Clc06G10780 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10780
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotrans_gag domain-containing protein
Location	ClcChr06: 18498465 .. 18498824 (-)
RNA-Seq Expression	Clc06G10780
Synteny	Clc06G10780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGGAGATACCAAAGGCAATTCAAGACTACTTCCAATCGACATTACCGACAAATCAACCCGACATCATGAATGTACCCATCAATATCAACAACATTGAGTTGAAACCAGGGTTGATCCAAATGGCTAGAGAGCTAGCTTTTAGAGACAAAACTAATAAAGATCCTCAAAAGCACTTACGGTTCTTCTTAGAAATATTTGGAACGGTAAAGATGAATGGTGTCTCTAACGATGCAATTAAACTAAGACTTTTTCCTTTCTCTTTACAGGATCAAGAAAGGGACAAAGGATTGGTTGTAAACCATACCTCCGGTGTCACACCCCCTCCCAGTTTACCCTCACTACTCGGGGAGTGA

mRNA sequence

ATGGCAGAGGAGATACCAAAGGCAATTCAAGACTACTTCCAATCGACATTACCGACAAATCAACCCGACATCATGAATGTACCCATCAATATCAACAACATTGAGTTGAAACCAGGGTTGATCCAAATGGCTAGAGAGCTAGCTTTTAGAGACAAAACTAATAAAGATCCTCAAAAGCACTTACGGTTCTTCTTAGAAATATTTGGAACGGTAAAGATGAATGGTGTCTCTAACGATGCAATTAAACTAAGACTTTTTCCTTTCTCTTTACAGGATCAAGAAAGGGACAAAGGATTGGTTGTAAACCATACCTCCGGTGTCACACCCCCTCCCAGTTTACCCTCACTACTCGGGGAGTGA

Coding sequence (CDS)

ATGGCAGAGGAGATACCAAAGGCAATTCAAGACTACTTCCAATCGACATTACCGACAAATCAACCCGACATCATGAATGTACCCATCAATATCAACAACATTGAGTTGAAACCAGGGTTGATCCAAATGGCTAGAGAGCTAGCTTTTAGAGACAAAACTAATAAAGATCCTCAAAAGCACTTACGGTTCTTCTTAGAAATATTTGGAACGGTAAAGATGAATGGTGTCTCTAACGATGCAATTAAACTAAGACTTTTTCCTTTCTCTTTACAGGATCAAGAAAGGGACAAAGGATTGGTTGTAAACCATACCTCCGGTGTCACACCCCCTCCCAGTTTACCCTCACTACTCGGGGAGTGA

Protein sequence

MAEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVNHTSGVTPPPSLPSLLGE

Homology

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BLAST of Clc06G10780 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 80/96 (83.33%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1   MAEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKH 60
           MAEEIPKAI+DYFQ TLP +QP IMNVPIN+NN ELKPGLIQMARELAFR +TN+DP KH
Sbjct: 49  MAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFRGRTNEDPHKH 108

Query: 61  LRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERD 97
           LR FLEI GTVKMNGVSNDAIKLRLFPFSLQD+ +D
Sbjct: 109 LRSFLEICGTVKMNGVSNDAIKLRLFPFSLQDRAKD 144

[Close]

BLAST of Clc06G10780 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-20
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 9   IQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIF 68
           I+DY Q   P N   I+N+PIN NN ELKPGLIQM RE  FR    +DP  HL  FL++ 
Sbjct: 27  IRDYCQPNFP-NHVGIINLPINANNSELKPGLIQMVRENTFRGNATEDPNNHLTIFLDVC 86

Query: 69  GTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVN 103
           GTVKMNGV +DAI+LRLFP SLQD+E  +  + N
Sbjct: 87  GTVKMNGVIDDAIRLRLFPLSLQDKEMVQAFLTN 119

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BLAST of Clc06G10780 vs. NCBI nr
Match: KAG7947748.1 (hypothetical protein I3843_14G109500 [Carya illinoinensis])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKD 60
          MAEE    +P+ ++DY +  +  N   IM  PIN NN ELKP LI M ++  F      D
Sbjct: 1  MAEEDREVLPRTLKDYVRPVVNGNYSSIMRQPINANNFELKPALISMVQQAQFSGSPLDD 60

Query: 61 PQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER 96
          P  HL  FLEI  TVK+NGV+ D I+LRLFPFSL+D+ R
Sbjct: 61 PNVHLAMFLEICDTVKINGVTEDTIRLRLFPFSLRDKAR 99

[Close]

BLAST of Clc06G10780 vs. NCBI nr
Match: KAG6734747.1 (hypothetical protein I3842_01G285500 [Carya illinoinensis])

HSP 1 Score: 96.3 bits (238), Expect = 1.9e-16
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1  MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKD 60
          MAEE    +P+ ++DY +  +  N   IM  PIN NN ELKP LI M ++  F      D
Sbjct: 1  MAEEDREVLPRTLKDYVRPVVNGNYSSIMRQPINANNFELKPALISMVQQAQFSGSPLDD 60

Query: 61 PQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER 96
          P  HL  FLEI  TVK+NGV+ D I+LRLFPFSL+D+ R
Sbjct: 61 PNVHLAMFLEICDTVKINGVTEDTIRLRLFPFSLRDKAR 99

[Close]

BLAST of Clc06G10780 vs. NCBI nr
Match: KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-16
Identity = 49/99 (49.49%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 1   MAEE----IPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKD 60
           MAEE    +P+ ++DY +  +  N   IM  PIN NN ELKP LI M ++  F      D
Sbjct: 31  MAEEDREVLPRTLKDYVRPVVNGNYSSIMRQPINANNFELKPALISMVQQAQFSGSPLDD 90

Query: 61  PQKHLRFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER 96
           P  HL  FLEI  TVK+NGV+ D I+LRLFPFSL+D+ R
Sbjct: 91  PNIHLAMFLEICDTVKINGVTEDTIRLRLFPFSLRDKAR 129

[Close]

BLAST of Clc06G10780 vs. ExPASy TrEMBL
Match: A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.1e-20
Identity = 54/94 (57.45%), Postives = 65/94 (69.15%), Query Frame = 0


Query: 9   IQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLEIF 68
           I+DY Q   P N   I+N+PIN NN ELKPGLIQM RE  FR    +DP  HL  FL++ 
Sbjct: 27  IRDYCQPNFP-NHVGIINLPINANNSELKPGLIQMVRENTFRGNATEDPNNHLTIFLDVC 86

Query: 69  GTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVVN 103
           GTVKMNGV +DAI+LRLFP SLQD+E  +  + N
Sbjct: 87  GTVKMNGVIDDAIRLRLFPLSLQDKEMVQAFLTN 119

[Close]

BLAST of Clc06G10780 vs. ExPASy TrEMBL
Match: A0A803PJA6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 2   AEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHL 61
           A+  P+A++DY    +  N   I N  I  NN ELKP LI M ++  F     KDP  HL
Sbjct: 55  ADAQPRAVRDYCLPVVNKNLTGIANPVIAANNFELKPALINMVQQNHFGGLATKDPNIHL 114

Query: 62  RFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQER 96
             FLE+  T+KMNG+ +DAIKLRLFPFSL+D+ +
Sbjct: 115 AIFLEVCATMKMNGLIDDAIKLRLFPFSLRDKAK 148

[Close]

BLAST of Clc06G10780 vs. ExPASy TrEMBL
Match: A0A2I4E1Q5 (uncharacterized protein LOC108985472 OS=Juglans regia OX=51240 GN=LOC108985472 PE=4 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 44/91 (48.35%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 6   PKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFL 65
           P+ ++DY +  +  N   I    IN NN ELKP LI M ++  F      DP  HL  FL
Sbjct: 10  PRTLKDYVRPVVNDNYSGIRRQTINANNFELKPALISMVQQAHFCGSPLDDPNIHLAMFL 69

Query: 66  EIFGTVKMNGVSNDAIKLRLFPFSLQDQERD 97
           EI  TVK+NGV+ D I+LRLFPFSL+D+ RD
Sbjct: 70  EICDTVKINGVTGDTIRLRLFPFSLRDKARD 100

[Close]

BLAST of Clc06G10780 vs. ExPASy TrEMBL
Match: A0A803P9R1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.6e-14
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 2   AEEIPKAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHL 61
           A+  P+AI+DY    +  N  DI N  I  NN ELK  LI + +   F     +DP  HL
Sbjct: 62  ADAQPQAIRDYCLLVVNENLTDIANPVIAANNFELKHALINLVKHNQFGGLATEDPNIHL 121

Query: 62  RFFLEIFGTVKMNGVSNDAIKLRLFPFSLQDQERDKGLVV 102
             FLE+  TVKMN V++DAI+L LFPFSL+D+ R  G ++
Sbjct: 122 PIFLEVCATVKMNDVTDDAIRLGLFPFSLRDRARGGGRII 161

[Close]

BLAST of Clc06G10780 vs. ExPASy TrEMBL
Match: A0A6P6XAQ1 (Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.6e-13
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 7  KAIQDYFQSTLPTNQPDIMNVPININNIELKPGLIQMARELAFRDKTNKDPQKHLRFFLE 66
          + ++D+       +Q  I+   +N NN E+KP LIQM ++  +     +DP  HL  FLE
Sbjct: 9  RILRDFALPGAQGSQTSIVRPTVNANNFEIKPSLIQMVQQSQYGGNATEDPNSHLSTFLE 68

Query: 67 IFGTVKMNGVSNDAIKLRLFPFSLQDQER 96
          I  T+K NGVS DAIKLRLFPFSL+D+ +
Sbjct: 69 ICDTIKFNGVSEDAIKLRLFPFSLRDKAK 97

The following BLAST results are available for this feature:

BLAST of Clc06G10780 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833153.1	1.5e-37	83.33	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
XP_022157708.1	2.2e-20	57.45	uncharacterized protein LOC111024361 [Momordica charantia]	[more]
KAG7947748.1	1.9e-16	49.49	hypothetical protein I3843_14G109500 [Carya illinoinensis]	[more]
KAG6734747.1	1.9e-16	49.49	hypothetical protein I3842_01G285500 [Carya illinoinensis]	[more]
KAG7990634.1	2.5e-16	49.49	hypothetical protein I3843_02G035100 [Carya illinoinensis]	[more]

BLAST of Clc06G10780 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G10780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DU19	1.1e-20	57.45	uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A803PJA6	1.1e-14	47.87	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2I4E1Q5	1.1e-14	48.35	uncharacterized protein LOC108985472 OS=Juglans regia OX=51240 GN=LOC108985472 P...	[more]
A0A803P9R1	9.6e-14	45.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A6P6XAQ1	1.6e-13	44.94	Reverse transcriptase OS=Coffea arabica OX=13443 GN=LOC113740608 PE=4 SV=1	[more]

BLAST of Clc06G10780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10780.1	Clc06G10780.1	mRNA