Clc06G10720 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10720
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr06: 18473745 .. 18475057 (-)
RNA-Seq Expression	Clc06G10720
Synteny	Clc06G10720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGCAGAGAGTCAGGAACCGTGGTATGCAGACATAGTAAATTACTTGGTCTGCAACCAATGGCCTGAAGAATTGAATGCTCAACAAAAGAAAAAGCTCCAATATGAAAGTAAGTTTTACTGCTGGGATGAGCCATATCTATACAGACTTGGCTCGGACCACATACTGCGTCGATGTGTTCCAGAATATGAAACGCATAGCATTTTGAGAAGCTGTCATGAAGCACCTTACGGAGGACACTTTGGGGGCAGAGAACAACTACAAAGGTGCTGCAAAGTAGGTATTTCTGGCCCACATTATTCAAAGACGCAAGGGCATATGCGGTGGCTTGTGATCATTGTCAAAGGACAGTCAACATTTCCAACCAAAATGAGATGCCTCTAAACTCAATGCTGGAAGTTGAGTTGTTTGACGTATGGGGAATCGATTTCATGGGACCATTTCCTCCCTCTTGCGGTAATCAATATATCCTAGTAGCGGTTGACTACGTATCAAAATGGGTAGAAGCAGCAGCCTGTGCGAAGAACGACGCAAACACAGTGTCCAAGTTCTTAAAGAAACAAATCTTCTCTCGATTTGGGACACCAAGGGCGATAATTAGTGATGAAGGTACAGATTTTATAAATCGCATAATCACTAATTTACTGACAAAATTTAATGTCTCGCACAGGGTAGCAACTACTTATCACCCACAGACAAACGGCCAAGCCGAAATAACAAACCGGGAGATCAAGTCCATACTTGAAAAAGTCGTGAGCACATCAAGGAAAGATTGGATAGAGAGATTAGATGAAGCTCTATGGGCATACAGAACGGCATTCAAAACACCTATAGGCATGTCACCCTATGCACTGGTGTTTGGGAAAGCATGCCATCTCCCGCTTGAGCTGGAACACAAGGCCATCTGAGCTATGAAAAAGCTCAATCTAGACCAGGACGCAAGTGGCGAAGCAAGAAAGCTTCAATTAAACGAACTCCTCAAATGGAGACATTCAGCTTACGAAAACGCAAAGCTGTATAAGGAAAGGACCAAGAAATGGCACGACAAAAATATTAGTAAGAAAACTCTATACGTCGGCCAGAAGGTCCTATTATTTAACTCAAAGTTGCGTTTATTTCCAGGTAAGCTGAAATCTCGCTGGTCTGGACCATTTATAATCAAGGAAGTGTCCCCGCATGGTGCTGTCAAGCTCACAAATGAAGACGAAACCACATCCTTCAAGGTCAATGGACAAAGGGTAAAACCCTACCACATTGAAGAGCTCGAAATCGACAAAACCTCCATTGACCTACACGAGTGTAATGACTGA

mRNA sequence

ATGAACGCAGAGAGTCAGGAACCGTGGTATGCAGACATAGTAAATTACTTGGTCTGCAACCAATGGCCTGAAGAATTGAATGCTCAACAAAAGAAAAAGCTCCAATATGAAAGTAAGTTTTACTGCTGGGATGAGCCATATCTATACAGACTTGGCTCGGACCACATACTGCGTCGATGTGTTCCAGAATATGAAACGCATAGCATTTTGAGAAGCTGTCATGAAGCACCTTACGGAGGACACTTTGGGGGCAGAGAACAACTACAAAGGACAGTCAACATTTCCAACCAAAATGAGATGCCTCTAAACTCAATGCTGGAAGTTGAGTTGTTTGACGTATGGGGAATCGATTTCATGGGACCATTTCCTCCCTCTTGCGGTAATCAATATATCCTAGTAGCGGTTGACTACGTATCAAAATGGGTAGAAGCAGCAGCCTGTGCGAAGAACGACGCAAACACAGTGTCCAAGTTCTTAAAGAAACAAATCTTCTCTCGATTTGGGACACCAAGGGCGATAATTAGTGATGAAGGTACAGATTTTATAAATCGCATAATCACTAATTTACTGACAAAATTTAATGTCTCGCACAGGGTAGCAACTACTTATCACCCACAGACAAACGGCCAAGCCGAAATAACAAACCGGGAGATCAAGTCCATACTTGAAAAAGTCGTGAGCACATCAAGGAAAGATTGGATAGAGAGATTAGATGAAGCTCTATGGGCATACAGAACGGCATTCAAAACACCTATAGGCATGTCACCCTATGCACTGGACGCAAGTGGCGAAGCAAGAAAGCTTCAATTAAACGAACTCCTCAAATGGAGACATTCAGCTTACGAAAACGCAAAGCTGTATAAGGAAAGGACCAAGAAATGGCACGACAAAAATATTAGTAAGAAAACTCTATACGTCGGCCAGAAGGTCCTATTATTTAACTCAAAGTTGCGTTTATTTCCAGGTAAGCTGAAATCTCGCTGGTCTGGACCATTTATAATCAAGGAAGTGTCCCCGCATGGTGCTGTCAAGCTCACAAATGAAGACGAAACCACATCCTTCAAGGTCAATGGACAAAGGGTAAAACCCTACCACATTGAAGAGCTCGAAATCGACAAAACCTCCATTGACCTACACGAGTGTAATGACTGA

Coding sequence (CDS)

ATGAACGCAGAGAGTCAGGAACCGTGGTATGCAGACATAGTAAATTACTTGGTCTGCAACCAATGGCCTGAAGAATTGAATGCTCAACAAAAGAAAAAGCTCCAATATGAAAGTAAGTTTTACTGCTGGGATGAGCCATATCTATACAGACTTGGCTCGGACCACATACTGCGTCGATGTGTTCCAGAATATGAAACGCATAGCATTTTGAGAAGCTGTCATGAAGCACCTTACGGAGGACACTTTGGGGGCAGAGAACAACTACAAAGGACAGTCAACATTTCCAACCAAAATGAGATGCCTCTAAACTCAATGCTGGAAGTTGAGTTGTTTGACGTATGGGGAATCGATTTCATGGGACCATTTCCTCCCTCTTGCGGTAATCAATATATCCTAGTAGCGGTTGACTACGTATCAAAATGGGTAGAAGCAGCAGCCTGTGCGAAGAACGACGCAAACACAGTGTCCAAGTTCTTAAAGAAACAAATCTTCTCTCGATTTGGGACACCAAGGGCGATAATTAGTGATGAAGGTACAGATTTTATAAATCGCATAATCACTAATTTACTGACAAAATTTAATGTCTCGCACAGGGTAGCAACTACTTATCACCCACAGACAAACGGCCAAGCCGAAATAACAAACCGGGAGATCAAGTCCATACTTGAAAAAGTCGTGAGCACATCAAGGAAAGATTGGATAGAGAGATTAGATGAAGCTCTATGGGCATACAGAACGGCATTCAAAACACCTATAGGCATGTCACCCTATGCACTGGACGCAAGTGGCGAAGCAAGAAAGCTTCAATTAAACGAACTCCTCAAATGGAGACATTCAGCTTACGAAAACGCAAAGCTGTATAAGGAAAGGACCAAGAAATGGCACGACAAAAATATTAGTAAGAAAACTCTATACGTCGGCCAGAAGGTCCTATTATTTAACTCAAAGTTGCGTTTATTTCCAGGTAAGCTGAAATCTCGCTGGTCTGGACCATTTATAATCAAGGAAGTGTCCCCGCATGGTGCTGTCAAGCTCACAAATGAAGACGAAACCACATCCTTCAAGGTCAATGGACAAAGGGTAAAACCCTACCACATTGAAGAGCTCGAAATCGACAAAACCTCCATTGACCTACACGAGTGTAATGACTGA

Protein sequence

MNAESQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEYETHSILRSCHEAPYGGHFGGREQLQRTVNISNQNEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYALDASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKVLLFNSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELEIDKTSIDLHECND

Homology

[Close]

BLAST of Clc06G10720 vs. NCBI nr
Match: WP_217833161.1 (DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 535.8 bits (1379), Expect = 3.0e-148
Identity = 266/344 (77.33%), Postives = 278/344 (80.81%), Query Frame = 0


Query: 1   MNAESQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRC 60
           M A+SQEPWY DIVNYLVCNQWPEE NA QKKKL++ESKFYCWDEPYLYRLG DHILRRC
Sbjct: 23  MKAKSQEPWYTDIVNYLVCNQWPEEFNAHQKKKLRHESKFYCWDEPYLYRLGLDHILRRC 82

Query: 61  VPEYETHSILRSCHEAPYGGHFGGR---------------------------EQLQRTVN 120
           VPEYETHSIL+SCHEAPYGGHFGG+                           ++ QRT N
Sbjct: 83  VPEYETHSILKSCHEAPYGGHFGGQRTAAKVLQSGYFWPTLFKDARAYAVACDRCQRTGN 142

Query: 121 ISNQNEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDAN 180
           ISN+NEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDAN
Sbjct: 143 ISNRNEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDAN 202

Query: 181 TVSKFLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEI 240
           TVSKFLKKQIFSRFGTPRAIISDEGT FINRIITNLLTKFNVSHRVAT YHPQTN QAEI
Sbjct: 203 TVSKFLKKQIFSRFGTPRAIISDEGTHFINRIITNLLTKFNVSHRVATAYHPQTNDQAEI 262

Query: 241 TNREIKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL-------------- 291
           TN+EIKSILEKVVSTSRKDW ERLDEALWAYRT FKTPIGMSPYAL              
Sbjct: 263 TNQEIKSILEKVVSTSRKDWTERLDEALWAYRTTFKTPIGMSPYALVFGKACHLSLELEH 322

[Close]

BLAST of Clc06G10720 vs. NCBI nr
Match: PIM97577.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 474.6 bits (1220), Expect = 8.3e-130
Identity = 241/430 (56.05%), Postives = 294/430 (68.37%), Query Frame = 0


Query: 5    SQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEY 64
            S  PWYADIVNYL C   P +L+AQQKKK  ++++ Y WD+P+L++ G D+ILRRCVPE 
Sbjct: 1146 SDVPWYADIVNYLTCGIIPFDLSAQQKKKFLFDTRRYFWDDPFLFKQGPDNILRRCVPEI 1205

Query: 65   ETHSILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQ 124
            E + IL  CH +PYGGHF G                            ++ QRT NIS +
Sbjct: 1206 EMNDILEQCHASPYGGHFHGDRTAAKILQSGFFWPNLFKDAHSFVANCDRCQRTGNISRR 1265

Query: 125  NEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSK 184
            +EMPLN++LEVELFDVWGIDFMGPF PS GN YILVAVDYVSKWVEAAA   ND+  V  
Sbjct: 1266 HEMPLNTILEVELFDVWGIDFMGPFIPSFGNMYILVAVDYVSKWVEAAAVPNNDSKVVVN 1325

Query: 185  FLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNRE 244
            F+KK IF+RFGTPRAIISD GT F NR    LL+K+ V H+++T YHPQT+GQ E++NRE
Sbjct: 1326 FIKKNIFTRFGTPRAIISDGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNRE 1385

Query: 245  IKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL------------------ 304
            IK ILEK VS++RKDW +RLDEALWAYRTA+KTPIGMSPY L                  
Sbjct: 1386 IKRILEKTVSSTRKDWSKRLDEALWAYRTAYKTPIGMSPYRLVFGKACHLPVELEHNAYW 1445

Query: 305  ---------DASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKV 364
                      A+GE R LQLNEL ++R  AYENAK+YKE+ K+WH+K I ++    GQ V
Sbjct: 1446 AIRKLNFDMQAAGEKRLLQLNELDEFRLHAYENAKIYKEKKKRWHEKKIVERHFEPGQYV 1505

Query: 365  LLFNSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELE 381
            LLFNS+L+LFPGKLKSRWSGPF I EV PHGAV+L N++    FKVN QR+K Y  E ++
Sbjct: 1506 LLFNSRLKLFPGKLKSRWSGPFRITEVFPHGAVELENKNSRNRFKVNAQRIKHYWGEIVD 1565

[Close]

BLAST of Clc06G10720 vs. NCBI nr
Match: PIN14790.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 469.2 bits (1206), Expect = 3.5e-128
Identity = 240/430 (55.81%), Postives = 292/430 (67.91%), Query Frame = 0


Query: 5    SQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEY 64
            S  PWYADIVNYL C   P +L+AQQKKK+ ++++ Y WD+ +L++ G D+ILRRCVPE 
Sbjct: 845  SDVPWYADIVNYLTCGIIPFDLSAQQKKKILFDTRRYFWDDLFLFKQGPDNILRRCVPEM 904

Query: 65   ETHSILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQ 124
            E + IL  CH +PYGGHF G                            ++ QRT NIS +
Sbjct: 905  EMNDILEQCHASPYGGHFHGDRTAAKILQSGFFWPNLFKDANSFVANCDRCQRTGNISRR 964

Query: 125  NEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSK 184
            +EMPLN++LEVELFDVWGIDFMG F PS GN YILVAVDYVSKWVEA A   ND+  V  
Sbjct: 965  HEMPLNTILEVELFDVWGIDFMGLFVPSFGNMYILVAVDYVSKWVEAVAVPNNDSKVVVN 1024

Query: 185  FLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNRE 244
            F+KK IF+RFGTPRAIIS+ GT F NR    LL+K+ V H+++T YHPQT+GQ E++NRE
Sbjct: 1025 FIKKNIFTRFGTPRAIISNGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNRE 1084

Query: 245  IKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL------------------ 304
            IK ILEK VS++RKDW +RLDEALWAYRTAFKTPIGMSPY L                  
Sbjct: 1085 IKRILEKTVSSTRKDWSKRLDEALWAYRTAFKTPIGMSPYKLVFGKACHLPVELEHNAYW 1144

Query: 305  ---------DASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKV 364
                      A+GE R LQLNEL ++R  AYENAK+YKE+TK+WHDK I ++    GQ V
Sbjct: 1145 AIRKLNFDMQAAGEKRLLQLNELDEFRLQAYENAKIYKEKTKRWHDKKIVERRFEPGQYV 1204

Query: 365  LLFNSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELE 381
            LLFNS+L+LFPGKLKSRWSGPF + EV  HGAV+L NE+    FKVN QR+K Y    ++
Sbjct: 1205 LLFNSRLKLFPGKLKSRWSGPFRVTEVFSHGAVELENENSKNRFKVNAQRIKHYWGGVID 1264

[Close]

BLAST of Clc06G10720 vs. NCBI nr
Match: PNY03357.1 (hypothetical protein L195_g026684, partial [Trifolium pratense])

HSP 1 Score: 464.9 bits (1195), Expect = 6.6e-127
Identity = 234/425 (55.06%), Postives = 286/425 (67.29%), Query Frame = 0


Query: 8   PWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEYETH 67
           PW+AD  NY+V    P +  +QQ+KK  ++ KFY WDEP+LY+ G D +LRRCVPE E  
Sbjct: 71  PWFADFANYMVGKTIPSDFTSQQRKKFLHDCKFYVWDEPFLYKRGVDGLLRRCVPEDEQE 130

Query: 68  SILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQNEM 127
            +L  CH++ YGGHF G                            ++ QRT NIS +NEM
Sbjct: 131 KVLWHCHDSSYGGHFSGDRTAAKVLQSGLFWPTLFKDAFTYVKRCDRCQRTGNISKRNEM 190

Query: 128 PLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLK 187
           P N +LEVE+FDVWGIDFMGPFP S    YILVAVDYVSKWVEA A   NDA  V  FLK
Sbjct: 191 PQNPVLEVEIFDVWGIDFMGPFPSSYSKTYILVAVDYVSKWVEAIATQTNDAQVVVSFLK 250

Query: 188 KQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKS 247
           K IFSRFG PRA+ISDEGT F+NR +  LL K+NV HR+AT YHPQT+GQ E++NR+IK 
Sbjct: 251 KNIFSRFGVPRALISDEGTHFLNRKMEALLRKYNVHHRIATPYHPQTSGQVEVSNRQIKQ 310

Query: 248 ILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYA---------------------- 307
           ILEK V++SRKDW  +LD+ALWAYRTAFKTPIGMSP+                       
Sbjct: 311 ILEKTVNSSRKDWSLKLDDALWAYRTAFKTPIGMSPFQIVYGKSCHLPLELEHKALWATK 370

Query: 308 -----LDASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKVLLF 367
                L  +GE+R LQL+EL ++R+ AYENAK++KE+TKKWHDK I  +    GQ VLLF
Sbjct: 371 FLNFDLSKAGESRILQLHELDEFRNFAYENAKIFKEKTKKWHDKKIQNREFREGQLVLLF 430

Query: 368 NSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELEIDK 379
           NS+L+LFPGKLKSRWSGPF IK+V PHGAV+L + D   +FKVNGQR+KPY  +E  + +
Sbjct: 431 NSRLKLFPGKLKSRWSGPFKIKKVFPHGAVELEDRDTDQTFKVNGQRLKPYFGKESILPR 490

[Close]

BLAST of Clc06G10720 vs. NCBI nr
Match: PIN00904.1 (DNA-directed DNA polymerase [Handroanthus impetiginosus])

HSP 1 Score: 462.2 bits (1188), Expect = 4.3e-126
Identity = 237/432 (54.86%), Postives = 290/432 (67.13%), Query Frame = 0


Query: 5    SQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEY 64
            S  PWYADIVNYL C   P +L+ QQKKK+ ++++ Y W++P+L + G D+ILRRCVPE 
Sbjct: 1139 SNVPWYADIVNYLTCGIIPFDLSTQQKKKILFDTRRYFWNDPFLLKQGPDNILRRCVPEI 1198

Query: 65   ETHSILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQ 124
            E + IL  CH +PYGGHF G                            ++ QRT NIS +
Sbjct: 1199 EMNDILEQCHASPYGGHFHGDRTAAKILQSGFFWPNLFKDAHSFVANCDRCQRTRNISRR 1258

Query: 125  NEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSK 184
            +EMPLN++LEVELFDVWGIDFMGPF PS GN YILVAVDYVSKWVEAAA   ND+  V  
Sbjct: 1259 HEMPLNTILEVELFDVWGIDFMGPFVPSFGNMYILVAVDYVSKWVEAAAVPNNDSKVVVN 1318

Query: 185  FLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNRE 244
            F+KK IF+RFGTPRAIISD  T F NR    LL+K+ V H++ T YHPQT+G  E++NRE
Sbjct: 1319 FIKKNIFTRFGTPRAIISDGETYFCNRSFEALLSKYGVKHKIFTPYHPQTSGHVEVSNRE 1378

Query: 245  IKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL------------------ 304
            IK ILEK VS++RKDW +RLDEALWAYRTA+KTPIGMSPY L                  
Sbjct: 1379 IKRILEKTVSSTRKDWSKRLDEALWAYRTAYKTPIGMSPYHLIFGKACHLPVELEHNAYW 1438

Query: 305  ---------DASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKV 364
                      A+GE R LQLNEL ++R  AYENAK+YKE+TK+WHDK I ++    GQ V
Sbjct: 1439 AICKLNFDMQAAGEKRLLQLNELDEFRLHAYENAKIYKEKTKRWHDKKIVERHFEPGQYV 1498

Query: 365  LLFNSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELE 383
            LLFNS+L+LFPGKLKSRW G F I EV PHGAV+L NE+    FK+N +R+K Y    ++
Sbjct: 1499 LLFNSRLKLFPGKLKSRWFGLFRITEVFPHGAVELENENSRNRFKINARRIKHYWGGIID 1558

[Close]

BLAST of Clc06G10720 vs. ExPASy Swiss-Prot
Match: P26810 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol PE=3 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 8.1e-19
Identity = 71/242 (29.34%), Postives = 111/242 (45.87%), Query Frame = 0


Query: 114  WGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAI 173
            W IDF    P   G +Y+LV VD  S WVEA    K  A  V+K L ++IF RFG P+ +
Sbjct: 1453 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 1512

Query: 174  ISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKSILEKV-VSTSRKD 233
             +D G  F++++   +     V  ++   Y PQ++GQ E  NR IK  L K+ ++T  +D
Sbjct: 1513 GTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRD 1572

Query: 234  WIERLDEALWAYRTAFKTPIGMSPYAL--DASGEARKLQLNELLKWRHSAYENA---KLY 293
            W+  L  AL+  R     P G++PY +   A          ++ K  H+    A    LY
Sbjct: 1573 WVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPLVNFPDPDMAKVTHNPSLQAHLQALY 1632

Query: 294  KERTKKWH----------DKNISKKTLYVGQKVLLFNSKLRLFPGKLKSRWSGPFIIKEV 340
              + + W           D+ +      VG  V +   + +     L+ RW GP+ +   
Sbjct: 1633 LVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVRRHQTK----NLEPRWKGPYTVLLT 1689

[Close]

BLAST of Clc06G10720 vs. ExPASy Swiss-Prot
Match: P26808 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 GN=pol PE=3 SV=2)

HSP 1 Score: 96.3 bits (238), Expect = 8.1e-19
Identity = 71/242 (29.34%), Postives = 111/242 (45.87%), Query Frame = 0


Query: 114  WGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAI 173
            W IDF    P   G +Y+LV VD  S WVEA    K  A  V+K L ++IF RFG P+ +
Sbjct: 1452 WEIDFTEVKPGLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 1511

Query: 174  ISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKSILEKV-VSTSRKD 233
             +D G  F++++   +     V  ++   Y PQ++GQ E  NR IK  L K+ ++T  +D
Sbjct: 1512 GTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRD 1571

Query: 234  WIERLDEALWAYRTAFKTPIGMSPYAL--DASGEARKLQLNELLKWRHSAYENA---KLY 293
            W+  L  AL+  R     P G++PY +   A          ++ K  H+    A    LY
Sbjct: 1572 WVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPLVNFPDPDMAKVTHNPSLQAHLQALY 1631

Query: 294  KERTKKWH----------DKNISKKTLYVGQKVLLFNSKLRLFPGKLKSRWSGPFIIKEV 340
              + + W           D+ +      VG  V +   + +     L+ RW GP+ +   
Sbjct: 1632 LVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVRRHQTK----NLEPRWKGPYTVLLT 1688

[Close]

BLAST of Clc06G10720 vs. ExPASy Swiss-Prot
Match: P08361 (Gag-Pol polyprotein OS=Cas-Br-E murine leukemia virus OX=11792 GN=gag-pol PE=3 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-18
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 0


Query: 114  WGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAI 173
            W IDF    P   G +Y+LV VD  S W+EA    K  A  V+K L ++IF RFG P+ +
Sbjct: 1450 WEIDFTEVKPGLYGYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 1509

Query: 174  ISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKSILEKV-VSTSRKD 233
             +D G  F++++   +     +  ++   Y PQ++GQ E  NR IK  L K+ ++T  +D
Sbjct: 1510 GTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRD 1569

Query: 234  WIERLDEALWAYRTAFKTPIGMSPYAL 260
            W+  L  AL+  R     P G++PY +
Sbjct: 1570 WVLLLPLALYRARNT-PGPHGLTPYEI 1595

[Close]

BLAST of Clc06G10720 vs. ExPASy Swiss-Prot
Match: P26809 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=pol PE=3 SV=2)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-18
Identity = 70/242 (28.93%), Postives = 111/242 (45.87%), Query Frame = 0


Query: 114  WGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAI 173
            W IDF    P   G +Y+LV +D  S WVEA    K  A  V+K L ++IF RFG P+ +
Sbjct: 1452 WEIDFTEVKPGLYGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVL 1511

Query: 174  ISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKSILEKV-VSTSRKD 233
             +D G  F++++   +     V  ++   Y PQ++GQ E  NR IK  L K+ ++T  +D
Sbjct: 1512 GTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRD 1571

Query: 234  WIERLDEALWAYRTAFKTPIGMSPYAL--DASGEARKLQLNELLKWRHSAYENA---KLY 293
            W+  L  AL+  R     P G++PY +   A          ++ K  H+    A    LY
Sbjct: 1572 WVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPLVNFPDPDMAKVTHNPSLQAHLQALY 1631

Query: 294  KERTKKWH----------DKNISKKTLYVGQKVLLFNSKLRLFPGKLKSRWSGPFIIKEV 340
              + + W           D+ +      VG  V +   + +     L+ RW GP+ +   
Sbjct: 1632 LVQHEVWRPLAAAYQEQLDRPVVPHPFRVGDTVWVRRHQTK----NLEPRWKGPYTVLLT 1688

[Close]

BLAST of Clc06G10720 vs. ExPASy Swiss-Prot
Match: P31792 (Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-18
Identity = 54/147 (36.73%), Postives = 78/147 (53.06%), Query Frame = 0


Query: 114 WGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLKKQIFSRFGTPRAI 173
           W IDF    P   G +Y+LV VD  S WVEA    +  A+ V+K + ++IF RFG P+ I
Sbjct: 765 WEIDFTEVKPHYAGYKYLLVFVDTFSGWVEAYPTRQETAHMVAKKILEEIFPRFGLPKVI 824

Query: 174 ISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKSILEKV-VSTSRKD 233
            SD G  F++++   L     ++ ++   Y PQ++GQ E  NR IK  L K+ + T  KD
Sbjct: 825 GSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD 884

Query: 234 WIERLDEALWAYRTAFKTPIGMSPYAL 260
           W   L  AL   R       G++PY +
Sbjct: 885 WRRLLSLALLRARNT-PNRFGLTPYEI 910

[Close]

BLAST of Clc06G10720 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 4.0e-130
Identity = 241/430 (56.05%), Postives = 294/430 (68.37%), Query Frame = 0


Query: 5    SQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEY 64
            S  PWYADIVNYL C   P +L+AQQKKK  ++++ Y WD+P+L++ G D+ILRRCVPE 
Sbjct: 1146 SDVPWYADIVNYLTCGIIPFDLSAQQKKKFLFDTRRYFWDDPFLFKQGPDNILRRCVPEI 1205

Query: 65   ETHSILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQ 124
            E + IL  CH +PYGGHF G                            ++ QRT NIS +
Sbjct: 1206 EMNDILEQCHASPYGGHFHGDRTAAKILQSGFFWPNLFKDAHSFVANCDRCQRTGNISRR 1265

Query: 125  NEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSK 184
            +EMPLN++LEVELFDVWGIDFMGPF PS GN YILVAVDYVSKWVEAAA   ND+  V  
Sbjct: 1266 HEMPLNTILEVELFDVWGIDFMGPFIPSFGNMYILVAVDYVSKWVEAAAVPNNDSKVVVN 1325

Query: 185  FLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNRE 244
            F+KK IF+RFGTPRAIISD GT F NR    LL+K+ V H+++T YHPQT+GQ E++NRE
Sbjct: 1326 FIKKNIFTRFGTPRAIISDGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNRE 1385

Query: 245  IKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL------------------ 304
            IK ILEK VS++RKDW +RLDEALWAYRTA+KTPIGMSPY L                  
Sbjct: 1386 IKRILEKTVSSTRKDWSKRLDEALWAYRTAYKTPIGMSPYRLVFGKACHLPVELEHNAYW 1445

Query: 305  ---------DASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKV 364
                      A+GE R LQLNEL ++R  AYENAK+YKE+ K+WH+K I ++    GQ V
Sbjct: 1446 AIRKLNFDMQAAGEKRLLQLNELDEFRLHAYENAKIYKEKKKRWHEKKIVERHFEPGQYV 1505

Query: 365  LLFNSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELE 381
            LLFNS+L+LFPGKLKSRWSGPF I EV PHGAV+L N++    FKVN QR+K Y  E ++
Sbjct: 1506 LLFNSRLKLFPGKLKSRWSGPFRITEVFPHGAVELENKNSRNRFKVNAQRIKHYWGEIVD 1565

[Close]

BLAST of Clc06G10720 vs. ExPASy TrEMBL
Match: A0A2G9HBV9 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12579 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.7e-128
Identity = 240/430 (55.81%), Postives = 292/430 (67.91%), Query Frame = 0


Query: 5    SQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEY 64
            S  PWYADIVNYL C   P +L+AQQKKK+ ++++ Y WD+ +L++ G D+ILRRCVPE 
Sbjct: 845  SDVPWYADIVNYLTCGIIPFDLSAQQKKKILFDTRRYFWDDLFLFKQGPDNILRRCVPEM 904

Query: 65   ETHSILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQ 124
            E + IL  CH +PYGGHF G                            ++ QRT NIS +
Sbjct: 905  EMNDILEQCHASPYGGHFHGDRTAAKILQSGFFWPNLFKDANSFVANCDRCQRTGNISRR 964

Query: 125  NEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSK 184
            +EMPLN++LEVELFDVWGIDFMG F PS GN YILVAVDYVSKWVEA A   ND+  V  
Sbjct: 965  HEMPLNTILEVELFDVWGIDFMGLFVPSFGNMYILVAVDYVSKWVEAVAVPNNDSKVVVN 1024

Query: 185  FLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNRE 244
            F+KK IF+RFGTPRAIIS+ GT F NR    LL+K+ V H+++T YHPQT+GQ E++NRE
Sbjct: 1025 FIKKNIFTRFGTPRAIISNGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNRE 1084

Query: 245  IKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL------------------ 304
            IK ILEK VS++RKDW +RLDEALWAYRTAFKTPIGMSPY L                  
Sbjct: 1085 IKRILEKTVSSTRKDWSKRLDEALWAYRTAFKTPIGMSPYKLVFGKACHLPVELEHNAYW 1144

Query: 305  ---------DASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKV 364
                      A+GE R LQLNEL ++R  AYENAK+YKE+TK+WHDK I ++    GQ V
Sbjct: 1145 AIRKLNFDMQAAGEKRLLQLNELDEFRLQAYENAKIYKEKTKRWHDKKIVERRFEPGQYV 1204

Query: 365  LLFNSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELE 381
            LLFNS+L+LFPGKLKSRWSGPF + EV  HGAV+L NE+    FKVN QR+K Y    ++
Sbjct: 1205 LLFNSRLKLFPGKLKSRWSGPFRVTEVFSHGAVELENENSKNRFKVNAQRIKHYWGGVID 1264

[Close]

BLAST of Clc06G10720 vs. ExPASy TrEMBL
Match: A0A2K3NJZ5 (Integrase catalytic domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g026684 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 3.2e-127
Identity = 234/425 (55.06%), Postives = 286/425 (67.29%), Query Frame = 0


Query: 8   PWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEYETH 67
           PW+AD  NY+V    P +  +QQ+KK  ++ KFY WDEP+LY+ G D +LRRCVPE E  
Sbjct: 71  PWFADFANYMVGKTIPSDFTSQQRKKFLHDCKFYVWDEPFLYKRGVDGLLRRCVPEDEQE 130

Query: 68  SILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQNEM 127
            +L  CH++ YGGHF G                            ++ QRT NIS +NEM
Sbjct: 131 KVLWHCHDSSYGGHFSGDRTAAKVLQSGLFWPTLFKDAFTYVKRCDRCQRTGNISKRNEM 190

Query: 128 PLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLK 187
           P N +LEVE+FDVWGIDFMGPFP S    YILVAVDYVSKWVEA A   NDA  V  FLK
Sbjct: 191 PQNPVLEVEIFDVWGIDFMGPFPSSYSKTYILVAVDYVSKWVEAIATQTNDAQVVVSFLK 250

Query: 188 KQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKS 247
           K IFSRFG PRA+ISDEGT F+NR +  LL K+NV HR+AT YHPQT+GQ E++NR+IK 
Sbjct: 251 KNIFSRFGVPRALISDEGTHFLNRKMEALLRKYNVHHRIATPYHPQTSGQVEVSNRQIKQ 310

Query: 248 ILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYA---------------------- 307
           ILEK V++SRKDW  +LD+ALWAYRTAFKTPIGMSP+                       
Sbjct: 311 ILEKTVNSSRKDWSLKLDDALWAYRTAFKTPIGMSPFQIVYGKSCHLPLELEHKALWATK 370

Query: 308 -----LDASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKVLLF 367
                L  +GE+R LQL+EL ++R+ AYENAK++KE+TKKWHDK I  +    GQ VLLF
Sbjct: 371 FLNFDLSKAGESRILQLHELDEFRNFAYENAKIFKEKTKKWHDKKIQNREFREGQLVLLF 430

Query: 368 NSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELEIDK 379
           NS+L+LFPGKLKSRWSGPF IK+V PHGAV+L + D   +FKVNGQR+KPY  +E  + +
Sbjct: 431 NSRLKLFPGKLKSRWSGPFKIKKVFPHGAVELEDRDTDQTFKVNGQRLKPYFGKESILPR 490

[Close]

BLAST of Clc06G10720 vs. ExPASy TrEMBL
Match: A0A2G9G6G2 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26592 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 2.1e-126
Identity = 237/432 (54.86%), Postives = 290/432 (67.13%), Query Frame = 0


Query: 5    SQEPWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEY 64
            S  PWYADIVNYL C   P +L+ QQKKK+ ++++ Y W++P+L + G D+ILRRCVPE 
Sbjct: 1139 SNVPWYADIVNYLTCGIIPFDLSTQQKKKILFDTRRYFWNDPFLLKQGPDNILRRCVPEI 1198

Query: 65   ETHSILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQ 124
            E + IL  CH +PYGGHF G                            ++ QRT NIS +
Sbjct: 1199 EMNDILEQCHASPYGGHFHGDRTAAKILQSGFFWPNLFKDAHSFVANCDRCQRTRNISRR 1258

Query: 125  NEMPLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSK 184
            +EMPLN++LEVELFDVWGIDFMGPF PS GN YILVAVDYVSKWVEAAA   ND+  V  
Sbjct: 1259 HEMPLNTILEVELFDVWGIDFMGPFVPSFGNMYILVAVDYVSKWVEAAAVPNNDSKVVVN 1318

Query: 185  FLKKQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNRE 244
            F+KK IF+RFGTPRAIISD  T F NR    LL+K+ V H++ T YHPQT+G  E++NRE
Sbjct: 1319 FIKKNIFTRFGTPRAIISDGETYFCNRSFEALLSKYGVKHKIFTPYHPQTSGHVEVSNRE 1378

Query: 245  IKSILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL------------------ 304
            IK ILEK VS++RKDW +RLDEALWAYRTA+KTPIGMSPY L                  
Sbjct: 1379 IKRILEKTVSSTRKDWSKRLDEALWAYRTAYKTPIGMSPYHLIFGKACHLPVELEHNAYW 1438

Query: 305  ---------DASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKV 364
                      A+GE R LQLNEL ++R  AYENAK+YKE+TK+WHDK I ++    GQ V
Sbjct: 1439 AICKLNFDMQAAGEKRLLQLNELDEFRLHAYENAKIYKEKTKRWHDKKIVERHFEPGQYV 1498

Query: 365  LLFNSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELE 383
            LLFNS+L+LFPGKLKSRW G F I EV PHGAV+L NE+    FK+N +R+K Y    ++
Sbjct: 1499 LLFNSRLKLFPGKLKSRWFGLFRITEVFPHGAVELENENSRNRFKINARRIKHYWGGIID 1558

[Close]

BLAST of Clc06G10720 vs. ExPASy TrEMBL
Match: A0A4Y1RSJ3 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_018513 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 6.0e-126
Identity = 231/427 (54.10%), Postives = 285/427 (66.74%), Query Frame = 0


Query: 8   PWYADIVNYLVCNQWPEELNAQQKKKLQYESKFYCWDEPYLYRLGSDHILRRCVPEYETH 67
           PWYAD VNYL C   P +++  QKKK     K Y WD+PYL++ G D ++RRCVPE E  
Sbjct: 162 PWYADFVNYLACGILPPDMSFYQKKKFLSLVKHYYWDDPYLWKHGPDQVIRRCVPETEMA 221

Query: 68  SILRSCHEAPYGGHFGGR---------------------------EQLQRTVNISNQNEM 127
            IL  CH    GGH+G                             +  QRT NIS++N+M
Sbjct: 222 DILLHCHTLACGGHYGASKTTAKVLQSGFFWPTLFKDAQDFVARCDPCQRTGNISSRNQM 281

Query: 128 PLNSMLEVELFDVWGIDFMGPFPPSCGNQYILVAVDYVSKWVEAAACAKNDANTVSKFLK 187
           PLN++LEVELFDVWGIDFMGPFP S GN YILVAVDYVSKWVEAAA   NDA  V +FL+
Sbjct: 282 PLNNILEVELFDVWGIDFMGPFPASYGNLYILVAVDYVSKWVEAAALPTNDAKVVVRFLR 341

Query: 188 KQIFSRFGTPRAIISDEGTDFINRIITNLLTKFNVSHRVATTYHPQTNGQAEITNREIKS 247
           K IF+RFG PRAIISD GT F NR   +LL K+ ++H+V+T YHPQT+GQ E++NRE+K 
Sbjct: 342 KNIFTRFGVPRAIISDGGTHFCNRQFNSLLAKYGITHKVSTPYHPQTSGQVEVSNRELKK 401

Query: 248 ILEKVVSTSRKDWIERLDEALWAYRTAFKTPIGMSPYAL--------------------- 307
           ILEK VS SRKDW  +LD+ALWAYRTAFK PIGMSPY L                     
Sbjct: 402 ILEKTVSASRKDWSLKLDDALWAYRTAFKAPIGMSPYRLVFGKACHLPVELEHKAFWAIK 461

Query: 308 ------DASGEARKLQLNELLKWRHSAYENAKLYKERTKKWHDKNISKKTLYVGQKVLLF 367
                  ++GE RKLQLNEL + R+ +YENAK+YK+RTKKWHDK+I KK  YVGQ VLL+
Sbjct: 462 TLNFDMSSAGEKRKLQLNELEELRNESYENAKIYKDRTKKWHDKHILKKEFYVGQSVLLY 521

Query: 368 NSKLRLFPGKLKSRWSGPFIIKEVSPHGAVKLTNEDETTSFKVNGQRVKPYHIEELEIDK 381
           NS+L+LFPGKL+SRWSGPF +  V P+G V++ N+ + T+FKVNG R+KPY       ++
Sbjct: 522 NSRLKLFPGKLRSRWSGPFTVLTVYPYGTVEIKNDRDGTTFKVNGHRLKPYVAAAFLEEE 581

[Close]

BLAST of Clc06G10720 vs. TAIR 10
Match: ATMG00750.1 (GAG/POL/ENV polyprotein )

HSP 1 Score: 43.5 bits (101), Expect = 4.4e-04
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 0


Query: 80  GHFGGREQLQRTVNISNQNEMPLNSMLEVELFDVWGIDFM 120
           G     +  QR  N + +NEMP + +LEVE+FDVWGI FM
Sbjct: 51  GFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90

The following BLAST results are available for this feature:

BLAST of Clc06G10720 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833161.1	3.0e-148	77.33	DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]	[more]
PIM97577.1	8.3e-130	56.05	DNA-directed DNA polymerase [Handroanthus impetiginosus]	[more]
PIN14790.1	3.5e-128	55.81	DNA-directed DNA polymerase [Handroanthus impetiginosus]	[more]
PNY03357.1	6.6e-127	55.06	hypothetical protein L195_g026684, partial [Trifolium pratense]	[more]
PIN00904.1	4.3e-126	54.86	DNA-directed DNA polymerase [Handroanthus impetiginosus]	[more]

BLAST of Clc06G10720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26810	8.1e-19	29.34	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol...	[more]
P26808	8.1e-19	29.34	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 G...	[more]
P08361	1.1e-18	35.37	Gag-Pol polyprotein OS=Cas-Br-E murine leukemia virus OX=11792 GN=gag-pol PE=3 S...	[more]
P26809	1.1e-18	28.93	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=p...	[more]
P31792	1.8e-18	36.73	Pol polyprotein (Fragment) OS=Feline endogenous virus ECE1 OX=11766 GN=pol PE=3 ...	[more]

BLAST of Clc06G10720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G9FWY3	4.0e-130	56.05	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=...	[more]
A0A2G9HBV9	1.7e-128	55.81	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_125...	[more]
A0A2K3NJZ5	3.2e-127	55.06	Integrase catalytic domain-containing protein (Fragment) OS=Trifolium pratense O...	[more]
A0A2G9G6G2	2.1e-126	54.86	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26592 PE=...	[more]
A0A4Y1RSJ3	6.0e-126	54.10	Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_018513 PE=4 SV=1	[more]

BLAST of Clc06G10720 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00750.1	4.4e-04	50.00	GAG/POL/ENV polyprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 107..298 e-value: 1.4E-50 score: 173.3
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 112..205 e-value: 3.6E-12 score: 46.5
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 97..264 score: 22.802307
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 86..268
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 86..268
None	No IPR available	PANTHER	PTHR24559:SF373	REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED	coord: 3..84
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 3..84
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 110..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10720.1	Clc06G10720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity