Clc06G10760 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10760
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed DNA polymerase
Location	ClcChr06: 18490952 .. 18492576 (-)
RNA-Seq Expression	Clc06G10760
Synteny	Clc06G10760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTCTATGCGTCCATGAATAGTTTGGCCGATGTCAACGCGTTGTAGGTTTCTAAAACATAGCTATGCGTTGAGTTATTGTTAACACATTGTCAGGTTGTTTGCGTTCCGTTCAGATCATGCGTACATGAAGAACAGTTTGCTAATGCGTCGTCCTGCGTTAAGAAGCCATCAACGCATCGTCTGGTTTCCTGTGTCAAAACATGCGTTTTAGGCTCAAAAGGTGGTAAAATCATTATCTTCCTAAAAATACTAGAGTATAACGCAAAGGAAGATTTCTCACTAAAAATTGACATCACTTGTCGCATGCTTCTCTATTTAATCTCTATTTATCTAGGAAAAAGGCTATCATAACTTGTATTTCTACAAGTTATCACACCCCCAAACTTAGATAAATGCTTGTCCTCAAGCATAACTTCTATCTAAGAAACTTCAATCATCCTAAACATTTTCTCAACGCATTGACTAGTCTCTCAGAATGCTATACTCAATCAACTACCCATTAGTTATATTATTTCTCTACCTCTATATTCTTTTCTTTAGGACGGGTCTAATTTGTATGCGACAAGCTTTCTTTTCAAAATTCTTTAACTCATTATTCACAAAATTTTTGTTTCTTCTTTTAACACTGAGTCTGAAAAGATGAAGATATAAAGTTACTTTTTCTTTCATTGGTTTTATTATTTATGTGACCATGCATCGAGTAGGGTTACCCACCTTCGTTCTGACATACCAACGATGGGGTGCATGGAGGCAGCCAACTACGAGCAAGTGCCCTTCTTGACTAAACTCTTATCTAAGCTCGGTTTCCTCACTAGACATTGGAGTTGATTATTTTATCTATGCGTCAATGATTACGATTACCCACCTTCGTTTTGACACACCAACTATGGGGTGCATGGAGGCGGCCAACTACGAGCAGGTGTCGTTTTCAGCTAAACTCTTAACAAGATAAATATATTAGTATTGCTAGCGGAGTTTTGCGTTGAACGCAACAACATCGGTAAGCTGTGTGCAATGTGGCGAGGGCCACCTGTACGATATGTGTCCCTACAATCCACAATCTGTCTGCTATGTTCAGAACAACCCATACTCTAAGACCTATAATCCAGGTTGGAGAAAACCACCCTAACTTTGGATGGGGACGAAATCAACCACAGACGCAGGGAACTAGGCAACAACCGCAGAGAAGCAACAACCCTGGTTACAACCAAGGTGTTCAAGAGCATCAATCACAAAGAAACCAGCAAGTGGACGTATCATCCTCATTATCGTCCCTGGAATCTTTCTTACGAGCCTATATGAGTAAAACCGATGCAATGCTCTAGAACCACGATGCAATGTTCTAGAATCAAGCCGCTGCGACTCGAAATCTAGAAGTCCAAATGGGACAAATTGCAAGTGCGCTCAAAATCAGACCTCAAGGAGCATTGCCCAGTGATACCGAAGCCCCACGAGGTAACGGTAAAGAACAATGTCAAGTTGTGACATTGAGGGGTGGGAAGGTTCTTCCCACTGAAACGCAAGACATTAGGGCACAAGGAAATCTACAGCCTCACATCACTTCACAACCAATCCCAAGCACACCAATTAATAATCCGCAACCTGATGCGCACTTTTAG

mRNA sequence

ATGGTCGTCTATGCGTCCATGAATAGTTTGGCCGATGTCAACGCGTTATCATGCGTACATGAAGAACAGTTTGCTAATGCGTCGTCCTGCGTTAAGAAGCCATCAACGCATCGTCTGGTTTCCTGTGTCAAAACATGCGTTTTAGGCTCAAAAGGTGCTGTGTGCAATGTGGCGAGGGCCACCTGTACGATATGTGTCCCTACAATCCACAATCTGTCTGCTATGTTCAGAACAACCCATACTCTAAGACCTATAATCCAGGTTGGAGAAAACCACCCTAACTTTGGATGGGGACGAAATCAACCACAGACGCAGGGAACTAGGCAACAACCGCAGAGAAGCAACAACCCTGGTTACAACCAAGGTGTTCAAGAGCATCAATCACAAAGAAACCAGCAAGTGGACAATCAAGCCGCTGCGACTCGAAATCTAGAAGTCCAAATGGGACAAATTGCAAGTGCGCTCAAAATCAGACCTCAAGGAGCATTGCCCAGTGATACCGAAGCCCCACGAGGTAACGGTAAAGAACAATGTCAAGTTGTGACATTGAGGGGTGGGAAGGTTCTTCCCACTGAAACGCAAGACATTAGGGCACAAGGAAATCTACAGCCTCACATCACTTCACAACCAATCCCAAGCACACCAATTAATAATCCGCAACCTGATGCGCACTTTTAG

Coding sequence (CDS)

ATGGTCGTCTATGCGTCCATGAATAGTTTGGCCGATGTCAACGCGTTATCATGCGTACATGAAGAACAGTTTGCTAATGCGTCGTCCTGCGTTAAGAAGCCATCAACGCATCGTCTGGTTTCCTGTGTCAAAACATGCGTTTTAGGCTCAAAAGGTGCTGTGTGCAATGTGGCGAGGGCCACCTGTACGATATGTGTCCCTACAATCCACAATCTGTCTGCTATGTTCAGAACAACCCATACTCTAAGACCTATAATCCAGGTTGGAGAAAACCACCCTAACTTTGGATGGGGACGAAATCAACCACAGACGCAGGGAACTAGGCAACAACCGCAGAGAAGCAACAACCCTGGTTACAACCAAGGTGTTCAAGAGCATCAATCACAAAGAAACCAGCAAGTGGACAATCAAGCCGCTGCGACTCGAAATCTAGAAGTCCAAATGGGACAAATTGCAAGTGCGCTCAAAATCAGACCTCAAGGAGCATTGCCCAGTGATACCGAAGCCCCACGAGGTAACGGTAAAGAACAATGTCAAGTTGTGACATTGAGGGGTGGGAAGGTTCTTCCCACTGAAACGCAAGACATTAGGGCACAAGGAAATCTACAGCCTCACATCACTTCACAACCAATCCCAAGCACACCAATTAATAATCCGCAACCTGATGCGCACTTTTAG

Protein sequence

MVVYASMNSLADVNALSCVHEEQFANASSCVKKPSTHRLVSCVKTCVLGSKGAVCNVARATCTICVPTIHNLSAMFRTTHTLRPIIQVGENHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQGVQEHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVLPTETQDIRAQGNLQPHITSQPIPSTPINNPQPDAHF

Homology

[Close]

BLAST of Clc06G10760 vs. NCBI nr
Match: XP_030507648.1 (uncharacterized protein LOC115722545 [Cannabis sativa])

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-14
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 90  ENHPNFGWGRNQPQTQGTRQ-QPQRSNNPGYNQGVQEHQSQRNQQ--------------- 149
           ++HPNF WG     + G +Q Q ++S  PG++Q  + HQ Q +Q                
Sbjct: 274 KHHPNFSWGGQGASSSGAQQAQGKQSFPPGFSQQPRSHQPQGSQTSSLESLMRDYMAKND 333

Query: 150 --VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVL 190
             + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE PR +GKE C+ +TLR GK+L
Sbjct: 334 AVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDTENPRRDGKEHCKAITLRSGKIL 391

[Close]

BLAST of Clc06G10760 vs. NCBI nr
Match: XP_030503898.1 (uncharacterized protein LOC115719117 [Cannabis sativa])

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-14
Identity = 56/135 (41.48%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 90  ENHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQ---GVQEHQSQRNQQ------------- 149
           ++HPNF WG     + G + Q ++S  PG++Q     Q HQ Q +Q              
Sbjct: 295 KHHPNFSWGGQGASSSGAQGQGKQSFPPGFSQQPRPQQPHQPQGSQTSSLESLMRDYMAK 354

Query: 150 ----VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVL 205
               + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE PR +GKE C+ VTLR GK++
Sbjct: 355 NDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDTENPRRDGKEHCKAVTLRSGKII 414

[Close]

BLAST of Clc06G10760 vs. NCBI nr
Match: XP_030498047.1 (uncharacterized protein LOC115713707 [Cannabis sativa])

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-14
Identity = 56/135 (41.48%), Postives = 80/135 (59.26%), Query Frame = 0


Query: 90  ENHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQ---GVQEHQSQRNQQ------------- 149
           ++HPNF WG     + G + Q ++S  PG++Q     Q HQ Q +Q              
Sbjct: 180 KHHPNFSWGGQGASSSGAQGQGKQSFPPGFSQQPRPQQSHQPQGSQTSSLESLMRDYMAK 239

Query: 150 ----VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVL 205
               + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE PR +GKE C+ +TLR GK+L
Sbjct: 240 NDAVIQSQAASLRNLEVQLGQLANNLKNRPQGTLPSDTENPRRDGKEHCKAITLRSGKIL 299

[Close]

BLAST of Clc06G10760 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-13
Identity = 57/136 (41.91%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 90  ENHPNFGWGRNQPQTQGTRQ-QPQRSNNPGYNQ---GVQEHQSQRNQQ------------ 149
           ++HPNF WG     + G +Q Q ++S  PG++Q     Q HQ Q +Q             
Sbjct: 340 KHHPNFSWGGQGASSSGAQQAQGKQSFPPGFSQQPRPQQPHQPQGSQTSSLESLMRDYMA 399

Query: 150 -----VDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKV 205
                + +QAA+ RNLEVQ+GQ+A+ LK RPQG LPSDTE PR +GKE C+ VTLR GK+
Sbjct: 400 KNDAVIQSQAASLRNLEVQLGQLANDLKNRPQGTLPSDTENPRRDGKEHCKAVTLRSGKI 459

[Close]

BLAST of Clc06G10760 vs. NCBI nr
Match: XP_030497803.1 (uncharacterized protein LOC115713460 [Cannabis sativa])

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-13
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 0


Query: 90  ENHPNFGWGRNQPQT--QGTRQQPQRSNNPGYNQGVQ---------EHQSQRNQQVDNQA 149
           ++HPNF WG    Q+   G  QQP R   P   QG Q         ++ ++ +  + +QA
Sbjct: 332 KHHPNFSWGGQGKQSFPPGFSQQP-RPQQPHQPQGSQTSSLESLMRDYMAKNDTVIQSQA 391

Query: 150 AATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVLPT------- 209
           A+ RNLEVQ+GQ+A+ LK RPQG LPSDTE PR +GKE C+ VTLR GK++ +       
Sbjct: 392 ASLRNLEVQLGQLANDLKNRPQGTLPSDTENPRRDGKEHCKAVTLRSGKIIESNVAATRS 451

Query: 210 -ETQDIRAQGNLQPHITSQPIPSTPI 217
            E   I+ +G ++    +  +   P+
Sbjct: 452 KEPSSIQKEGEMKKKPATSAVEIPPV 476

[Close]

BLAST of Clc06G10760 vs. ExPASy TrEMBL
Match: A0A6J1DWK1 (uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025053 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 53/124 (42.74%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 91  NHPNFGW-----GRNQPQTQGTRQQPQRSNNPGY---NQGVQEHQSQ------------- 150
           NHPNFGW     G N   +     Q + S  PG+    Q V+ +QS+             
Sbjct: 199 NHPNFGWSGNQGGHNTGISNAPTFQQKVSYPPGFAYQGQMVEHNQSKGSITSLENIMKQY 258

Query: 151 ---RNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGG 191
               +  V +QAA+ RNLE+Q+GQ+A  LK RP GALPSDTE P+ + KEQC  +TLR G
Sbjct: 259 MANNDATVQSQAASLRNLELQVGQLAMDLKSRPVGALPSDTEVPKRDSKEQCNALTLRSG 318

[Close]

BLAST of Clc06G10760 vs. ExPASy TrEMBL
Match: A0A5B6VWJ0 (Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 0


Query: 91  NHPNFGWGRNQPQTQGTRQQPQRSNNPGYNQGVQE----------------HQSQRNQQV 150
           NH +F W      T     QP+ +  P + Q VQ+                + ++ +  +
Sbjct: 237 NHLDFSWSNQGAGTSTVYTQPRPTQLPNFPQQVQKLVQAKASNSLESLLKTYMAKNDALI 296

Query: 151 DNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGGKVLPTETQ 210
            +QAA  +NLE Q+GQ+A+ L+ R QGALPSDTE PR  GKE C+ +TLR  K++   T 
Sbjct: 297 QSQAATLKNLENQVGQLATELRNRLQGALPSDTENPRNLGKEHCKALTLRSEKIIEPNTV 356

Query: 211 DI-RAQGNLQPHITSQPIPSTPINNPQP 222
           ++ + Q N Q     QP   TP+ +P+P
Sbjct: 357 EVEKEQANAQDAEEVQPSVETPV-SPEP 383

[Close]

BLAST of Clc06G10760 vs. ExPASy TrEMBL
Match: A0A2N0QJ51 (Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=RhiirA1_484598 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 61/156 (39.10%), Postives = 82/156 (52.56%), Query Frame = 0


Query: 91  NHPNFGW----GRNQPQTQGTRQQPQRSNNPGYNQ-----------GVQEHQSQRNQQVD 150
           NHPNF W    G NQPQ QG +Q P++ +  G +Q           G Q H    N++ D
Sbjct: 60  NHPNFSWSNNQGYNQPQ-QGFQQGPKQYSQAGTSQQYAPKQPYHPPGFQNHGQSANERSD 119

Query: 151 ---------NQAAATRNLEVQMGQIASALKIRPQGALPSDTEAP-RGNGKEQCQVVTLRG 210
                    +QA   + LE Q+GQ+A+AL  RPQG LPSDTE P + + KEQ Q +TLR 
Sbjct: 120 MEELRLMYKSQAVTLKALETQVGQLANALLSRPQGNLPSDTEVPGKRDPKEQVQSITLRS 179

Query: 211 GKVL--PTETQDIRAQGNLQPHITSQPIPSTPINNP 220
           GK    PT T  ++ QG+    I ++   +T   NP
Sbjct: 180 GKTTTGPTSTL-VQDQGDEPQEIPAEVPSNTIRTNP 213

[Close]

BLAST of Clc06G10760 vs. ExPASy TrEMBL
Match: A0A6J1DXK5 (uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025500 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.0e-09
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 125 EHQSQRNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLR 184
           ++    +  V +QA + RNLE+Q+GQ+A+ LK +P+G LPSD + P+ +GKEQC  +TLR
Sbjct: 217 KYMENNDTTVQSQAVSLRNLEMQVGQLATDLKSKPKGVLPSDIKVPKRDGKEQCNALTLR 276

Query: 185 GGKVLPT---ETQDIRAQGN 202
            GK LPT     Q IR + N
Sbjct: 277 SGKTLPTAHPNAQGIRKELN 296

[Close]

BLAST of Clc06G10760 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.0e-09
Identity = 63/211 (29.86%), Postives = 91/211 (43.13%), Query Frame = 0


Query: 54  VCNVARATCTICVPT------IHNLSAMFRTTH----TLRPIIQV----GENHPNFGW-- 113
           VC V    C+ C          HN +++F   H       P          +HPNF W  
Sbjct: 98  VCQVNDLICSFCSENHIYDXCPHNPASVFYVGHGNNRNFNPYSNTYNPGWRHHPNFSWXG 157

Query: 114 -----GRNQPQTQGTRQ-----------------------QPQRSNNPGYNQGVQEHQSQ 173
                G NQ Q+Q  +Q                        P ++NN      ++E+ ++
Sbjct: 158 QGGSXGFNQGQSQQNKQPYVPPTQQYIPPPQQRYNQRTQTPPVQNNNSNLENMMKEYMAR 217

Query: 174 RNQQVDNQAAATRNLEVQMGQIASALKIRPQGALPSDTEAPRGNGKEQCQVVTLRGG--- 216
            +  + +QAA+ RN E Q+GQ+A+ LK RPQG+ P  TE P+  GKEQC+ VTLR G   
Sbjct: 218 TDAVIQSQAASMRNFETQLGQLANELKNRPQGSFPXHTELPKREGKEQCKAVTLRSGLAY 277

The following BLAST results are available for this feature:

BLAST of Clc06G10760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030507648.1	2.0e-14	44.92	uncharacterized protein LOC115722545 [Cannabis sativa]	[more]
XP_030503898.1	2.0e-14	41.48	uncharacterized protein LOC115719117 [Cannabis sativa]	[more]
XP_030498047.1	3.4e-14	41.48	uncharacterized protein LOC115713707 [Cannabis sativa]	[more]
XP_030509259.1	1.3e-13	41.91	uncharacterized protein LOC115723937 [Cannabis sativa]	[more]
XP_030497803.1	3.7e-13	38.36	uncharacterized protein LOC115713460 [Cannabis sativa]	[more]

BLAST of Clc06G10760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G10760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWK1	1.1e-10	42.74	uncharacterized protein LOC111025053 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5B6VWJ0	3.2e-10	35.14	Retroelement pol polyprotein-like OS=Gossypium australe OX=47621 GN=EPI10_024080...	[more]
A0A2N0QJ51	3.5e-09	39.10	Uncharacterized protein (Fragment) OS=Rhizophagus irregularis OX=588596 GN=Rhiir...	[more]
A0A6J1DXK5	6.0e-09	46.25	uncharacterized protein LOC111025500 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DYG0	6.0e-09	29.86	uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Clc06G10760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10760.1	Clc06G10760.1	mRNA