Clc06G10550 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10550
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	60S acidic ribosomal protein P1-like
Location	ClcChr06: 15962491 .. 15962820 (-)
RNA-Seq Expression	Clc06G10550
Synteny	Clc06G10550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTGGAGAAGTTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCTTATTACTGCAGAAAAGATTGCTGCGCTTGTAAAGGCAGCTAATGTGTACAGTGTGGAGTCTTACTAGTACAGTCTTTTTGCTAAGTTGGCCGAGAAGTGTAACATTGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCTGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG

mRNA sequence

ATGTCGGTTGGAGAAGTTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCTTATTACTGCAGAAAAGATTGCTGCGCTTTTGGCCGAGAAGTGTAACATTGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCTGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG

Coding sequence (CDS)

ATGTCGGTTGGAGAAGTTGCTTGCTCCTATGCTGCTCTCATCCTCTACGACGACAATATCCTTATTACTGCAGAAAAGATTGCTGCGCTTTTGGCCGAGAAGTGTAACATTGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCTGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG

Protein sequence

MSVGEVACSYAALILYDDNILITAEKIAALLAEKCNIGDLILNVGAGGGASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLFG

Homology

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BLAST of Clc06G10550 vs. NCBI nr
Match: XP_004133766.1 (60S acidic ribosomal protein P1 [Cucumis sativus] >KGN56349.1 hypothetical protein Csa_009966 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 5.3e-27
Identity = 80/112 (71.43%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLI 60
           MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK +IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGASV----PAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           LNVGAGGGA+V    PAGGAAGG AAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. NCBI nr
Match: XP_008437779.1 (PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa] >TYK20773.1 60S acidic ribosomal protein P1-like [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 6.9e-27
Identity = 80/112 (71.43%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLI 60
           MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK NIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           LNVGAGGG    A+VPAGGAA G AAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. NCBI nr
Match: XP_022144008.1 (60S acidic ribosomal protein P1-like [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 9.1e-27
Identity = 79/112 (70.54%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLI 60
           MS  E+ACSYAA+ILYDD I ITAEKIAAL                   LAEK NIGDLI
Sbjct: 1   MSTAEIACSYAAMILYDDGISITAEKIAALVKAANVSGVDSYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           +NVGAGGG    A+VPAGGAAGGAAAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  MNVGAGGGAAVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. NCBI nr
Match: XP_038883955.1 (60S acidic ribosomal protein P1-like [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 80/112 (71.43%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIA-------------------ALLAEKCNIGDLI 60
           MS GE+ACSYAALILYDDNI ITAEKIA                   A LAEK NIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATIVKAANVPDVESYWFGLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           LNVGAGGG    A+VPA G AGGAAAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  LNVGAGGGAAVAAAVPASGVAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. NCBI nr
Match: KAG6597015.1 (60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 2.6e-26
Identity = 79/111 (71.17%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLIL 60
           MSVGE+ACSYAALILYDDNI +TAEK+A L                  LAEK NIGDLI+
Sbjct: 18  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIM 77

Query: 61  NVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           NVGAGGG    A+VPAGG AGGAAAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 78  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLF 127

[Close]

BLAST of Clc06G10550 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.5e-20
Identity = 66/108 (61.11%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIA------------------ALLAEKCNIGDLIL 60
           M+ GE+AC YAALIL DD I ITAEKIA                  A L EK N+ DLIL
Sbjct: 1   MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60

Query: 61  NVGAGGGAS-VPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           +VG+GGGA+ V A   AGGAAAAAAP  +EKKEE KEESDDDMGFSLF
Sbjct: 61  SVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLF 108

[Close]

BLAST of Clc06G10550 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-17
Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEESDDDMGFSLF 90
           VGAGGG   P   A  AAGG AAAAAP  +E KK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLF 112

[Close]

BLAST of Clc06G10550 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-16
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           VGAGGG   P   A  AAGG AAAA    ++KK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111

[Close]

BLAST of Clc06G10550 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 5.7e-16
Identity = 56/110 (50.91%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I IT++KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGAS----VPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           VGAGGG        A  AA G AAAAAP  +EKK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLF 112

[Close]

BLAST of Clc06G10550 vs. ExPASy Swiss-Prot
Match: P50344 (60S acidic ribosomal protein P1 OS=Davidiella tassiana OX=29918 GN=CLAH12 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-15
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAALLA-------------------EKCNIGDLI 60
           MS  E+A SYAALIL D+ + ITA+K+ AL++                   E  ++ DL+
Sbjct: 1   MSAAELASSYAALILADEGLEITADKLQALISAAKVPEIEPIWTSLFAKALEGKDVKDLL 60

Query: 61  LNVGAGGGASVPAGG-AAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           LNVG+GGGA+  AGG AAGGAAA    P +EK EE KEESDDDMGF LF
Sbjct: 61  LNVGSGGGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKEESDDDMGFGLF 109

[Close]

BLAST of Clc06G10550 vs. ExPASy TrEMBL
Match: A0A0A0L5M7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.6e-27
Identity = 80/112 (71.43%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLI 60
           MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK +IGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAAKVSDVESYWYGLFAKLAEKRSIGDLI 60

Query: 61  LNVGAGGGASV----PAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           LNVGAGGGA+V    PAGGAAGG AAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  LNVGAGGGAAVAAAAPAGGAAGGGAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. ExPASy TrEMBL
Match: A0A5D3DB57 (60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00330 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27
Identity = 80/112 (71.43%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLI 60
           MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK NIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           LNVGAGGG    A+VPAGGAA G AAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. ExPASy TrEMBL
Match: A0A1S3AUG9 (60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.4e-27
Identity = 80/112 (71.43%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLI 60
           MS GE+ACSYAALILYDDNI ITAEKIA L                   LAEK NIGDLI
Sbjct: 1   MSTGEIACSYAALILYDDNIPITAEKIATLVKAANVSDVESYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           LNVGAGGG    A+VPAGGAA G AAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  LNVGAGGGAAVAAAVPAGGAAAGGAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. ExPASy TrEMBL
Match: A0A6J1CS45 (60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111013791 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.4e-27
Identity = 79/112 (70.54%), Postives = 84/112 (75.00%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL-------------------LAEKCNIGDLI 60
           MS  E+ACSYAA+ILYDD I ITAEKIAAL                   LAEK NIGDLI
Sbjct: 1   MSTAEIACSYAAMILYDDGISITAEKIAALVKAANVSGVDSYWYSLFAKLAEKRNIGDLI 60

Query: 61  LNVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           +NVGAGGG    A+VPAGGAAGGAAAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  MNVGAGGGAAVAAAVPAGGAAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLF 112

[Close]

BLAST of Clc06G10550 vs. ExPASy TrEMBL
Match: A0A6J1ICK4 (60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 79/111 (71.17%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 1   MSVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLIL 60
           MSVGE+ACSYAALILYDDNI +TAEK+A L                  LAEK NIGDLI+
Sbjct: 1   MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVDAESYWFSLFAKLAEKRNIGDLIM 60

Query: 61  NVGAGGG----ASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           NVGAGGG    A+VPAGG AGGAAAAAAPPP+EKKEEPKEESDDDMGFSLF
Sbjct: 61  NVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPKEESDDDMGFSLF 110

[Close]

BLAST of Clc06G10550 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 87.8 bits (216), Expect = 4.8e-18
Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEESDDDMGFSLF 90
           VGAGGG   P   A  AAGG AAAAAP  +E KK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLF 112

[Close]

BLAST of Clc06G10550 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 87.8 bits (216), Expect = 4.8e-18
Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGASVP---AGGAAGGAAAAAAPPPKE-KKEEPKEESDDDMGFSLF 90
           VGAGGG   P   A  AAGG AAAAAP  +E KK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLF 112

[Close]

BLAST of Clc06G10550 vs. TAIR 10
Match: AT1G01100.1 (60S acidic ribosomal protein family )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           VGAGGG   P   A  AAGG AAAA    ++KK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111

[Close]

BLAST of Clc06G10550 vs. TAIR 10
Match: AT1G01100.2 (60S acidic ribosomal protein family )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           VGAGGG   P   A  AAGG AAAA    ++KK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111

[Close]

BLAST of Clc06G10550 vs. TAIR 10
Match: AT1G01100.4 (60S acidic ribosomal protein family )

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-17
Identity = 56/109 (51.38%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 2   SVGEVACSYAALILYDDNILITAEKIAAL------------------LAEKCNIGDLILN 61
           +VGE+ACSYA +IL D+ I ITA+KIA L                  +AEK N+ DLI+N
Sbjct: 3   TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62

Query: 62  VGAGGGASVP---AGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLF 90
           VGAGGG   P   A  AAGG AAAA    ++KK+EP EESD D+GF LF
Sbjct: 63  VGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111

The following BLAST results are available for this feature:

BLAST of Clc06G10550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133766.1	5.3e-27	71.43	60S acidic ribosomal protein P1 [Cucumis sativus] >KGN56349.1 hypothetical prote...	[more]
XP_008437779.1	6.9e-27	71.43	PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo] >KAA0048820.1 60S...	[more]
XP_022144008.1	9.1e-27	70.54	60S acidic ribosomal protein P1-like [Momordica charantia]	[more]
XP_038883955.1	1.2e-26	71.43	60S acidic ribosomal protein P1-like [Benincasa hispida]	[more]
KAG6597015.1	2.6e-26	71.17	60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc06G10550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52855	6.5e-20	61.11	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
Q8LEQ0	6.8e-17	53.64	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
Q8LCW9	2.6e-16	51.38	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
O23095	5.7e-16	50.91	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
P50344	3.7e-15	51.38	60S acidic ribosomal protein P1 OS=Davidiella tassiana OX=29918 GN=CLAH12 PE=1 S...	[more]

BLAST of Clc06G10550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M7	2.6e-27	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116860 PE=3 SV=1	[more]
A0A5D3DB57	3.4e-27	71.43	60S acidic ribosomal protein P1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AUG9	3.4e-27	71.43	60S acidic ribosomal protein P1-like OS=Cucumis melo OX=3656 GN=LOC103483111 PE=...	[more]
A0A6J1CS45	4.4e-27	70.54	60S acidic ribosomal protein P1-like OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1ICK4	1.3e-26	71.17	60S acidic ribosomal protein P1-like OS=Cucurbita maxima OX=3661 GN=LOC111474378...	[more]

BLAST of Clc06G10550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47700.1	4.8e-18	53.64	60S acidic ribosomal protein family	[more]
AT5G47700.2	4.8e-18	53.64	60S acidic ribosomal protein family	[more]
AT1G01100.1	1.8e-17	51.38	60S acidic ribosomal protein family	[more]
AT1G01100.2	1.8e-17	51.38	60S acidic ribosomal protein family	[more]
AT1G01100.4	1.8e-17	51.38	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 28..89 e-value: 1.8E-16 score: 60.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..90
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 29..89 coord: 1..31
None	No IPR available	PANTHER	PTHR45696:SF20	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 29..89 coord: 1..31
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..45 e-value: 1.9E-10 score: 42.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10550.1	Clc06G10550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome