Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTCCCTTCCATTACTTCACAATCCAAACCCAAATGTCCACCGCCAATTACAAGCAAAAAACCCAAGTTACAGAGAGAGTTGCAAGGACTTCATTCCCCAATACACTACAATAAGACAACGACATTGGCTATTAGGGAGGGATCTTTTGTATCTTAATGAAATTTATATCATGGAATGTTCACGGAATCAATTCTTGGAGAAAATGTACTTTGGTTAAAAAGCTCATTCAACAACATAATACGGGTATTGTTCTTTTACAAGAAACAAAGCTGTCATCTGTGGATTCCCATTTGATTAAATCAATATGGAGCTCTACTTACATTGGTTGGACATCCTTGTATGCTATTGATTCTTCGGCGGGTATTCTCATTTTTTGGAGTGAATCAGACTTTTCTATCAATGATGTCATTCAAGTTAATTTTTCTGTCTCTATTCAAGTAACATTGGCTGATGGTTATTCTTTTTGGCTTTGCGCTGTTTATTGTCTGACCGATAATGTCTACCATGCTGATTTTTGGCAAAAGTTTGATGATTTGGCGTGTTTGGGAGGAGATAACTGGGTTATTGGTTTGGAAGGAAATCTCATGATCGAACGATATCATCCAATATTCGTGCATTTAATCGTTGGATATAACTACCAGCTCCATGATATCCCTTTATTTAATGGCTGCTTTACTTGGTCTAGCTTTGGCTCTATTCAATACATGTCCCTCCTTGACAGATTTTTTATCATGAAAAATTGTCTACAGAAGTTCGGAGTTGTTACTCTTAAAAGTCTAGAAAGAACTACATCAGATCACTTTCCTTTGGATTTAACATGA
mRNA sequence
ATGGCCGTCCCTTCCATTACTTCACAATCCAAACCCAAATGTCCACCGCCAATTACAAGCAAAAAACCCAAGTTACAGAGAGAGTTGCAAGGACTTCATTCCCCAATACACTACAATAAGACAACGACATTGGCTATTAGGGAGGGATCTTTTCTCATTCAACAACATAATACGGGTATTGTTCTTTTACAAGAAACAAAGCTGTCATCTGTGGATTCCCATTTGATTAAATCAATATGGAGCTCTACTTACATTGGTTGGACATCCTTGTATGCTATTGATTCTTCGGCGGGTATTCTCATTTTTTGGAGTGAATCAGACTTTTCTATCAATGATGTCATTCAAGTTAATTTTTCTGTCTCTATTCAAGTAACATTGGCTGATGGTTATTCTTTTTGGCTTTGCGCTGTTTATTGTCTGACCGATAATGTCTACCATGCTGATTTTTGGCAAAAGTTTGATGATTTGGCGTGTTTGGGAGGAGATAACTGGGTTATTGGTTTGGAAGGAAATCTCATGATCGAACGATATCATCCAATATTCGTGCATTTAATCGTTGGATATAACTACCAGCTCCATGATATCCCTTTATTTAATGGCTGCTTTACTTGGTCTAGCTTTGGCTCTATTCAATACATGTCCCTCCTTGACAGATTTTTTATCATGAAAAATTGTCTACAGAAGTTCGGAGTTGTTACTCTTAAAAGTCTAGAAAGAACTACATCAGATCACTTTCCTTTGGATTTAACATGA
Coding sequence (CDS)
ATGGCCGTCCCTTCCATTACTTCACAATCCAAACCCAAATGTCCACCGCCAATTACAAGCAAAAAACCCAAGTTACAGAGAGAGTTGCAAGGACTTCATTCCCCAATACACTACAATAAGACAACGACATTGGCTATTAGGGAGGGATCTTTTCTCATTCAACAACATAATACGGGTATTGTTCTTTTACAAGAAACAAAGCTGTCATCTGTGGATTCCCATTTGATTAAATCAATATGGAGCTCTACTTACATTGGTTGGACATCCTTGTATGCTATTGATTCTTCGGCGGGTATTCTCATTTTTTGGAGTGAATCAGACTTTTCTATCAATGATGTCATTCAAGTTAATTTTTCTGTCTCTATTCAAGTAACATTGGCTGATGGTTATTCTTTTTGGCTTTGCGCTGTTTATTGTCTGACCGATAATGTCTACCATGCTGATTTTTGGCAAAAGTTTGATGATTTGGCGTGTTTGGGAGGAGATAACTGGGTTATTGGTTTGGAAGGAAATCTCATGATCGAACGATATCATCCAATATTCGTGCATTTAATCGTTGGATATAACTACCAGCTCCATGATATCCCTTTATTTAATGGCTGCTTTACTTGGTCTAGCTTTGGCTCTATTCAATACATGTCCCTCCTTGACAGATTTTTTATCATGAAAAATTGTCTACAGAAGTTCGGAGTTGTTACTCTTAAAAGTCTAGAAAGAACTACATCAGATCACTTTCCTTTGGATTTAACATGA
Protein sequence
MAVPSITSQSKPKCPPPITSKKPKLQRELQGLHSPIHYNKTTTLAIREGSFLIQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERYHPIFVHLIVGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFGVVTLKSLERTTSDHFPLDLT
Homology
BLAST of Clc06G10448 vs. NCBI nr
Match:
XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])
HSP 1 Score: 129.0 bits (323), Expect = 5.6e-26
Identity = 73/206 (35.44%), Postives = 118/206 (57.28%), Query Frame = 0
Query: 53 IQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIND 112
I + N +V+LQETKLS +D ++KS+WS+ I W++L A ++GILI W++ D +
Sbjct: 24 ISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSALDASGMASGILILWNDPDLKAAE 83
Query: 113 VIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL 172
+I+ FS++I L+DG+ FW+ +Y + +H FWQ+ DL+ L ++W+ L G+
Sbjct: 84 MIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLFWQELLDLSDLCENHWI--LAGDF 143
Query: 173 MIERY-------HPIFVHLIVGYNY----QLHDIPLFNGCFTWSSFGSIQYMSLLDRFFI 232
+ R+ P+ + + ++ L D+PL NG TWS S SL+D F +
Sbjct: 144 NVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSRNTS---FSLIDCFLL 203
Query: 233 MKNCLQKFGVVTLKSLERTTSDHFPL 248
C+ K G+ K + RTTSDHFP+
Sbjct: 204 TNGCIDKLGMPIAKRMTRTTSDHFPI 224
BLAST of Clc06G10448 vs. NCBI nr
Match:
XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])
HSP 1 Score: 108.2 bits (269), Expect = 1.0e-19
Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 0
Query: 60 IVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFS 119
IV+L ETK SS+++ IKS+WSS I W SL A +S GI++ W + S +VI +FS
Sbjct: 31 IVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGIILLWDQLSTSAVEVICGHFS 90
Query: 120 VSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERYHP 179
+S+ LAD +++WL VY FWQ+ DL L G W++G + N+ +
Sbjct: 91 ISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGLCGPIWLLGEDFNIYRWSHET 150
Query: 180 IFVH-LIVGYNYQLHDIP--------LFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFG 239
+ G N H I + NG +TWS+ +S ++RF K KF
Sbjct: 151 SSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDKFS 210
Query: 240 VVTLKSLERTTSDHFPL 248
+K L R SDH+P+
Sbjct: 211 HHHIKRLPRACSDHYPI 227
BLAST of Clc06G10448 vs. NCBI nr
Match:
XP_031739979.1 (uncharacterized protein LOC116403332 [Cucumis sativus])
HSP 1 Score: 100.9 bits (250), Expect = 1.6e-17
Identity = 59/167 (35.33%), Postives = 87/167 (52.10%), Query Frame = 0
Query: 52 LIQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIN 111
L+ + N +V+LQ++K+S+V+ HL+KS+WSS ++GW +L A SS GILI W E ++
Sbjct: 16 LLVKFNPDVVILQKSKVSTVNRHLVKSVWSSWFVGWATLEAYGSSGGILILWKEDSITVV 75
Query: 112 DVIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGN 171
D IQ FS+SI G+S W+ VY + FW + L L +NW +G + N
Sbjct: 76 DSIQGQFSISIHWKFNAGFSGWITGVYGPSSYRLRDQFWWELSSLYGLCNENWCVGGDFN 135
Query: 172 LM-----------IERYHPIFVHLIVGYNYQLHDIPLFNGCFTWSSF 208
++ R F LI + DIP NG F+W F
Sbjct: 136 VVRWLNEKSSDACPTRSMIRFTSLI--EELDMVDIPFRNGRFSWPPF 180
BLAST of Clc06G10448 vs. NCBI nr
Match:
CAN60722.1 (hypothetical protein VITISV_022058 [Vitis vinifera])
HSP 1 Score: 100.1 bits (248), Expect = 2.8e-17
Identity = 65/206 (31.55%), Postives = 94/206 (45.63%), Query Frame = 0
Query: 53 IQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIND 112
++ N +V+ QETK D + S+WS W L +S GILI W+ S +
Sbjct: 231 LRLQNPNVVMFQETKRKVCDRKFVNSVWSVRNKEWVILPTCGASGGILIIWNSKKMSGEE 290
Query: 113 VIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL 172
V+ +FSVS++ L WL AVY + DFW + DL CL +W +G + N+
Sbjct: 291 VVIGSFSVSVKFLLDGSGPLWLSAVYGPNNPSIRKDFWVELLDLFCLTYPSWCVGGDFNV 350
Query: 173 MIERYHPI----FVHLIVGYN-----YQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMK 232
+ R + F + ++ +LHD PL N FTWS+ LDRFF
Sbjct: 351 IRRRSEKLEGSGFTSSMRDFDGFIRECELHDPPLRNASFTWSNMQESPVCKRLDRFFYSN 410
Query: 233 NCLQKFGVVTLKSLERTTSDHFPLDL 250
F + L R TSDH+ + L
Sbjct: 411 EWELSFPQSLQEVLPRWTSDHWSIVL 436
BLAST of Clc06G10448 vs. NCBI nr
Match:
XP_023905831.1 (uncharacterized protein LOC112017605 [Quercus suber])
HSP 1 Score: 97.8 bits (242), Expect = 1.4e-16
Identity = 70/207 (33.82%), Postives = 104/207 (50.24%), Query Frame = 0
Query: 52 LIQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIN 111
L+++ IV +QETKL S S+++KS+W S ++ W +L AI ++ G+ + W F I
Sbjct: 21 LLREWKCDIVCVQETKLDSTSSNMVKSLWGSPFVDWGALDAIHTAGGVTLMWDRRVFEIV 80
Query: 112 DVIQVNFSVSIQVT-LADGYSFWLCA-VYCLTDNVYHADFWQKFDDLA-------CLGGD 171
D + +FS+SI + +ADG+ W+C+ VY TD W + D + CL GD
Sbjct: 81 DSVVGSFSISIVLKGVADGFE-WICSGVYGPTDASLRDAMWAELDLVRSRWAGAWCLLGD 140
Query: 172 NWVIGLEG-NLMIERYHP-IFVHLIVGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFF 231
VI L + P IF + L D+PL G +TW MS LDR
Sbjct: 141 FNVIRYPAERLGCNSFSPVIFKFSDFIAKHSLIDLPLVGGEYTWFRDSDSPSMSRLDRVL 200
Query: 232 IMKNCLQKFGVVTLKSLERTTSDHFPL 248
+ + + F VT ++L R SDH PL
Sbjct: 201 MTTDWEEHFLDVTQRTLPRVVSDHCPL 226
BLAST of Clc06G10448 vs. ExPASy TrEMBL
Match:
A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)
HSP 1 Score: 129.0 bits (323), Expect = 2.7e-26
Identity = 73/206 (35.44%), Postives = 118/206 (57.28%), Query Frame = 0
Query: 53 IQQHNTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSIND 112
I + N +V+LQETKLS +D ++KS+WS+ I W++L A ++GILI W++ D +
Sbjct: 24 ISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSALDASGMASGILILWNDPDLKAAE 83
Query: 113 VIQVNFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL 172
+I+ FS++I L+DG+ FW+ +Y + +H FWQ+ DL+ L ++W+ L G+
Sbjct: 84 MIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLFWQELLDLSDLCENHWI--LAGDF 143
Query: 173 MIERY-------HPIFVHLIVGYNY----QLHDIPLFNGCFTWSSFGSIQYMSLLDRFFI 232
+ R+ P+ + + ++ L D+PL NG TWS S SL+D F +
Sbjct: 144 NVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNGQHTWSRNTS---FSLIDCFLL 203
Query: 233 MKNCLQKFGVVTLKSLERTTSDHFPL 248
C+ K G+ K + RTTSDHFP+
Sbjct: 204 TNGCIDKLGMPIAKRMTRTTSDHFPI 224
BLAST of Clc06G10448 vs. ExPASy TrEMBL
Match:
A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 5.0e-20
Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 0
Query: 60 IVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFS 119
IV+L ETK SS+++ IKS+WSS I W SL A +S GI++ W + S +VI +FS
Sbjct: 31 IVILSETKSSSINNKFIKSLWSSISIAWASLDASGASGGIILLWDQLSTSAVEVICGHFS 90
Query: 120 VSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLMIERYHP 179
+S+ LAD +++WL VY FWQ+ DL L G W++G + N+ +
Sbjct: 91 ISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQELFDLNGLCGPIWLLGEDFNIYRWSHET 150
Query: 180 IFVH-LIVGYNYQLHDIP--------LFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFG 239
+ G N H I + NG +TWS+ +S ++RF K KF
Sbjct: 151 SSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTWSNLRPHIVLSRINRFLYSKGWSDKFS 210
Query: 240 VVTLKSLERTTSDHFPL 248
+K L R SDH+P+
Sbjct: 211 HHHIKRLPRACSDHYPI 227
BLAST of Clc06G10448 vs. ExPASy TrEMBL
Match:
A0A7N2L897 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 101.3 bits (251), Expect = 6.1e-18
Identity = 74/253 (29.25%), Postives = 126/253 (49.80%), Query Frame = 0
Query: 16 PPITSKKPKLQRELQGLHSPIHYNKTTTLAIREG----------SFLIQQHNTGIVLLQE 75
PP+ + + L REL+GL S ++Y+ TL+ + G L+++ +V LQE
Sbjct: 485 PPVKAGQKGL-RELRGLFSSVNYD--GTLSEQRGLNNPQKMEVCKNLLKEWRCDVVCLQE 544
Query: 76 TKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFSVSIQVT 135
TKL+S++S L++S+W S ++ W L A+ +S G+L+ W + DV FSVS+ +
Sbjct: 545 TKLASINSTLVRSLWGSPFVNWAVLDAVQTSRGVLLIWDKRVVEKIDVSVGRFSVSVLLK 604
Query: 136 -LADGYSFWLC-AVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNLM--------IE 195
+ DG+ W+C +Y + + A W++ + W + + N++ E
Sbjct: 605 GVLDGFE-WVCTGLYGPNVDHHRAALWEELSRVRVRWNTAWFLFGDFNIIRFPCERLGCE 664
Query: 196 RYHP-IFVHLIVGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFGVVTL 248
+ P +F N L D+PL FTW Q MS +DR + + + FG+++
Sbjct: 665 SFSPAMFAFSDFIENNYLVDLPLEGAAFTWFRDAEPQAMSHIDRTLVSMDWVDHFGIMSQ 724
BLAST of Clc06G10448 vs. ExPASy TrEMBL
Match:
A0A7N2M0A0 (Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1)
HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17
Identity = 75/242 (30.99%), Postives = 116/242 (47.93%), Query Frame = 0
Query: 22 KPKLQRELQGLHSPIHYNKTTTLAIREGSF---LIQQHNTGIVLLQETKLSSVDSHLIKS 81
K K +REL+ L S ++Y+ R+ S L+++ ++ LQETKLS +D ++ S
Sbjct: 1313 KDKGKRELRNLQSSVNYDGRGLNDSRKRSIVKNLLREWKCDVICLQETKLSDLDRQMVGS 1372
Query: 82 IWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQVNFSVSI-QVTLADGYSFWLCA- 141
+WS Y+ W +L A+ ++ G+L+ W + + +FSVS+ L DG+ W C+
Sbjct: 1373 LWSCPYVDWVALDAVQTAGGVLLMWDSRVLERLEFLVGSFSVSVWWQGLGDGF-IWACSG 1432
Query: 142 VYCLTDNVYHADFWQKFDDL--------ACLGGDNWVIGLEGNLMIERYHP---IFVHLI 201
VY D+ W K + C+G N V L R P +F I
Sbjct: 1433 VYGPVDDNARGLMWDKLVGVHHFWNVPWCCIGDFNIVRFPSERLGNSRLTPTMELFSEFI 1492
Query: 202 VGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMKNCLQKFGVVTLKSLERTTSDHF 248
N L D+PL G +TWSS + MS LDR + + + + V + L R SDHF
Sbjct: 1493 EDLN--LIDLPLEGGSYTWSSGSNQPSMSRLDRVLVSPDWEEHYPDVIQRILPRPISDHF 1551
BLAST of Clc06G10448 vs. ExPASy TrEMBL
Match:
A0A803P8A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 98.2 bits (243), Expect = 5.1e-17
Identity = 66/202 (32.67%), Postives = 92/202 (45.54%), Query Frame = 0
Query: 57 NTGIVLLQETKLSSVDSHLIKSIWSSTYIGWTSLYAIDSSAGILIFWSESDFSINDVIQV 116
N +V+LQE K ++VD I SIW S + W L AI S G L+ W S+ D +
Sbjct: 28 NPDMVILQEVKRATVDRRFIGSIWRSRFKAWILLPAIGRSGGTLLIWDTRIISVLDSLVG 87
Query: 117 NFSVSIQVTLADGYSFWLCAVYCLTDNVYHADFWQKFDDLACLGGDNWVIGLEGNL---- 176
FS+S+ + +W VY FW + L+ + G++W +G + N+
Sbjct: 88 EFSISVLINAEGKEPWWFSGVYGPCSYKIRHVFWDELAGLSSICGESWCVGGDFNVTRRV 147
Query: 177 -------MIERYHPIFVHLIVGYNYQLHDIPLFNGCFTWSSFGSIQYMSLLDRFFIMKNC 236
R +F LI QL D L NG FTWS+F +I S LDRF + N
Sbjct: 148 GEKLNSSSSTRSMKLFDGLI--RELQLIDPKLENGSFTWSNFRAIPICSRLDRFLFLNNW 207
Query: 237 LQKFGVVTLKSLERTTSDHFPL 248
F V + L R SDH P+
Sbjct: 208 NVVFPFVRQEMLVRLVSDHSPV 227
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E2G6 | 2.7e-26 | 35.44 | uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1CVN2 | 5.0e-20 | 34.52 | uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A7N2L897 | 6.1e-18 | 29.25 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
A0A7N2M0A0 | 3.0e-17 | 30.99 | Kinesin motor domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1 | [more] |
A0A803P8A0 | 5.1e-17 | 32.67 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |