Clc06G10920 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10920
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Beta-galactosidase
Location	ClcChr06: 18927690 .. 18929007 (+)
RNA-Seq Expression	Clc06G10920
Synteny	Clc06G10920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAACAGCAGTTGGCGAACCTTCAGGTGAGTTTTCAACAACAAATCGTTGCCCTTGGCGCCTCCACCACCCTCAATCAAAATGTAGTGAGTTCGGGTGTCCAGTTTGAATTACCGATGTATCCTGAGAATCCGGTAACTGCGTTTCCAACCTCAACTCTTGCACTTTATTTGTCTGAACCTATGGGAAACTCCACAAGACTAAATATTGGTGAGAAATTGAATGGCTAGAATTATTTCTCTTGGTCTCAATTTGTTAAAATGGTGCTTGAGGGGCATCACAAGTTTGGATATCTAACTGGTGAGATACCGAAACCCAGACTAGGGGATCCTCAGGAGCGTATTTGGAAAGGGGAGGACTCCTTACTTTGTTCTTTGTTGATTCATAGTATGGAACCTCAAATTGGAAAAACCCTGTTGTATGCTGCCTCTGCTCGGGATATCTGGGATGTAGTTCAGAAGTTATATTCCAAGAGACAAAATGCATCACAACTTTACACCTTACGAAAACAGATTCACGAATGCAAGTAGGGAACTATGGATGTCACATCATATTTTAACAAATTATCTCTTATTTGGCAAGAAATGGATCTGTGTCGAGAACTTATCTGAGACTGTCCTTGTGGAGGAGTTCAATATTATAAAATTGAGGAAATTGACCGTGTGTATGATCTTTTAGCAGGTCTAAACTCCAAGTTTGATGGCATTCAAGGTAGGATGCTGGGACAGAGACCAATACCAACCCTTATGGAAGTCTGTTTCGAGGTTCGTCTTGAGGAAAATAGATCCAGTGCTATGAACATCATAGTTACTCTTGTGACTGACTCTGTTGCCTTTAGTGTTAAATCATCTGGTTCTATTGGAGACAAACAAAACGGGATACTGCCTCCAATGTGTGAGCACTGTTAGAAACCCTGACATACAAAGGATCAGTGCTGGAAGTTACATGGTCGACCACCAAATGGCAAATGACGTCCTCCGAACGACAAGCCTAATTCTATTCAGGTTCAAGTGAGTGAAACTGCTAGTGGCTCCCGCCACAACCTTCGATGAACTGCCCAGGTGACCTAGTGCCTCCTCTCTTGGGGCTATTGCCCAATTAGGTACATCTCAAACCTTGAGTTTCCTTAGTGTTATTGGCAAGAGGCCTTGGATCCTTGATTCAGGAGCTACAGATCATCTGACTAGATCCTTTAATAATTTCTTCTCATATCATTCGTGTGCTGGTAATGAAAAAATTCGGATTGCTGATGGATCCTTTGCTCCAGTTGCAAGCAAGGGTCACATTTCTCCTTTTGATGGTTCAATATTATAG

mRNA sequence

ATGATTCAACAGCAGTTGGCGAACCTTCAGGTGAGTTTTCAACAACAAATCGTTGCCCTTGGCGCCTCCACCACCCTCAATCAAAATGTAGTGAGTTCGGGTGTCCAGTTTGAATTACCGATGTATCCTGAGAATCCGAATTATTTCTCTTGGTCTCAATTTGTTAAAATGGTGCTTGAGGGGCATCACAAGTTTGGATATCTAACTGGTGAGATACCGAAACCCAGACTAGGGGATCCTCAGGAGCGTATTTGGAAAGGGGAGGACTCCTTACTTTGTTCTTTGTTGATTCATAGTATGGAACCTCAAATTGGAAAAACCCTGTTGTATGCTGCCTCTGCTCGGGATATCTGGGATGTAGTTCAGAAGTTATATTCCAAGAGACAAAATGCATCACAACTTTACACCTTACGAAAACAGATTCACGAATGCAAGATGCTGGGACAGAGACCAATACCAACCCTTATGGAAGTCTGTTTCGAGGTTCGTCTTGAGGAAAATAGATCCAGTGCTATGAACATCATAGTTACTCTTGTGACTGACTCTGTTGCCTTTAGTGTTAAATCATCTGGTTCTATTGGAGACAAACAAAACGGGATACTGCCTCCAATTGCCTCCTCTCTTGGGGCTATTGCCCAATTAGGTACATCTCAAACCTTGAGTTTCCTTAGTGTTATTGGCAAGAGGCCTTGGATCCTTGATTCAGGAGCTACAGATCATCTGACTAGATCCTTTAATAATTTCTTCTCATATCATTCGTGTGCTGGTAATGAAAAAATTCGGATTGCTGATGGATCCTTTGCTCCAGTTGCAAGCAAGGGTCACATTTCTCCTTTTGATGGTTCAATATTATAG

Coding sequence (CDS)

ATGATTCAACAGCAGTTGGCGAACCTTCAGGTGAGTTTTCAACAACAAATCGTTGCCCTTGGCGCCTCCACCACCCTCAATCAAAATGTAGTGAGTTCGGGTGTCCAGTTTGAATTACCGATGTATCCTGAGAATCCGAATTATTTCTCTTGGTCTCAATTTGTTAAAATGGTGCTTGAGGGGCATCACAAGTTTGGATATCTAACTGGTGAGATACCGAAACCCAGACTAGGGGATCCTCAGGAGCGTATTTGGAAAGGGGAGGACTCCTTACTTTGTTCTTTGTTGATTCATAGTATGGAACCTCAAATTGGAAAAACCCTGTTGTATGCTGCCTCTGCTCGGGATATCTGGGATGTAGTTCAGAAGTTATATTCCAAGAGACAAAATGCATCACAACTTTACACCTTACGAAAACAGATTCACGAATGCAAGATGCTGGGACAGAGACCAATACCAACCCTTATGGAAGTCTGTTTCGAGGTTCGTCTTGAGGAAAATAGATCCAGTGCTATGAACATCATAGTTACTCTTGTGACTGACTCTGTTGCCTTTAGTGTTAAATCATCTGGTTCTATTGGAGACAAACAAAACGGGATACTGCCTCCAATTGCCTCCTCTCTTGGGGCTATTGCCCAATTAGGTACATCTCAAACCTTGAGTTTCCTTAGTGTTATTGGCAAGAGGCCTTGGATCCTTGATTCAGGAGCTACAGATCATCTGACTAGATCCTTTAATAATTTCTTCTCATATCATTCGTGTGCTGGTAATGAAAAAATTCGGATTGCTGATGGATCCTTTGCTCCAGTTGCAAGCAAGGGTCACATTTCTCCTTTTGATGGTTCAATATTATAG

Protein sequence

MIQQQLANLQVSFQQQIVALGASTTLNQNVVSSGVQFELPMYPENPNYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGKTLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECKMLGQRPIPTLMEVCFEVRLEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIASSLGAIAQLGTSQTLSFLSVIGKRPWILDSGATDHLTRSFNNFFSYHSCAGNEKIRIADGSFAPVASKGHISPFDGSIL

Homology

[Close]

BLAST of Clc06G10920 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 176 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 235

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 236 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 295

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 296 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 355

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 356 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 415

[Close]

BLAST of Clc06G10920 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 176 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 235

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 236 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 295

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 296 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 355

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 356 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 415

[Close]

BLAST of Clc06G10920 vs. NCBI nr
Match: KAA0034386.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 233 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 292

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 293 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 352

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 353 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 412

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 413 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 472

[Close]

BLAST of Clc06G10920 vs. NCBI nr
Match: TYJ97256.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 176 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 235

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 236 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 295

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 296 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 355

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 356 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 415

[Close]

BLAST of Clc06G10920 vs. NCBI nr
Match: TYJ95886.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 6.1e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 176 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 235

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 236 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 295

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 296 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 355

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 356 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 415

[Close]

BLAST of Clc06G10920 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-04
Identity = 20/47 (42.55%), Postives = 28/47 (59.57%), Query Frame = 0


Query: 231 WILDSGATDHLTRSFNNFFSYHSCAGNEKIRIADGSFAPVASKGHIS 278
           W+LDSGAT H+T  FNN   +    G + + +ADGS  P++  G  S
Sbjct: 331 WLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTS 377

[Close]

BLAST of Clc06G10920 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.4e-04
Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = 0


Query: 231 WILDSGATDHLTRSFNNFFSYHSCAGNEKIRIADGSFAPVASKGHIS 278
           W+LDSGAT H+T  FNN   +    G + + IADGS  P+   G  S
Sbjct: 310 WLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSAS 356

[Close]

BLAST of Clc06G10920 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 176 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 235

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 236 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 295

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 296 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 355

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 356 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 415

[Close]

BLAST of Clc06G10920 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 176 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 235

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 236 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 295

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 296 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 355

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 356 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 415

[Close]

BLAST of Clc06G10920 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 176 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 235

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 236 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 295

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 296 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 355

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 356 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 415

[Close]

BLAST of Clc06G10920 vs. ExPASy TrEMBL
Match: A0A5A7V0Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00520 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 451 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 510

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 511 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 570

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 571 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 630

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 631 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 690

[Close]

BLAST of Clc06G10920 vs. ExPASy TrEMBL
Match: A0A5A7UGB2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00290 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.9e-69
Identity = 158/361 (43.77%), Postives = 187/361 (51.80%), Query Frame = 0


Query: 47  NYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQIGK 106
           NYFSWSQ +KM LEG ++FG+LTGEI +P  GD  ER+WKGEDSL+ S+LI+SMEPQIGK
Sbjct: 205 NYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIRSMLINSMEPQIGK 264

Query: 107 TLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQIHECK--------------------- 166
            LLYA +A+D+WD  Q LYSKRQNAS+LYTLRKQ+H CK                     
Sbjct: 265 PLLYATTAKDLWDTTQTLYSKRQNASRLYTLRKQVHNCKQGTLDVTTYFNKLSLLWQEMD 324

Query: 167 ------------------------------------------MLGQRPIPTLMEVCFEVR 226
                                                     +LGQRP+P+LMEVCFEVR
Sbjct: 325 LCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVR 384

Query: 227 LEENRSSAMNIIVTLVTDSVAFSVKSSGSIGDKQNGILPPIAS----------------- 285
           LEE+R++AM ++ T   DS AFS +SS    DK NG   P+                   
Sbjct: 385 LEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKDQCWKLHG 444

[Close]

BLAST of Clc06G10920 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 3.5e-06
Identity = 23/98 (23.47%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 44  ENPNYFSWSQFVKMVLEGHHKFGYLTGEIPKPRLGDPQERIWKGEDSLLCSLLIHSMEPQ 103
           +  NY +W    +  L    KFG++ G +PKP    P  + W+  ++++   L++SM  +
Sbjct: 38  DEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDK 97

Query: 104 IGKTLLYAASARDIWDVVQKLYSKRQNASQLYTLRKQI 142
           + ++++YA +A  +W+ +++++    +  ++Y LR+++
Sbjct: 98  LLESVMYAETAHKMWEDLRRVFVPCVDL-KIYQLRRRL 134

The following BLAST results are available for this feature:

BLAST of Clc06G10920 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99952.1	6.1e-69	43.77	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
TYK08054.1	6.1e-69	43.77	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0034386.1	6.1e-69	43.77	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYJ97256.1	6.1e-69	43.77	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYJ95886.1	6.1e-69	43.77	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of Clc06G10920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.4e-04	42.55	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.4e-04	44.68	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of Clc06G10920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJK7	2.9e-69	43.77	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	2.9e-69	43.77	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7SM64	2.9e-69	43.77	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5A7V0Y9	2.9e-69	43.77	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00...	[more]
A0A5A7UGB2	2.9e-69	43.77	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055...	[more]

BLAST of Clc06G10920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	3.5e-06	23.47	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 85..149 e-value: 1.9E-6 score: 27.7
None	No IPR available	PANTHER	PTHR37610:SF41	SUBFAMILY NOT NAMED	coord: 41..144
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 41..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10920.1	Clc06G10920.1	mRNA