1e-16	54.64	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44...	[more]
A0A5D3BBC2	5.6e-13	47.96	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209...	[more]

BLAST of Clc06G10930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10930.1	Clc06G10930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups