Clc06G10670 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10670
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ty3/gypsy retrotransposon protein
Location	ClcChr06: 18365547 .. 18370755 (+)
RNA-Seq Expression	Clc06G10670
Synteny	Clc06G10670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGCTGCTCGCCTGGAAAGAATTCTGCAAGGTAAATGCCTTGATATAATATTGGCATGCATATACTGCATTGCATTTCAGCACACATGCACATTAGAGTTTTAGCCTTTATTGCTATGGTGATGGTTTGTTTTGAGTTTCAATTTGATCTTGTTAGGTGGATTATCGATTATGAAACTCCCACTAGTCAAGACTTGTGTTAGGAGGTAAAAATGGAAATTAACTACTTTTTATATTTTGTATTTATAGGGGGATGTTGGGTGATGGGGGTTAACTTTTGGTTAGTTAGACTGTTAGTTCTAGGCTAGAGAGACATCCACTCTCTCGAACTAGTGTTGAAGGCTTGCATTATCATATTTTGTGATCAATATTATAAACCCCCTGATTGGTATCCTTACAATTGGTATTAGAGTGGTAATTTTGGGAATTTTAGCACTTGAGAATGGAAACCGTGAAGGCTGAGTTATAGAAAACACCAGCCTTAAGAGAAGTCATTGGCGGATATGTTGAAGAATACGAAATGGATCACCCTAAGAATAGAAGATTGGCGACAGATAATAGAGGACAATCAAAAAGCAATAGTGGGCCTGCTATTTGATTATGTTAAGTTGTCTCGAAGCTGATCACAAAATAAAGAGATGAGAGAAACAAAGGAAAGGGAACTGCTGACGAAAAGAATGGTGTCAGAAAAGGACTAAAGGCTCGACGAGCGGGGTGGTGCGACCCTGTTGAGAAGCGAGCGACCTAAATTCAAGAAAGTGGAAATGCTTGTATTCTTAGTTGTGGATCTAGACTTGTGCTTATATAGCACAAAATGATATTTTGAGATACATGATTTAACCGATGATGAAAAAATGATGGTGTCTGTCATCAGTTTTGAAGGAGAAGCTATAGACTGATATCATTGGGTGATCAGAAGAGATCTGTTTGAGGATTAGGGTGCCCTCCAGCGATGATTGTTGGCGTGTTTCTTCCCATCCTATGAAGGCAATTTGTGTGCTTGATTTTTAACCATACGACAAGAGGGATCATTTAAGATTTTTAGCGCAAATTTGAAAGATTAGTAGCACCCATACCTCATTTGTCAGATGAAGTTTTGGAAAGCACGTTTCTTAATAGATTATACTCGATAATTTGGGTGGAAATACTATGTTTTGAGCCTTTGGGCCTTGATCAACCGATGAAGACAACCTAATTGGTGGAAGATTGCAACCTAATGGCCTAAAAAAGAGATGGACTTGAAGAGAAACATCTCTCAAAGGTTAACAAGCCCAATGGGCTAATTTCAAATTTAGGGAAAACCTTCCATGCCCTACTAATGCTAGCGCCATTGAAACCGTCACATTGAAAGGACAGACGCAAACCCCCATGAAGGTCACTTACAATTGCTTCATTGATGCTGAACTACAATCAATAAGAGAAAGGCATTTGCTTTCGGTGCGAGGAAAAGTCATCTTCTTTCCTTTTTTGATTACCTTCCTTGGCCATCTCTGTAAAAGCAAGGTACTGAGAGTTATGGTGGTTCACGAAGATGAAAAGAGTGAAGAGATGAAGTGGGAAGGTGAAACCATTGAAAATGAGATGATTGAAGTAGGGGAAGTGGTCGAACTATCGTTAAATACGGTAGTGGGGAACCCTGGAACTATGAGGAAAGATAGGTGATGAAGAGGGGGCTGTCTTGGTAGTTGTGGTGCTGTGTACAAATTTATCTCATTGGGTTGATGGAGAAGCACAAACTGTCGGTGCATGAAACAACTCATTATGGGGATAGGGAATGCCATGAAAGGACGCAAAATTGGTAAAGATGTCGTGGTTAATTTATCAAAAATTACGGTGGCAAAAGACTTTCTTCCCCTAGAAACATTGATGTTAGCTTGGGCATGCATTGGCTTAAAATGTTAGGAACTATTGAAGTTGACTGTAAGGCATTGACACTGAAGTTTGGGAAGGGAAAGAATCATGTGATTCTCTTGTGGGGATTCGTCATAGACTAAGAAAGAAATTTGTCTCTAAAGGCTATTGAAACAATGGCAAACCCGTGACCAAGGCTTCCTGGTAGAAATAAGAGCCCAGTGTTAGCAAACAAATCGCTTGAGATTGATTTTTGTGCCCCCGAACCCGATTCGAGTTGACATTGAAAAATTGATTACAAAATATGAGCATGTGTTTAGACAACCCATTGGACTACCACTCGGCGCAAGACAGACCATTGAATCCAATTGAAGGAACGCTAATCGCTGGTTAATGTGGGACCTTATCAATACCCCTATGTTTAGAAAGTTGAGATTGAAAAGATGATCGATGTTAGTTCATAAAAGTCATAATCTAGCCTACTACTAGCTCGTGCTCTAGTTCGGTATTACTGGTCAAGAAGAAATATGGAAGTCGAGACTTCTGTGTCGATTACCATGCCCTAAATAGTGTGACTATGCCAGACAAATTCCTAGTTTTGGTCATTGGAGAACCCTTGGATGAATTACAAGGGTGTGTAGTCAAAGTTAGATTTATGTTTGGGATACCATCAAATCATAATGGAGACCACTTTTCACATGCACGAGGGACATTATTAATTTTTGGTAATGTCATTCAGCTTGACCAATGCCCCATCTACTTTTCAGGCATTGATGAACCTAGTATTCCGCTCTTTCCTCAAACACTTTGTTTTAGTATTCTTTGATGATATACTTGTGTACAGTCTGGATTAAGACTCCTACCATGGCCACTTGTCGGTGTTATTTAATATTTTACGTGAGAGTGCTTTAGTGGTGAACCTTAAGAATTGCAACTTTGTGCAAGAATGCATCAGTTATTTGGTTGGGTCATTGGGTCTCAACAGTGGGGGTGGAAGTTGACCTAGAGAAGATAAGAGTTATGATTGAGTGACCAAGACCGACAAGTGCCAAAGAACTGCAAGGTTGTTTGGTCTCACAAGATATTCTTGGGGTCTTGTTGCCAACGTTGGTACCTTTGTTGCTTTGTTATCACAATTATTGATGTACAAACACTGATACGCGACACGAATACGACACGACACCCCAAGAATACGACATAACACCCGAAGAAGTGCAACTTTGTACATACAATATTGAAGCACAGACACTGTCATGCAACATGAACATGACTCGACACCGACACGGCGACACGTTAATTTCCAAAAAAGTAGGACACGACACGTTTGGACACATTATATTTATTCTTTACAATAATAAATATGTTATGCACATGTTTATTGTAATTAAGTAGTTTAACACAACAAAACTACAAAATAGAATCAAACAAACCTTTACATATATTAAATAAACAAGCCTTCTTTTTGTCTTCTAATTTTAAATAAAAAATGTAAAGAAAAAGAAAGAAAGATTTTAGAAAAGGAAAAAAAAACTAGAGAATAAGAAAAAGAAATAAAAAACAGAAATAGATCTATTACCAACATTTATTGCCATCACTACTACACGCCAACATTTTTTGCCCACACCAAACCATTTACCAAAACTGTCCTCTTTGTACTTTATTTCTGAAAACTTCCAGCCTCCTTCTGACCTTTCCCATCCTATTCCATTGGCTGTCACATCAAAAGCCCCCTTTTGCAAAAAATCTATTTACTTAACATAAGAGAGATGGGCTAGGCTTGGGCTTTAAATGTTCGATTTTATTGTTTCTTTTTTCTTTTCAAAATATTCCAGCTTGCCGTGTCCTGGAGGTGTCTCTAGTTATGTCCCGCCATGTCTCACTGTGTTGGAAACAGAAAATTTATTAATAAAACATTTGACCTGTTAGCTGGCGTTTTGGACATGTGTCGAGGGCGTTTCGGGGCGTGTTGGTGTCAGGTATGTGCCTGACACCGACACTTGGCCATTTTAGGAGTGTCCGTGCTTTGTAGTCGAGAATAAGGTGGCTAATGGACTATCAAGTATGCCTCTACCATTCCTTCACAACCTTGAACATCTTGGATGTAGAGGTGGTGTGACAAAATGTGCAAGATGATCCCAAGCTCTGACAAATTATCAAGGACTTTCAGAAGGATGAGCAAAGTCGCCTTTACAAAGATCGATTGGTGTTATTAGAAACCTCTTCCTTGATCCACACAGTGTTGCTTACTTACCCCGATTTGGTCGTCGACAGGCACTCAGAATTTCTACATACGTATAAACGACTCATGGGTGAATTGTATTGGCCAAGTATGAAATCGACAGTCCAATAATATGGGAAGCTTGTCAGGTTTGTCAATGAAATAAGACGGATGCAGTTTCTTGTGGGATTATTACAACTGCTACTTGTTCTATATTGAATTTAGGAGGATAGTTTGATGGATTTTGTCAAAGATTTATCTTGTTCAATGGGAAATGGTACCATTTTTGTCGTGGTGGATTGACTAAGGAAGTATCCCCCGAGTCATCCATTTTCGGCTAAATCAATAGCAATTCTGTTTGCGAAAGAGGTGGTTAGACTCCACGAGTTTCCTCAACCAGTTGTCTTAGATCGAAATAAAGTTTTCATTAGCCATGTTGGATTGAGGTTGCCTGGGGCAGAGTTCTGGTACGATACTTCCTTTCATAATTCCCTTGAAACCACCCCATTCCACGCTGTGTACCGATGTGCTCCATCGCCCCTATTGTCTTATGGTGATCTTAAAACTGCCAATGCAATGTTGGACCAACTAACAAATTGTAATGAGGCCCTCGAAGCCTTGAAGGAACAGTTGCGATTAGCTCAGGAACAAATGAATAAGTTTACAGACCGTCATCATTGTGAGGTGGAATTTGATGTGGGTAATTTATCTCAAATTAAGGCTCTATCGACAACGATCTCTAGCCCAAAAGAGCAAAGAAAAACTCTTTCCTGAGTGCTTTGGGCCCTATGGAGCACTAAAACAGTTTGGACAAGTTGCCTATAAGTTGGAACAGCCAGCCCAATCGACAATTCATCCTATTTTTCACGTGTCCCAGTTGAGGCGTGTCGTTGGGCCAAAGTTGCAGTAGAGCCCAACCCACTCATGTTGACCTAATTGTTTGAATGGAACGAATAATTGGACAATGTTTGGGCCACTCAAAAAAATGAAATGACTAGGAAGCCAAAGCTGCTAATTGGCTGGAAAGGATTACCAAAGCATGAAGCGATGTGGGAAACAATGGAAACCATGCAACAAAAATTTCACGAGTCCCACCTCGAGGACAAGGTGGCTGTCACCGCTGGGTGTAGTGTTTAG

mRNA sequence

ATGCAGGCTGCTCGCCTGGAAAGAATTCTGCAAGGTGGATTATCGATTATGAAACTCCCACTAGTCAAGACTTGTGTTAGGAGGGAAAACCTTCCATGCCCTACTAATGCTAGCGCCATTGAAACCGTCACATTGAAAGGACAGACGCAAACCCCCATGAAGGTCACTTACAATTGCTTCATTGATGCTGAACTACAATCAATAAGAGAAAGGCATTTGCTTTCGGTGCGAGGAAAAGTCATCTTCTTTCCTTTTTTGATTACCTTCCTTGGCCATCTCTGTAAAAGCAAGGTACTGAGAGTTATGGTGGTTCACGAAGATGAAAAGAGTGAAGAGATGAAGTGGGAAGGTGAAACCATTGAAAATGAGATGATTGAAGTAGGGGAAGTGGTCGAACTATCGTTAAATACGGTAGTGGGGAACCCTGGAACTATGAGGAAAGATAGAAAATTTATTAATAAAACATTTGACCTGTTAGCTGGCGTTTTGGACATGTGTCGAGGGCGTTTCGGGGCGTGTTGGTGTCAGGACTTTCAGAAGGATGAGCAAAGTCGCCTTTACAAAGATCGATTGGTGTTATTAGAAACCTCTTCCTTGATCCACACAGTGTTGCTTACTTACCCCGATTTGGTCGTCGACAGGCACTCAGAATTTCTACATACGTATAAACGACTCATGGGTGAATTGTATTGGCCAAAGGTGGTTAGACTCCACGAGTTTCCTCAACCAGTTGTCTTAGATCGAAATAAAGTTTTCATTAGCCATGTTGGATTGAGGTTGCCTGGGGCAGAGTTCTGGTACGATACTTCCTTTCATAATTCCCTTGAAACCACCCCATTCCACGCTGTGTACCGATGTGCTCCATCGCCCCTATTGTCTTATGGTGATCTTAAAACTGCCAATGCAATGTTGGACCAACTAACAAATTGTAATGAGGCCCTCGAAGCCTTGAAGGAACAGTTGCGATTAGCTCAGGAACAAATGAATAAGTTTACAGACCGTCATCATTGTGAGGTGGAATTTGATGTGGGATTACCAAAGCATGAAGCGATGTGGGAAACAATGGAAACCATGCAACAAAAATTTCACGAGTCCCACCTCGAGGACAAGGTGGCTGTCACCGCTGGGTGTAGTGTTTAG

Coding sequence (CDS)

ATGCAGGCTGCTCGCCTGGAAAGAATTCTGCAAGGTGGATTATCGATTATGAAACTCCCACTAGTCAAGACTTGTGTTAGGAGGGAAAACCTTCCATGCCCTACTAATGCTAGCGCCATTGAAACCGTCACATTGAAAGGACAGACGCAAACCCCCATGAAGGTCACTTACAATTGCTTCATTGATGCTGAACTACAATCAATAAGAGAAAGGCATTTGCTTTCGGTGCGAGGAAAAGTCATCTTCTTTCCTTTTTTGATTACCTTCCTTGGCCATCTCTGTAAAAGCAAGGTACTGAGAGTTATGGTGGTTCACGAAGATGAAAAGAGTGAAGAGATGAAGTGGGAAGGTGAAACCATTGAAAATGAGATGATTGAAGTAGGGGAAGTGGTCGAACTATCGTTAAATACGGTAGTGGGGAACCCTGGAACTATGAGGAAAGATAGAAAATTTATTAATAAAACATTTGACCTGTTAGCTGGCGTTTTGGACATGTGTCGAGGGCGTTTCGGGGCGTGTTGGTGTCAGGACTTTCAGAAGGATGAGCAAAGTCGCCTTTACAAAGATCGATTGGTGTTATTAGAAACCTCTTCCTTGATCCACACAGTGTTGCTTACTTACCCCGATTTGGTCGTCGACAGGCACTCAGAATTTCTACATACGTATAAACGACTCATGGGTGAATTGTATTGGCCAAAGGTGGTTAGACTCCACGAGTTTCCTCAACCAGTTGTCTTAGATCGAAATAAAGTTTTCATTAGCCATGTTGGATTGAGGTTGCCTGGGGCAGAGTTCTGGTACGATACTTCCTTTCATAATTCCCTTGAAACCACCCCATTCCACGCTGTGTACCGATGTGCTCCATCGCCCCTATTGTCTTATGGTGATCTTAAAACTGCCAATGCAATGTTGGACCAACTAACAAATTGTAATGAGGCCCTCGAAGCCTTGAAGGAACAGTTGCGATTAGCTCAGGAACAAATGAATAAGTTTACAGACCGTCATCATTGTGAGGTGGAATTTGATGTGGGATTACCAAAGCATGAAGCGATGTGGGAAACAATGGAAACCATGCAACAAAAATTTCACGAGTCCCACCTCGAGGACAAGGTGGCTGTCACCGCTGGGTGTAGTGTTTAG

Protein sequence

MQAARLERILQGGLSIMKLPLVKTCVRRENLPCPTNASAIETVTLKGQTQTPMKVTYNCFIDAELQSIRERHLLSVRGKVIFFPFLITFLGHLCKSKVLRVMVVHEDEKSEEMKWEGETIENEMIEVGEVVELSLNTVVGNPGTMRKDRKFINKTFDLLAGVLDMCRGRFGACWCQDFQKDEQSRLYKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVGLRLPGAEFWYDTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLDQLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDVGLPKHEAMWETMETMQQKFHESHLEDKVAVTAGCSV

Homology

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BLAST of Clc06G10670 vs. NCBI nr
Match: XP_038895982.1 (uncharacterized protein LOC120084159 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 6.5e-26
Identity = 117/404 (28.96%), Postives = 172/404 (42.57%), Query Frame = 0


Query: 61  IDAELQSIRERHLLSVRGKVIFFPFLITFLGHLCKSKVLRVMVVHEDEKSEEM-KWEGET 120
           ++  L  +RE  L + R K  F    + +LGH+   + + V    + EK   + +W+   
Sbjct: 51  LEVVLSVLRENELDANRKKCRFAKDGVEYLGHIISKQGVEV----DPEKVRAVQRWQPYL 110

Query: 121 IENEMI--------EVGE-----VVELSLNTVVGNPGTMRKDRKFINKTFDLLAGVLDMC 180
           +E   +        ++GE     VV       VG       DR   N   +     +   
Sbjct: 111 LERRFVIKIDPKALKIGEWSRGCVVHSGFGDSVGLVVGSYYDRYGYNSEGNRAGSSVTTN 170

Query: 181 RGRFGACW-----CQDFQKDEQSRLYKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHT 240
           +   G C       QDF        +K RLVL  TSSLI T++ TY D +   HS FL T
Sbjct: 171 Q---GLCTTKEDEVQDFSLHRGVLKHKGRLVLSSTSSLIPTIMHTYHDSIFGGHSRFLRT 230

Query: 241 YKRLMGELYWPKVVR-LHEFPQP------------VVLDRNKVFISHVGLRLP------- 300
           YK + GELYW  + R + E+ +             VV+DR   +   + L+ P       
Sbjct: 231 YKIVSGELYWEGMKRAVKEYVEEGLPKAKGYDVILVVVDRLSKYAHFLALKHPLNACVVA 290

Query: 301 ------------------------------GAEFWYDTSFHNSLETTPFHAVYRCAPSPL 360
                                          AE+WY+T+++ S   +PF  VY   P  L
Sbjct: 291 DVFGYQASSQHSISSLFGWERPKEWIIWLHWAEYWYNTTYNVSTSFSPFQIVYGRLPPVL 350

Query: 361 LSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQEQMNKFTDRHHCEVEFDV------- 377
           + YGD  T+NA LD Q+ + + AL  LKE LR+AQE+M KF+D+   +VEF +       
Sbjct: 351 IYYGDDCTSNATLDRQMRDRDVALRVLKEHLRVAQEKMKKFSDKKRMDVEFQIREWPQLS 410

[Close]

BLAST of Clc06G10670 vs. NCBI nr
Match: KAA0034981.1 (Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa] >TYK02323.1 Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-22
Identity = 99/354 (27.97%), Postives = 133/354 (37.57%), Query Frame = 0


Query: 187 YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYW--------------- 246
           YKDRLV+ +TS+L+ T+L T  DLV   HS FL TYKRL GELYW               
Sbjct: 377 YKDRLVISKTSTLLPTILHTNHDLVFGGHSGFLRTYKRLAGELYWEGIKQDVKRYCEQCL 436

Query: 247 -------------------------------------PK--------------------- 306
                                                PK                     
Sbjct: 437 ICQKNKSLALSPARLLLPLEVPNSVWSDISMDFIEGLPKSNGFETNFVVVDRFSKYGHFL 496

Query: 307 ------------------VVRLHEFPQPVVLDRNKVFISH-------------------- 366
                             +VRLH +P+ +V DR+K+F+SH                    
Sbjct: 497 MMKHPYTAKSVADLFTKEIVRLHGYPKSIVSDRDKIFLSHFWKELFKMAGTKLHRSTAYH 556

Query: 367 ---------------------VGLR-------LPGAEFWYDTSFHNSLETTPFHAVYRCA 379
                                 G R       L  AE+WY+T+F  SL  TPF AVY   
Sbjct: 557 PQSDGQTEVVNRGIETYLRCFCGERPKEWVKWLHWAEYWYNTTFQRSLGITPFQAVYGRL 616

[Close]

BLAST of Clc06G10670 vs. NCBI nr
Match: TYJ98385.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 5.7e-22
Identity = 100/360 (27.78%), Postives = 131/360 (36.39%), Query Frame = 0


Query: 187  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWP-------------- 246
            YKDRLVL ++SSLI  +L TY D VV  HS FL TYKRL  ELYWP              
Sbjct: 704  YKDRLVLSKSSSLIPAILSTYHDSVVGGHSGFLRTYKRLASELYWPSMKTDVKKYCEECI 763

Query: 247  ------------------------------------------------------------ 306
                                                                        
Sbjct: 764  VCQRNKTMALSPAGLLTPLEVPLQVWNDISMDFIDALPEAKGFEVVFVVVDRLSKYNHFI 823

Query: 307  -----------------KVVRLHEFPQPVVLDRNKVFISHVG---LRLPG---------- 366
                             +VVRLH FP  +V DR+K+F+S+      RL G          
Sbjct: 824  PLKHPYTAKSVADVFVKEVVRLHGFPASIVSDRDKIFLSNFWKEMFRLAGTKLNRSTAYH 883

Query: 367  -----------------------------------AEFWYDTSFHNSLETTPFHAVYRCA 371
                                               AE+WY+T+++ SL T+PF  +Y   
Sbjct: 884  PQSDGQTEVVNCGLETYLRCFCSERPKEWVSWLSWAEYWYNTTYNRSLGTSPFQVLYGRK 943

[Close]

BLAST of Clc06G10670 vs. NCBI nr
Match: KAA0033067.1 (transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK03481.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 5.7e-22
Identity = 98/316 (31.01%), Postives = 129/316 (40.82%), Query Frame = 0


Query: 187 YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKV---VRLH----- 246
           YK+RLVL +TSSLI  +L  + D VV  HS FL TYKRL  ELYW  +   V+ H     
Sbjct: 290 YKNRLVLSKTSSLILAMLHAFRDSVVGGHSGFLRTYKRLTAELYWEGMKSNVKKHCEECL 349

Query: 247 -------------------EFPQP-----------------------VVLDR-NKVFISH 306
                              E PQ                        VV+DR  K F+SH
Sbjct: 350 TCQRNKTLALSPAGLLVPLEVPQQVWSDISMDFVDGLPKARGFEVVLVVVDRLKKNFLSH 409

Query: 307 V-------------------------------GLR-----------------LPGAEFWY 366
           +                               GL                  LP AEFWY
Sbjct: 410 LWKEMFRLAGTKLNKSTAYHPQSDGQTEFINRGLETYLRCFYSERPKEWVSWLPWAEFWY 469

Query: 367 DTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQE 380
           +T+F  +L  +PF   Y   P PLLSYG+  T+N+ LD QL   +  L AL+E L LAQ+
Sbjct: 470 NTTFQRALGVSPFQVFYGRKPPPLLSYGEGDTSNSTLDEQLRERDIVLAALREHLILAQQ 529

[Close]

BLAST of Clc06G10670 vs. NCBI nr
Match: KAA0042076.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 7.4e-22
Identity = 83/248 (33.47%), Postives = 112/248 (45.16%), Query Frame = 0


Query: 210 LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LR 269
           +VV+R S++ H  T K     + + EL+  +VVRLH FPQ +VLDR+K+F+SH      R
Sbjct: 669 VVVNRFSKYGHFLTLKHPFDAKTVTELFVKEVVRLHGFPQSIVLDRDKIFLSHFWKELFR 728

Query: 270 LPG---------------------------------------------AEFWYDTSFHNS 329
           L G                                             AE+WY+T++  +
Sbjct: 729 LAGTKLNRNTAYHPQTDGQTVVVNRSVEAYLRCFCGERPKKWNKWIHLAEYWYNTTYQRA 788

Query: 330 LETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTD 372
           L  +PF AVY   PSPL+ YGDL T N+ L DQL   +  L ALKE LR+AQE+M  + D
Sbjct: 789 LGVSPFQAVYGRTPSPLVFYGDLSTTNSTLNDQLRQRDIVLGALKEHLRVAQEKMKTYAD 848

[Close]

BLAST of Clc06G10670 vs. ExPASy TrEMBL
Match: A0A5D3BRN6 (Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00100 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.5e-23
Identity = 99/354 (27.97%), Postives = 133/354 (37.57%), Query Frame = 0


Query: 187 YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYW--------------- 246
           YKDRLV+ +TS+L+ T+L T  DLV   HS FL TYKRL GELYW               
Sbjct: 377 YKDRLVISKTSTLLPTILHTNHDLVFGGHSGFLRTYKRLAGELYWEGIKQDVKRYCEQCL 436

Query: 247 -------------------------------------PK--------------------- 306
                                                PK                     
Sbjct: 437 ICQKNKSLALSPARLLLPLEVPNSVWSDISMDFIEGLPKSNGFETNFVVVDRFSKYGHFL 496

Query: 307 ------------------VVRLHEFPQPVVLDRNKVFISH-------------------- 366
                             +VRLH +P+ +V DR+K+F+SH                    
Sbjct: 497 MMKHPYTAKSVADLFTKEIVRLHGYPKSIVSDRDKIFLSHFWKELFKMAGTKLHRSTAYH 556

Query: 367 ---------------------VGLR-------LPGAEFWYDTSFHNSLETTPFHAVYRCA 379
                                 G R       L  AE+WY+T+F  SL  TPF AVY   
Sbjct: 557 PQSDGQTEVVNRGIETYLRCFCGERPKEWVKWLHWAEYWYNTTFQRSLGITPFQAVYGRL 616

[Close]

BLAST of Clc06G10670 vs. ExPASy TrEMBL
Match: A0A5A7SUR4 (Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00960 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-22
Identity = 98/316 (31.01%), Postives = 129/316 (40.82%), Query Frame = 0


Query: 187 YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWPKV---VRLH----- 246
           YK+RLVL +TSSLI  +L  + D VV  HS FL TYKRL  ELYW  +   V+ H     
Sbjct: 290 YKNRLVLSKTSSLILAMLHAFRDSVVGGHSGFLRTYKRLTAELYWEGMKSNVKKHCEECL 349

Query: 247 -------------------EFPQP-----------------------VVLDR-NKVFISH 306
                              E PQ                        VV+DR  K F+SH
Sbjct: 350 TCQRNKTLALSPAGLLVPLEVPQQVWSDISMDFVDGLPKARGFEVVLVVVDRLKKNFLSH 409

Query: 307 V-------------------------------GLR-----------------LPGAEFWY 366
           +                               GL                  LP AEFWY
Sbjct: 410 LWKEMFRLAGTKLNKSTAYHPQSDGQTEFINRGLETYLRCFYSERPKEWVSWLPWAEFWY 469

Query: 367 DTSFHNSLETTPFHAVYRCAPSPLLSYGDLKTANAMLD-QLTNCNEALEALKEQLRLAQE 380
           +T+F  +L  +PF   Y   P PLLSYG+  T+N+ LD QL   +  L AL+E L LAQ+
Sbjct: 470 NTTFQRALGVSPFQVFYGRKPPPLLSYGEGDTSNSTLDEQLRERDIVLAALREHLILAQQ 529

[Close]

BLAST of Clc06G10670 vs. ExPASy TrEMBL
Match: A0A5D3BJ44 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001280 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.8e-22
Identity = 100/360 (27.78%), Postives = 131/360 (36.39%), Query Frame = 0


Query: 187  YKDRLVLLETSSLIHTVLLTYPDLVVDRHSEFLHTYKRLMGELYWP-------------- 246
            YKDRLVL ++SSLI  +L TY D VV  HS FL TYKRL  ELYWP              
Sbjct: 704  YKDRLVLSKSSSLIPAILSTYHDSVVGGHSGFLRTYKRLASELYWPSMKTDVKKYCEECI 763

Query: 247  ------------------------------------------------------------ 306
                                                                        
Sbjct: 764  VCQRNKTMALSPAGLLTPLEVPLQVWNDISMDFIDALPEAKGFEVVFVVVDRLSKYNHFI 823

Query: 307  -----------------KVVRLHEFPQPVVLDRNKVFISHVG---LRLPG---------- 366
                             +VVRLH FP  +V DR+K+F+S+      RL G          
Sbjct: 824  PLKHPYTAKSVADVFVKEVVRLHGFPASIVSDRDKIFLSNFWKEMFRLAGTKLNRSTAYH 883

Query: 367  -----------------------------------AEFWYDTSFHNSLETTPFHAVYRCA 371
                                               AE+WY+T+++ SL T+PF  +Y   
Sbjct: 884  PQSDGQTEVVNCGLETYLRCFCSERPKEWVSWLSWAEYWYNTTYNRSLGTSPFQVLYGRK 943

[Close]

BLAST of Clc06G10670 vs. ExPASy TrEMBL
Match: A0A5D3D331 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003350 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-22
Identity = 83/248 (33.47%), Postives = 112/248 (45.16%), Query Frame = 0


Query: 210 LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LR 269
           +VV+R S++ H  T K     + + EL+  +VVRLH FPQ +VLDR+K+F+SH      R
Sbjct: 669 VVVNRFSKYGHFLTLKHPFDAKTVTELFVKEVVRLHGFPQSIVLDRDKIFLSHFWKELFR 728

Query: 270 LPG---------------------------------------------AEFWYDTSFHNS 329
           L G                                             AE+WY+T++  +
Sbjct: 729 LAGTKLNRNTAYHPQTDGQTVVVNRSVEAYLRCFCGERPKKWNKWIHLAEYWYNTTYQRA 788

Query: 330 LETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTD 372
           L  +PF AVY   PSPL+ YGDL T N+ L DQL   +  L ALKE LR+AQE+M  + D
Sbjct: 789 LGVSPFQAVYGRTPSPLVFYGDLSTTNSTLNDQLRQRDIVLGALKEHLRVAQEKMKTYAD 848

[Close]

BLAST of Clc06G10670 vs. ExPASy TrEMBL
Match: A0A5A7TJB8 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005420 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-22
Identity = 83/248 (33.47%), Postives = 112/248 (45.16%), Query Frame = 0


Query: 210 LVVDRHSEFLH--TYK-----RLMGELYWPKVVRLHEFPQPVVLDRNKVFISHVG---LR 269
           +VV+R S++ H  T K     + + EL+  +VVRLH FPQ +VLDR+K+F+SH      R
Sbjct: 669 VVVNRFSKYGHFLTLKHPFDAKTVTELFVKEVVRLHGFPQSIVLDRDKIFLSHFWKELFR 728

Query: 270 LPG---------------------------------------------AEFWYDTSFHNS 329
           L G                                             AE+WY+T++  +
Sbjct: 729 LAGTKLNRNTAYHPQTDGQTVVVNRSVEAYLRCFCGERPKKWNKWIHLAEYWYNTTYQRA 788

Query: 330 LETTPFHAVYRCAPSPLLSYGDLKTANAML-DQLTNCNEALEALKEQLRLAQEQMNKFTD 372
           L  +PF AVY   PSPL+ YGDL T N+ L DQL   +  L ALKE LR+AQE+M  + D
Sbjct: 789 LGVSPFQAVYGRTPSPLVFYGDLSTTNSTLNDQLRQRDIVLGALKEHLRVAQEKMKTYAD 848

The following BLAST results are available for this feature:

BLAST of Clc06G10670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895982.1	6.5e-26	28.96	uncharacterized protein LOC120084159 [Benincasa hispida]	[more]
KAA0034981.1	2.0e-22	27.97	Transposon Tf2-9 polyprotein [Cucumis melo var. makuwa] >TYK02323.1 Transposon T...	[more]
TYJ98385.1	5.7e-22	27.78	retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]	[more]
KAA0033067.1	5.7e-22	31.01	transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa] >TYK03481.1 t...	[more]
KAA0042076.1	7.4e-22	33.47	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Clc06G10670 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G10670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BRN6	9.5e-23	27.97	Transposon Tf2-9 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7SUR4	2.8e-22	31.01	Transposon Tf2-1 polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3BJ44	2.8e-22	27.78	Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3D331	3.6e-22	33.47	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TJB8	3.6e-22	33.47	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Clc06G10670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 297..334

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10670.1	Clc06G10670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding