Clc06G10535 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10535
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DUF4219 domain-containing protein
Location	ClcChr06: 15864305 .. 15864640 (+)
RNA-Seq Expression	Clc06G10535
Synteny	Clc06G10535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGACACCTTCAAATTGTTGGTGAAATCAAGAAGCTCAATACTCAAAACTACAAAACATGGTTCACATGCATGAAGTCGTATCTCCAAGGCCAAAACTTGTGGGGTGTTGCGGGAGGCATTAAGGTCAAGCCACCTGAAGATGTTATTGCTTTTAAGAAATGGAATATCAAGGAAGGTAAGGTCATGTTTGCAATTAGAATTATAATTGATGAAGAAATGTTGGAGCACATCAATATAGTGCAGATGCCAAAGATAGCATGGGCATGTTTGCCTCACTTTTCTCAAAGAAAAATGATGCGAGATTTTAGTTTCCGGAGAACAAGCTCCTAA

mRNA sequence

ATGATGGGACACCTTCAAATTGTTGGTGAAATCAAGAAGCTCAATACTCAAAACTACAAAACATGGTTCACATGCATGAAGTCGTATCTCCAAGGCCAAAACTTGTGGGGTGTTGCGGGAGGCATTAAGGTCAAGCCACCTGAAGATGTTATTGCTTTTAAGAAATGGAATATCAAGGAAGGTAAGGTCATGTTTGCAATTAGAATTATAATTGATGAAGAAATGTTGGAGCACATCAATATAGTGCAGATGCCAAAGATAGCATGGGCATGTTTGCCTCACTTTTCTCAAAGAAAAATGATGCGAGATTTTAGTTTCCGGAGAACAAGCTCCTAA

Coding sequence (CDS)

ATGATGGGACACCTTCAAATTGTTGGTGAAATCAAGAAGCTCAATACTCAAAACTACAAAACATGGTTCACATGCATGAAGTCGTATCTCCAAGGCCAAAACTTGTGGGGTGTTGCGGGAGGCATTAAGGTCAAGCCACCTGAAGATGTTATTGCTTTTAAGAAATGGAATATCAAGGAAGGTAAGGTCATGTTTGCAATTAGAATTATAATTGATGAAGAAATGTTGGAGCACATCAATATAGTGCAGATGCCAAAGATAGCATGGGCATGTTTGCCTCACTTTTCTCAAAGAAAAATGATGCGAGATTTTAGTTTCCGGAGAACAAGCTCCTAA

Protein sequence

MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKEGKVMFAIRIIIDEEMLEHINIVQMPKIAWACLPHFSQRKMMRDFSFRRTSS

Homology

[Close]

BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0037685.1 (uncharacterized protein E6C27_scaffold1593G00060 [Cucumis melo var. makuwa] >TYK10688.1 uncharacterized protein E5676_scaffold25G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+VG IKK NTQNYKTW TCMKSYLQGQ+LW V GG +V PPED  A KKWNIK 
Sbjct: 2  MMGDLQVVGGIKKFNTQNYKTWSTCMKSYLQGQDLWDVVGGTEVNPPEDAAALKKWNIKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPK 87
          GKVMFAI+  IDEEMLEHI+I++ PK
Sbjct: 62 GKVMFAIKTTIDEEMLEHISIMETPK 87

[Close]

BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0037350.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+ G IKKLNTQNYKTW TCMKSYLQGQ+LW V GG +V PPED    KKWNIK 
Sbjct: 2  MMGDLQVKG-IKKLNTQNYKTWSTCMKSYLQGQDLWDVVGGTEVNPPEDAATLKKWNIKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
          GK  FAI+  IDEEMLEHI+I++ PK  W
Sbjct: 62 GKATFAIKTTIDEEMLEHISIMETPKKVW 89

[Close]

BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0051808.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK21433.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-27
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+V  IKKLN QNYKTW TCMKSYLQGQ+LW V G  +  PPED    KKWNIK 
Sbjct: 2  MMGDLQVVRGIKKLNNQNYKTWSTCMKSYLQGQDLWDVIGATEFNPPEDAAVLKKWNIKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
          GKV+F I+  +DEEMLEHI+I++ PK AW
Sbjct: 62 GKVLFTIKTTVDEEMLEHISIIETPKKAW 90

[Close]

BLAST of Clc06G10535 vs. NCBI nr
Match: KAA0045163.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.5e-27
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+VG IKKLNTQNYKTW TCMK YLQGQ+LW V GG +V P ED  A KKWN K 
Sbjct: 2  MMGDLQVVGGIKKLNTQNYKTWSTCMKLYLQGQDLWDVVGGTEVNPSEDAAALKKWNNKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
           K MF I+  ID+EMLEHI+I++ PK AW
Sbjct: 62 DKAMFTIKTTIDKEMLEHISIMETPKKAW 90

[Close]

BLAST of Clc06G10535 vs. NCBI nr
Match: XP_023758851.1 (uncharacterized protein LOC111907314 [Lactuca sativa])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 56/90 (62.22%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 2  MGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVI--AFKKWNIK 61
          MG LQ+VG IKKLN  NYKTW TCMKSYLQGQ+LW V GG +  PPE+ +  A +KW IK
Sbjct: 1  MGDLQVVGGIKKLNNNNYKTWETCMKSYLQGQDLWEVVGGSETTPPEEDVNGALRKWKIK 60

Query: 62 EGKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
           GK MFA++  I+EEMLEHI     PK AW
Sbjct: 61 AGKAMFALKTTIEEEMLEHIRDENTPKEAW 90

[Close]

BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5D3CHH6 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00550 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.2e-30
Identity = 64/86 (74.42%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+VG IKK NTQNYKTW TCMKSYLQGQ+LW V GG +V PPED  A KKWNIK 
Sbjct: 2  MMGDLQVVGGIKKFNTQNYKTWSTCMKSYLQGQDLWDVVGGTEVNPPEDAAALKKWNIKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPK 87
          GKVMFAI+  IDEEMLEHI+I++ PK
Sbjct: 62 GKVMFAIKTTIDEEMLEHISIMETPK 87

[Close]

BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5A7T1U9 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00800 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 6.4e-28
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+ G IKKLNTQNYKTW TCMKSYLQGQ+LW V GG +V PPED    KKWNIK 
Sbjct: 2  MMGDLQVKG-IKKLNTQNYKTWSTCMKSYLQGQDLWDVVGGTEVNPPEDAATLKKWNIKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
          GK  FAI+  IDEEMLEHI+I++ PK  W
Sbjct: 62 GKATFAIKTTIDEEMLEHISIMETPKKVW 89

[Close]

BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5D3DCY7 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00980 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.3e-28
Identity = 59/89 (66.29%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+V  IKKLN QNYKTW TCMKSYLQGQ+LW V G  +  PPED    KKWNIK 
Sbjct: 2  MMGDLQVVRGIKKLNNQNYKTWSTCMKSYLQGQDLWDVIGATEFNPPEDAAVLKKWNIKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
          GKV+F I+  +DEEMLEHI+I++ PK AW
Sbjct: 62 GKVLFTIKTTVDEEMLEHISIIETPKKAW 90

[Close]

BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5A7TNQ2 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00830 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 60/89 (67.42%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+VG IKKLNTQNYKTW TCMK YLQGQ+LW V GG +V P ED  A KKWN K 
Sbjct: 2  MMGDLQVVGGIKKLNTQNYKTWSTCMKLYLQGQDLWDVVGGTEVNPSEDAAALKKWNNKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
           K MF I+  ID+EMLEHI+I++ PK AW
Sbjct: 62 DKAMFTIKTTIDKEMLEHISIMETPKKAW 90

[Close]

BLAST of Clc06G10535 vs. ExPASy TrEMBL
Match: A0A5D3E785 (DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00180 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 61/89 (68.54%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MMGHLQIVGEIKKLNTQNYKTWFTCMKSYLQGQNLWGVAGGIKVKPPEDVIAFKKWNIKE 60
          MMG LQ+ G IKKLNTQ YK W TCMKS LQGQ+LW V GG KV P EDV A KK NIK 
Sbjct: 2  MMGDLQVEG-IKKLNTQKYKAWSTCMKSDLQGQDLWNVVGGTKVNPLEDV-ALKKSNIKA 61

Query: 61 GKVMFAIRIIIDEEMLEHINIVQMPKIAW 90
           K MFAI+  IDEEMLEHI+I++ PK AW
Sbjct: 62 RKAMFAIKTTIDEEMLEHISIMETPKKAW 88

The following BLAST results are available for this feature:

BLAST of Clc06G10535 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037685.1	1.1e-29	74.42	uncharacterized protein E6C27_scaffold1593G00060 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0037350.1	1.3e-27	69.66	Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, cata...	[more]
KAA0051808.1	1.7e-27	66.29	UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK21433.1 UBN2_3 d...	[more]
KAA0045163.1	6.5e-27	67.42	UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 d...	[more]
XP_023758851.1	2.0e-23	62.22	uncharacterized protein LOC111907314 [Lactuca sativa]	[more]

BLAST of Clc06G10535 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G10535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHH6	5.2e-30	74.42	DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T1U9	6.4e-28	69.66	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DCY7	8.3e-28	66.29	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7TNQ2	3.2e-27	67.42	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3E785	3.6e-23	68.54	DUF4219 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Clc06G10535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..38 e-value: 7.1E-8 score: 32.0
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 12..100
None	No IPR available	PANTHER	PTHR37610:SF42	SUBFAMILY NOT NAMED	coord: 12..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10535.1	Clc06G10535.1	mRNA