Clc06G10270 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10270
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	rubisco accumulation factor 1, chloroplastic
Location	ClcChr06: 15142297 .. 15149682 (-)
RNA-Seq Expression	Clc06G10270
Synteny	Clc06G10270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTGAAATGTTATTAATTATAATGATAATAGGTTTGAATGCTAGTTTGTTTAGTGTTTTTATGATTTTATTGTGTAAAGTGTCTATAATGTTTGTATTTTTATTTTCAATTTAATCTCGATTTTTCTAAAAGAAGATTTCACTTTTTTTTATTATTTTTATTTTTTAAAATTTAGTCCCTCATGTGGTGAAGGTTAAAATTGACCATAAATTTAGAACAAATTGCAAATACCATAACATGTATGGTGGTAGTTGTAATTTGCGCATATTTATGTTGTCACACCCCATCCCGAACTACCCTCCCGTGGCCCGAGACAGAGTGTGAGGACAGCAGTCATCGACTTCCCAGTCGACTCCCACTGTCAAACTTACCTTATTTCCCATTTAACCACCTTCCTAGGATGGTGATACCATTAACTCTTGACAAACCTCGACTTCGACCGGCAACAGGAACTGTCATGCTACCTGAAAAATGGAAAACATATGAAAGGATGAGCTAACAGCTCAGTGAGTAACAGTTTTTGAAAATATCTTACTTTAACTATAAAATTGGTCATAATATAAACATTGTCAACTACGCATATAAAATATCGATTCAAGTCATATTAAAACATGCTCAAATGCCATTGTTAAATCATGCATGCTTATTTCAGAGAAAAATACTAAAAAATTTCATTCATTTCAAATCATTCTCCTTAGTTGAGGCAGAGCGGTGCTCTACACTTCTCAACATCGAAAACATTTCATATCTTTTCCTTAATTGAGGAGAAGCCGAGCTCTACGCTACTCAACGTCGATTATCCTTAGCTGTGTGGAGTAATCTCAACACATCAGCGTCATATATTCCTCTATATGCACATAGGTATTATAATCCGAGCTGCCCACATGCCTTCTCCAAGTCCTTGAGCATTGGGGTCCCATTTCCATATCTAGGTTACCCATTTGGCTTCTTCGAGTCCCTCAGCGTTGGGTACCTTTTCTATATTCCGGCTACCCTTTGGCCTTTTCCAAGTCCTTGAGCTTTGGGTGCCATTTCAAGATTTTATAAAAATGCACAATATGTTTTGGAAACATCATATCATAAATTCATAAGTTAACCGTTTCAAAATCTTTCATAAAATCATATAATACCAACCAGCATGCTTTCAATAAACTCAATTTCAAATCTTTAATATCAAACAGCATGCTTTTCAATAAGCTTATTTCCAAATCTTTCATGAAATCATATAACATCTATCAGCATGCTTTTCAATAAAACCATAAAAATCATATAATATCATACAACATGCTTTTCAATTAACTCATTTCAAACAACCAACATGCTCAAATACTTTTTAAATATAAACGCATGCTATACACGTTGAAAACTCATGAATGCTTAATCAAATTCCAAAACCATTGCTATTGATCACAGAGAACGCATTCATATTTTGAAAAATGTTAGTGTTACTCACTTAATACTTGCTCAAAGGTAGTTCCTTTTACTTCCTTCTAATTCTCTTTCCCGAGCTTCTTGGACGCAGCGTTCTGAAGTCTGAAACGCAAGACAACTTATATTCCTCTGTCAGCTCGGTTGGACGCAACCCTGCCCTTGAACGCAAGGTTAGTTACTTGAACGCAATATGCAGCCTTTCAACTAACTCTTTTGGCTTCACCCCTTGGAAGCACAGATCTCCTTGAACGCAAGGTCTACCTTGAAAGTAGAGTCTATCTTTGGACGCAGTGTTCACCTTGAACGTCGAGTTTATCTTGAACGCAAAACTACTTGTTGAACGCAAGGTATCTAGGTTGTTAAGAACACCTCATCTCTTAACCGCAGACTTCACCACGAACACAAGGATTTTCCCTTTTCTGCCTTCTCTCTACTTTCTCTCCAGAACTCAGACTTTATGATCATCCCCCGCTCCTTTCCTTCAAGGTCCTATTTATAGTTTTGGGATAAATTCAACTTCTCCTCTCTTTTTTGCCACTTGTTTGCCACCTGTCACGCTGCATGACACATCCGACATGCAACCCAACACTTACTCCTTATAATGTGTTAAGTTTAAATGAAACCACATAACCTTTATAAACTTACCTTATGCGTTTGACTTGCTCTGAGATACGAACTATGCATACAACTTAGTGCCCGTATGCGTCCATCTACTACTCCTTTTAAGGTTTAGCTTCTTTATTCTCTTTCTTCCTCACAGCCTTCCTACCTTTGACCAGGTTTCTCCCTCGCACATCAACATGTGTCTGTGCCTTAATTGCATACTATCATGCGTCCATTACTTCTTTCCTTATATCCATATCTTAGCTACAAGCCCTTCTCTTGAGTAATAAATATCCGACTATGCTTGTTATTCTGTTAACTAAAATCATCTCAAGGTCTTCCTTCATGCATTTGTACTTAATGCTTTTATCTCTACTTTCTTATGCGTCCATGACCTTTCTTCCATTCTTAAGGATTTCTTGATTGCCCCTCCATGCGTTCTTGAGTTGTAATCCAAGGTTATGCTTCCAACCTCTTCCTTATGCTTAGCCATTTTCTCAATCGATAAATCTAGTAGACGTCCATCTCCAGCCTCCTTTTAGGCTTACTTCTCAACCTTCTATCTCATCCAATTATTCAACAAAATTTTCCTTGATGGAAGTCATGCATTTACATTAAATTATAATAGCATCTTTCCTTGATTCCACCTTATACGTTTTATCCTTCTTTTCGAGGCTTATATTTCCTTTCAAAGCATCACTATTCAACTTTAGTCCTCTTACTCATACGTCCTACTTAAGCCAAGCTTACATCTCCTTCCTTAATTACCTTCTATACGTTTCACTTCTTTCCCTTCGAGCTCTCTCGGGTTACTTCCTACGCGTTCACCTCTTTCCCCCGAGCTCTCGGGTTTCCTTACAATACTTCAACACTTACCCATTTTCATTTCCACAATGGTTACCTTTATCATGTGTTTCCTTAGTCTTGACCATGCGTCCAACATGGTCTCTTACTTACCAAATATGCGTCCAACTCAATCTAACTCTTTCCATCACTTAGTGAGATTTTCTTTCTTTTCCTTAGATCATACTTCCAAGCTTAGAAACATAGTTGAGTTCTTCTAGCCTGGTTATTCTACTTAAAAGACTTCTTAACTCCAAGAATTACATTAATTCCAAAATTCAGAAATCACTCAGCGCAACCTTCCAATCCAATCCTTCTAATCCAAACTTATCTACGACTTATACTTACCCAATACTTAAAAGCACAAACCTCTCTTTTCCTTCAAGTTCAACGCATACTCATTCCTACTTTTAGCAATATTTCTCGGCCAACTCCACAACCTTGTGATCCAATACCACCTCTCTTTTCTTACAGAATTTCTTTACAAGCTCTTAAATGCATCGGTTTTAAAAGTAGAGTGGGACAATTCCATTCACCTTAGAAAAATTTCATCCTCGAAATTTAGACAGTATAATAAGGTTATGAAAGTGAAAAAAAAATACTTCTTTATTTATATGCGTTGTCTGTACAAATCTTACTTAAAAAATACATTCAAAAAAAAAAAAAAAAAAGAAAGAAAAGAACACTTCTTCCCATTCTTTCCTTCTTCCTTCCTTCTGCTTAGTTACTTGGGCCTCCCTTGTTCTGTGGACAATCTTTGCAATAGTGTCCAAGCTGATCACACATATAACAAACATCCTCTCTTCCTTCTTGATCTCCTCTATGTCTCCGTCCACAGTTGTTGCAGAGATTTTCTTTTTCCAACTCTTTGGGTGGATCGTAAAAATCCGTGAACGCTTTGCACTAATTTCGTTGGTGTCCTTTCATCCTACATGCAAAACACCTATCTGTTCCTTTTAAGCATTCTCCCGTATGGCTTTTCCTACATTCCAGGCACCTAATCCATGAACATTTTCGTTTCCCCTTGCTTTCCTTACCTGACATAATGAGTACACGAAAATAAATTAATTTTGTGGCATCTACAACTCAAGTAAATTCAGTTCTACAAGTAATTTTGTCTATCTTTGATACTTCCTTAATATTACTTAGATTCCTGTTTGAATACATTATTTTCCTCTGATGGGATCCAATACATGAATATAGAAAACAATTCATAAGTAATACTTCCTTTTTCGTAGAATTTTCACAAGTTTCAACTGATTATTGTCTAGCATCATGCGTTTGTTCCATAGGCTTCCTTGAACGCATATTCCGCCAACACGTACTTGGTTACAAACCTGAGCGCATAGTTTGGTTGCCAACTTGGACGCGCCGCACCATGCGTCTAAACTATTACACCCGCAAATTTCGCCAATTCGACCAACGCAACCTTCTACCGATCTCAACCAACGCATATCTACTGGTTCAACAATCTCATCAACGCATAGCCTCGAACATTTACTATTGCTCAACTTTTTGGACGCATGCCTCAACAATCCCACACTTCAACCTTTATGCTTAGACTCGGCTACGCAATTTCTTCCCTATTTTCAGCCATTACCCATGCTCACTCTCCTAACGCATGGACATTTCAAGCTCAAAGGTTCTCGGTCATCACTTTCAATTACCCGACTACTTGCTTGCCTTTTTTCCAAAGTTGAGAGTAGAGCTTTACAACTTACCAATTCCTTACAAGAATTTCATCCTAAAAATTCTGTAGGTTGTTAGTCTCTCAAGAACAATTGTGGATACTGTTTTATCATTTGCTCATTGGGCTTGGCTTCCCAAATAGCTTCTTCTACACCATGATTTTTCCACAAATCTTAGACTAACGAAATCAACTTAGTTCTTAGTACTTACTCCTTCTCATCTAACACTTGAATCGATTCCTCCTCATAACTCAAATCTTCTCTTACCTCAATCGGTTGCACCTTAGTATATGAGTAGGATCAGGGACATATTCCTTAAAACATAAAACATATTATGATCCTTAGACACGATACTGAACTGCAACTTCGTTTTTAAAGCCTGTTGCGAACTTTTCCAGAACTTAGAACTTATTCACATGCATCTGTACCAATCTATCCAGTGTATATGTTTCTTTGACGGGTAAGAAATGCTCTATCTTCGTCAACTTTTCAACAATTATCCAAATTTTCGTCAACATTTGCTGACCCTCTTGGTAATCCAAAGAAGAAAACCATTATAACATATTTCCACTTCCACTTAGGAATAGAAAGTGCATTTAGTATCCTTGCCAGCTTTTGCCATTCAGGCTTTACCTACTAACAAAACACTTTGTCACGTATTCTGCTATTTCCCTTTTTATACCTGGTTGTTAGTAAAATCTCCTTGACGTTCTATACATTGCAGTACTACCAGGTTGCATAGCATAAGCCGAGCTATATGGTTCCTATTAATCCTTATAGACTTCGTGGTCACCCATCAATGCGTCCACGAGGTATAACACAAGGCTTTGCTTCCAATTTTTCCTTTTTACTTCTCCCATAATTAACCGTTTCCTTAATGATTATTCTAATATCCATCCATCTCTTGTTTCCCTCTTTTAGGTTTGCTTTCCACTCCTCCAGCATATCCAACACTCAACCTTAGTCCCTTTTGGCTAGCTCATATAACCACTCTAAGTTAAAGTTGAATCTCAATCCTTAACTATTATGAATTTCAGCTTCTCAATGCGTAGCCTTACCACACATTATGATATAATAATAAGATAATGAAACATCTAAAGGCATATTGGTAAAATTAATGTATTAGTAATATATCCATACATGTGGCCGAAGCTTCCAATTTTATAACTCAATCTCGACCAAGTTTGCCCGAAAAAAAACTACATTTGAGAGTTTCAAGAATTTTTGTTATTTTTTAAAAGGAAAAACTTGGGAGGGTTAGTTTGGACAATTTCTCAGTAAATATACACATTAGGAAATATAACCAAATTACTATTTTAGCCTCAGCCTGAAATTGTAAAAAAATATCTCCCACTCCCATATTTCCAAAATTATCAAATAGATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCTAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCCATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGGTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACACCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAAGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATAAGGCAAGGGACCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAATAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGACAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTATTGTTGGTGGTTAGGCCACCAAAGGAAATGGAAGATGATCAGTTGAGTGATGAAGATTGGGATTGA

mRNA sequence

ATGTTTGTCCCTCATGTGGTGAAGATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCTAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCCATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGGTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACACCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAAGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATAAGGCAAGGGACCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAATAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGACAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTATTGTTGGTGGTTAGGCCACCAAAGGAAATGGAAGATGATCAGTTGAGTGATGAAGATTGGGATTGA

Coding sequence (CDS)

ATGTTTGTCCCTCATGTGGTGAAGATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCTAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCCATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGGTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACACCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCGGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAAGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATAAGGCAAGGGACCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAATAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGACAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTATTGTTGGTGGTTAGGCCACCAAAGGAAATGGAAGATGATCAGTTGAGTGATGAAGATTGGGATTGA

Protein sequence

MFVPHVVKIRYRDALPLLFSSFPFPPPSPSTMLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD

Homology

[Close]

BLAST of Clc06G10270 vs. NCBI nr
Match: TYK28779.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 793.5 bits (2048), Expect = 1.0e-225
Identity = 407/454 (89.65%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of Clc06G10270 vs. NCBI nr
Match: XP_008462710.1 (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 792.3 bits (2045), Expect = 2.3e-225
Identity = 406/454 (89.43%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWF+YAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of Clc06G10270 vs. NCBI nr
Match: KAA0062559.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 790.8 bits (2041), Expect = 6.6e-225
Identity = 406/454 (89.43%), Postives = 424/454 (93.39%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKV VT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of Clc06G10270 vs. NCBI nr
Match: XP_038880540.1 (rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 789.3 bits (2037), Expect = 1.9e-224
Identity = 408/451 (90.47%), Postives = 425/451 (94.24%), Query Frame = 0


Query: 35  STTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVY 94
           STTTTANSLTSLSAAAHTTA FLHPP DSSLRLFLRRRPN ISA +N  PSPLAAKQQVY
Sbjct: 3   STTTTANSLTSLSAAAHTTATFLHPPRDSSLRLFLRRRPNSISATLN--PSPLAAKQQVY 62

Query: 95  QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGIS 154
           QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTP TLEEITGI+
Sbjct: 63  QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPPTLEEITGIT 122

Query: 155 GVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVEN 214
           GVQQNIFVVGAQVR+SLVQSNN+DPDVIAAFDTSGAELLYEIRLLSTEKRAAAA+YIVEN
Sbjct: 123 GVQQNIFVVGAQVRESLVQSNNADPDVIAAFDTSGAELLYEIRLLSTEKRAAAARYIVEN 182

Query: 215 RLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAAL 274
           RLD KGAQDLARA+KDFPRRRG+KGWE FDY+ PGDCLA+MYYRLSREYNN SE RTAAL
Sbjct: 183 RLDIKGAQDLARALKDFPRRRGDKGWECFDYEEPGDCLAYMYYRLSREYNNPSEPRTAAL 242

Query: 275 EEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMP 334
           EEALKVVVT+KARDLIVGDLEGKGDGKEG EEEI   +RVPVVR+KIGEVAEATTV+VMP
Sbjct: 243 EEALKVVVTEKARDLIVGDLEGKGDGKEGVEEEIEVGIRVPVVRMKIGEVAEATTVLVMP 302

Query: 335 VCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFED 394
           VCKAG+GE GVGEAPME+RSEGEFGVVVAEKEW +WVVLP WEPV GLVKGGGVVVAFED
Sbjct: 303 VCKAGEGEKGVGEAPMELRSEGEFGVVVAEKEWRKWVVLPGWEPVVGLVKGGGVVVAFED 362

Query: 395 ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALME 454
           ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLT ATV    GGGELKV+RGNALME
Sbjct: 363 ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTGATV----GGGELKVQRGNALME 422

Query: 455 MEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           M VKESLGTVLLVVRPPKEMEDDQLSDEDWD
Sbjct: 423 MGVKESLGTVLLVVRPPKEMEDDQLSDEDWD 447

[Close]

BLAST of Clc06G10270 vs. NCBI nr
Match: XP_004142574.1 (rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hypothetical protein Csa_007640 [Cucumis sativus])

HSP 1 Score: 777.3 bits (2006), Expect = 7.6e-221
Identity = 400/454 (88.11%), Postives = 423/454 (93.17%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSL+SLS+ AHTT+IFLH P DS LRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLN+LSNRLGLWFEYAPLISSL+QEGFTP  LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN F+VGAQVR+SL+QSN+SDPDVIA+FDT GAELLYEIRLLSTEKRAAAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARAMKDFPRRRG+KGWE FDYD  GDCLA+MYYRLSREYN+ +ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KARDLIVGDLEGKGDGK+G EEEIGAAV+VPVVR+KIGEVAEATTVV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEGEFGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           FEDAR LPWRVNRWYKEEPILVV DRSR+EVVAGDGFYL    +GGGDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL----MGGGDGGGDLKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           LMEM VKESLGTVLLVVRPP+E EDDQLSDEDWD
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

[Close]

BLAST of Clc06G10270 vs. ExPASy Swiss-Prot
Match: Q9LKR8 (Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.1 PE=1 SV=1)

HSP 1 Score: 439.1 bits (1128), Expect = 6.4e-122
Identity = 251/456 (55.04%), Postives = 322/456 (70.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
             LE+AL+  VT+KA+  ++ +L G+ + +   EEEI   +RVPVVRL+ GEVA A++VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KIIRVPVVRLRFGEVAGASSVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           V+PVCKA +GE  + EAPME  S GEFGVV AEK+WSRWVVLP W+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 392 FEDAR-ALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGN 451
           F D R  LPW      K E I+VV+DR +K V A +G+Y      GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 452 ALMEMEVKESLGTVLLVVRPPKEMEDD-QLSDEDWD 486
            L E  V ESLG V+LVVRPP++ +D+ Q++DEDWD
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

[Close]

BLAST of Clc06G10270 vs. ExPASy Swiss-Prot
Match: Q9SR19 (Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.2 PE=1 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.4e-121
Identity = 238/445 (53.48%), Postives = 315/445 (70.79%), Query Frame = 0


Query: 52  TTAIFLHP------PLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLP 111
           T  +F +P      PL  ++   +     P  +  N  P    A+QQ+YQPFRPP SP+P
Sbjct: 17  THGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLYQPFRPPSSPIP 76

Query: 112 SQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGA 171
           +Q+RSLD+ GK+ +L+ R+ LWFEYAPLISSL  +GFTP T+EE+TGIS ++QN  +VGA
Sbjct: 77  TQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGISSIEQNRLIVGA 136

Query: 172 QVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLA 231
           QVRDS++QS + +P++I+AFDT GAELLYEIRLLST +R AAA +I++  +DSKGAQDLA
Sbjct: 137 QVRDSILQSIH-EPELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLA 196

Query: 232 RAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDK 291
           RA+KD+P RRG+ GW  FDY+ PGDCL+F+YYR SRE  N S++RT+ L +AL V  ++K
Sbjct: 197 RAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSMLLQALGVAESEK 256

Query: 292 ARDL----IVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKG 351
           A++     + GD E + + ++  +EE   A+R+PVVRLK GEVAEAT+VVV+PVCKA +G
Sbjct: 257 AKNRLNTELYGDKEAEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSVVVLPVCKAEEG 316

Query: 352 EIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWR 411
           E  + EAPME+ + G+F VV AEK W RWVVLP+W PVA + KGG  V   +D + LPW 
Sbjct: 317 EKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD 376

Query: 412 VNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESL 471
                KEEP+LVV DR R  V A DG+YL  A  G       LK+E+G+ L   EVKESL
Sbjct: 377 ----GKEEPLLVVADRVRNVVEADDGYYLVVAENG-------LKLEKGSDLKAREVKESL 436

Query: 472 GTVLLVVRPPKEMEDD-QLSDEDWD 486
           G V+LVVRPP+E +DD Q S ++WD
Sbjct: 437 GMVVLVVRPPREDDDDWQTSHQNWD 449

[Close]

BLAST of Clc06G10270 vs. ExPASy Swiss-Prot
Match: Q7XDY9 (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RAF1 PE=2 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 8.8e-95
Identity = 203/415 (48.92%), Postives = 271/415 (65.30%), Query Frame = 0


Query: 83  SPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGF 142
           +P P A   Q+YQPF PPPSPLP +Y+ LD   +L VL +RLGLW EYAPLIS+L +EGF
Sbjct: 69  TPPPTAPPDQLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLISALSREGF 128

Query: 143 TPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDP-DVIAAFDT-SGAELLYEIRLLS 202
           TPS++EE TGISGV+QN  VV  QVRDSLV      P +++  FD+  G ELLYE+R L+
Sbjct: 129 TPSSIEEATGISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGGPELLYELRFLN 188

Query: 203 TEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLS 262
             +RA AA++ ++ RL+ +G ++LAR+MKDFP+RRG+ GWE+F  D+PGDCLAF  +R S
Sbjct: 189 ARQRADAARHAIDRRLEPRGVRELARSMKDFPQRRGDDGWEAFTRDNPGDCLAFARFRQS 248

Query: 263 REYNNQSERRTAALEEALKVVVTDKARDLIVGDLE---GKGDGKEGDEEE-----IGAAV 322
           RE  + +E   A LE AL+VV T+ AR  +  +L+    K  G+E D+E+       AA 
Sbjct: 249 REAID-AEDSVAELERALEVVDTEPARARVEAELDRARRKAAGEEVDDEDGAANAAAAAS 308

Query: 323 R--VPVVRLKIGEVAEATTVVVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRW 382
           R  VPVVRL  GEVAEATTV+++PV + G G   +  AP   R++ + G+V  +K W+RW
Sbjct: 309 RPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLGMVEVDKGWTRW 368

Query: 383 VVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYL 442
            V+P W PVA  V G  VV+   D R LPWR     + E +LVV +R R+EVV  DG Y+
Sbjct: 369 AVVPGWGPVAE-VAGEAVVIELADGRTLPWRS---AEAERVLVVANRGRREVVE-DGIYV 428

Query: 443 TEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
            E         G L VE+G  L    V E+   VL+VVRPP++ EDD +SD++WD
Sbjct: 429 VERE-------GRLVVEKGRKLAAEGVGEAAAEVLVVVRPPRD-EDDMISDDEWD 469

[Close]

BLAST of Clc06G10270 vs. ExPASy Swiss-Prot
Match: B4FR29 (Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 7.7e-91
Identity = 213/482 (44.19%), Postives = 292/482 (60.58%), Query Frame = 0


Query: 17  LLFSSFPFPPPSPSTMLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPI 76
           +L  S P P P+ ST       TA  +     A+H  A  +  P   S       R  P 
Sbjct: 1   MLSLSHPHPHPAASTTAPRHQRTA-PVWHRRRASHIAASAILLPGGGS----TGGRGGPG 60

Query: 77  SAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISS 136
              +  +P P+A   Q+YQPF PPPSPLP   R+LD   +L +L +R+GLW EYAPLISS
Sbjct: 61  DRRLPFTPPPMAPPGQLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISS 120

Query: 137 LIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNS--DPDVIAAFDT-SGAELL 196
           L ++GF PS+++E TGISGV+QN  VV +QVRDSL+    +   PD++  FD+  G E+L
Sbjct: 121 LSRDGFNPSSIQEATGISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLGGPEVL 180

Query: 197 YEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLA 256
           YE+R L+  +RA AA++ +  RL+ KG ++LARAMK FPR RGE+GWE+F  DSP DCLA
Sbjct: 181 YELRFLNARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEGWEAFSKDSPADCLA 240

Query: 257 FMYYRLSREYNNQSERRTAALEEALKVVVTDKARDLIVGDLE---GKGDG-----KEGDE 316
           F  +R SRE  +  + R A LE AL+VV T+  R  +  +LE    K  G     +EG+E
Sbjct: 241 FARFRQSREAIDVQD-RVAELERALQVVETESGRARVELELERARRKAAGEEEVDEEGEE 300

Query: 317 EEIGAAVR--VPVVRLKIGEVAEATTVVVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVA 376
           ++  A++R  V VVRL+ GEVAEATTV+++PV +   G   +  AP   +++   GVV  
Sbjct: 301 DDAAASLRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGLGVVEV 360

Query: 377 EKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVV 436
           ++ W+RW V+P W PVA       VVV   D R LPWR++    EEP+LV+ +RS+KEVV
Sbjct: 361 DRAWARWAVVPGWGPVAE-AADDAVVVELADGRRLPWRMS---DEEPVLVIANRSKKEVV 420

Query: 437 AGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDED 486
             +G Y+ E         G L VERG  L E  +  +   V++VVRPPK+ EDD +SDE+
Sbjct: 421 E-EGVYVLERE-------GRLVVERGKKLAEQGIAAAAAEVVIVVRPPKD-EDDMVSDEE 463

[Close]

BLAST of Clc06G10270 vs. ExPASy Swiss-Prot
Match: Q8YLP6 (RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=raf1 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.6e-24
Identity = 117/407 (28.75%), Postives = 192/407 (47.17%), Query Frame = 0


Query: 99  PPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQ 158
           PP +P P    +  A+  L  L  + G W E+   I+SL + G+ P  + E TG   VQQ
Sbjct: 5   PPNAPNPENATNELAQELLRKLRQKQGNWVEWGQAIASLQKSGYNPQDIFEATGFEPVQQ 64

Query: 159 NIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDS 218
           N  +VG+QV +SL +S  S    +A + T G+++LYE+RLL+ E+RAAA      +++D+
Sbjct: 65  NQVIVGSQVYNSLEKSGAS-AATLAHYATRGSDVLYELRLLTHEERAAAGDLTFTHKVDA 124

Query: 219 KGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEAL 278
             A+++A+A+KDF R R     E F  + PGD +A+  ++L+R+Y++  E R+  +   L
Sbjct: 125 DEAREIAKAIKDFSRFRILP--EGFS-NHPGDAVAYQAWKLARQYSDLQE-RSRLIARGL 184

Query: 279 KVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEV-------AEATTVV 338
           +   ++ AR  I               E++   V   VV  +   +        E     
Sbjct: 185 RFAHSETARKQI---------------EQL--LVDFTVVSQRPAPIPPFFRFDTEDELPR 244

Query: 339 VMPVCKAGKGEIGVGEAPME---------VRSEGEFGVVVAEKEWSRWVVLPAWEPVAGL 398
           ++PV         VG+ P++         V     F +V    E   WV LP W+     
Sbjct: 245 IVPV---------VGQLPLKAEELKAVPLVEEIEPFRLVKFSGE-QAWVALPGWQ----- 304

Query: 399 VKGGGVVVAFEDARALPWRVNRWYKEE-----PILVVVDRSRKEVVAGDGFYLTEATVGG 458
                V++A ED   +    +R+ K+      P+LVVVDRS++E    D  Y        
Sbjct: 305 -----VLLAAEDPVTILATSDRFPKQNQTEPGPVLVVVDRSQRE--WNDFSYFVV----- 357

Query: 459 GDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDW 485
            D  GEL  +      E  +   LG V+++VR P+ + D+ ++ + W
Sbjct: 365 -DHDGELDFQWFETKPEFPI---LGKVIILVR-PRRILDENVTKDSW 357

[Close]

BLAST of Clc06G10270 vs. ExPASy TrEMBL
Match: A0A5D3DZE4 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001420 PE=4 SV=1)

HSP 1 Score: 793.5 bits (2048), Expect = 5.0e-226
Identity = 407/454 (89.65%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of Clc06G10270 vs. ExPASy TrEMBL
Match: A0A1S3CHL8 (rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501013 PE=4 SV=1)

HSP 1 Score: 792.3 bits (2045), Expect = 1.1e-225
Identity = 406/454 (89.43%), Postives = 425/454 (93.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWF+YAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of Clc06G10270 vs. ExPASy TrEMBL
Match: A0A5A7VA63 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00440 PE=4 SV=1)

HSP 1 Score: 790.8 bits (2041), Expect = 3.2e-225
Identity = 406/454 (89.43%), Postives = 424/454 (93.39%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSLTSLS+ AHTTAIFLH P+DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKV VT+KAR+LIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           L EM VKESLGTV+LVVRPPKEMEDDQLSDEDWD
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQLSDEDWD 454

[Close]

BLAST of Clc06G10270 vs. ExPASy TrEMBL
Match: A0A0A0LY43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1)

HSP 1 Score: 777.3 bits (2006), Expect = 3.7e-221
Identity = 400/454 (88.11%), Postives = 423/454 (93.17%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLSST T ANSL+SLS+ AHTT+IFLH P DS LRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           QVYQPFRPPPSPLP QYRSLD EGKLN+LSNRLGLWFEYAPLISSL+QEGFTP  LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGVQQN F+VGAQVR+SL+QSN+SDPDVIA+FDT GAELLYEIRLLSTEKRAAAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           VENRLDSKGAQDLARAMKDFPRRRG+KGWE FDYD  GDCLA+MYYRLSREYN+ +ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
           AALEEALKVVVT+KARDLIVGDLEGKGDGK+G EEEIGAAV+VPVVR+KIGEVAEATTVV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           VMPVCKAG+GE GVGEAPMEVRSEGEFGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 392 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNA 451
           FEDAR LPWRVNRWYKEEPILVV DRSR+EVVAGDGFYL    +GGGDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL----MGGGDGGGDLKVERGNA 420

Query: 452 LMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
           LMEM VKESLGTVLLVVRPP+E EDDQLSDEDWD
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQLSDEDWD 450

[Close]

BLAST of Clc06G10270 vs. ExPASy TrEMBL
Match: A0A6J1F451 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439956 PE=4 SV=1)

HSP 1 Score: 668.3 bits (1723), Expect = 2.4e-188
Identity = 361/455 (79.34%), Postives = 394/455 (86.59%), Query Frame = 0


Query: 35  STTTTANSLTSLSAAAHTTAIF-LHPPLDSSLRLFLRRRPNPISAIIN--PSPSPLAAKQ 94
           S T  A SL+  +AAAHTT  F LH P    LRLFLRR PNPISA +N  PSPSPL AK 
Sbjct: 3   SATAPATSLS--AAAAHTTTTFLLHTP---PLRLFLRRPPNPISASLNPSPSPSPLVAKP 62

Query: 95  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 154
           QVYQPFRPPPSPLPSQYRSLDA GKL+VL+NRLGLWFEYAPLISSLIQEGFTP T+EEIT
Sbjct: 63  QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 122

Query: 155 GISGVQQNIFVVGAQVRDSLVQS-NNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKY 214
           GI GVQQN  VVGAQVR+SLVQ+ N++DPD+IAAFDT GAELLYEIRLL+ EKRAAAA+Y
Sbjct: 123 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 182

Query: 215 IVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERR 274
           IVENRLD KGAQDLARAMKDFPRRRG+KGWESF+YD PGDCLAFM+YRLSREY+N SE R
Sbjct: 183 IVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 242

Query: 275 TAALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTV 334
           TAALE+ALKV VT++AR LIV DLE +G+GK+  EEEI A VRVPVVRLKIGEVAEATTV
Sbjct: 243 TAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEIEAGVRVPVVRLKIGEVAEATTV 302

Query: 335 VVMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVV 394
           VV+PVC   +G  GVGEAPMEVRSEGEFGVVVAE+ W RWVVLP WEP+AGL K GGVVV
Sbjct: 303 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGK-GGVVV 362

Query: 395 AFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGN 454
           AF+DARALPWRVNRWYKEE ILVV DRSRKEV AGDGFYLT AT  G D  GELKV+RG+
Sbjct: 363 AFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGAT--GSD--GELKVQRGS 422

Query: 455 ALMEMEVKESLGTVLLVVRPPKEMEDDQLSDEDWD 486
            LMEM +KESLGTVLLVVRPPK+M+DDQLSDEDWD
Sbjct: 423 ELMEMGLKESLGTVLLVVRPPKDMDDDQLSDEDWD 447

[Close]

BLAST of Clc06G10270 vs. TAIR 10
Match: AT5G28500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 439.1 bits (1128), Expect = 4.6e-123
Identity = 251/456 (55.04%), Postives = 322/456 (70.61%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 331
             LE+AL+  VT+KA+  ++ +L G+ + +   EEEI   +RVPVVRL+ GEVA A++VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KIIRVPVVRLRFGEVAGASSVV 300

Query: 332 VMPVCKAGKGEIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 391
           V+PVCKA +GE  + EAPME  S GEFGVV AEK+WSRWVVLP W+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 392 FEDAR-ALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGN 451
           F D R  LPW      K E I+VV+DR +K V A +G+Y      GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 452 ALMEMEVKESLGTVLLVVRPPKEMEDD-QLSDEDWD 486
            L E  V ESLG V+LVVRPP++ +D+ Q++DEDWD
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDEWQINDEDWD 434

[Close]

BLAST of Clc06G10270 vs. TAIR 10
Match: AT3G04550.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 438.0 bits (1125), Expect = 1.0e-122
Identity = 238/445 (53.48%), Postives = 315/445 (70.79%), Query Frame = 0


Query: 52  TTAIFLHP------PLDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLP 111
           T  +F +P      PL  ++   +     P  +  N  P    A+QQ+YQPFRPP SP+P
Sbjct: 17  THGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLYQPFRPPSSPIP 76

Query: 112 SQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGA 171
           +Q+RSLD+ GK+ +L+ R+ LWFEYAPLISSL  +GFTP T+EE+TGIS ++QN  +VGA
Sbjct: 77  TQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGISSIEQNRLIVGA 136

Query: 172 QVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLA 231
           QVRDS++QS + +P++I+AFDT GAELLYEIRLLST +R AAA +I++  +DSKGAQDLA
Sbjct: 137 QVRDSILQSIH-EPELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLA 196

Query: 232 RAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDK 291
           RA+KD+P RRG+ GW  FDY+ PGDCL+F+YYR SRE  N S++RT+ L +AL V  ++K
Sbjct: 197 RAIKDYPNRRGDVGWLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSMLLQALGVAESEK 256

Query: 292 ARDL----IVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKG 351
           A++     + GD E + + ++  +EE   A+R+PVVRLK GEVAEAT+VVV+PVCKA +G
Sbjct: 257 AKNRLNTELYGDKEAEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSVVVLPVCKAEEG 316

Query: 352 EIGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWR 411
           E  + EAPME+ + G+F VV AEK W RWVVLP+W PVA + KGG  V   +D + LPW 
Sbjct: 317 EKKILEAPMEIIAGGDFKVVEAEKGWKRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD 376

Query: 412 VNRWYKEEPILVVVDRSRKEVVAGDGFYLTEATVGGGDGGGELKVERGNALMEMEVKESL 471
                KEEP+LVV DR R  V A DG+YL  A  G       LK+E+G+ L   EVKESL
Sbjct: 377 ----GKEEPLLVVADRVRNVVEADDGYYLVVAENG-------LKLEKGSDLKAREVKESL 436

Query: 472 GTVLLVVRPPKEMEDD-QLSDEDWD 486
           G V+LVVRPP+E +DD Q S ++WD
Sbjct: 437 GMVVLVVRPPREDDDDWQTSHQNWD 449

[Close]

BLAST of Clc06G10270 vs. TAIR 10
Match: AT5G28500.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1). )

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-74
Identity = 153/275 (55.64%), Postives = 199/275 (72.36%), Query Frame = 0


Query: 32  MLSSTTTTANSLTSLSAAAHTTAIFLHPPLDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 91
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 92  QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 151
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 152 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 211
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 212 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 271
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 272 AALEEALKVVVTDKARDLIVGDLEGKGDGKEGDEE 307
             LE+AL+  VT+KA+  ++ +L G+ + + G E+
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERGKED 266

The following BLAST results are available for this feature:

BLAST of Clc06G10270 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28779.1	1.0e-225	89.65	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_008462710.1	2.3e-225	89.43	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]
KAA0062559.1	6.6e-225	89.43	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_038880540.1	1.9e-224	90.47	rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida]	[more]
XP_004142574.1	7.6e-221	88.11	rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hyp...	[more]

BLAST of Clc06G10270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LKR8	6.4e-122	55.04	Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SR19	1.4e-121	53.48	Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q7XDY9	8.8e-95	48.92	Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=...	[more]
B4FR29	7.7e-91	44.19	Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV...	[more]
Q8YLP6	3.6e-24	28.75	RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX ...	[more]

BLAST of Clc06G10270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZE4	5.0e-226	89.65	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CHL8	1.1e-225	89.43	rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A5A7VA63	3.2e-225	89.43	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0LY43	3.7e-221	88.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1	[more]
A0A6J1F451	2.4e-188	79.34	rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=366...	[more]

BLAST of Clc06G10270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28500.1	4.6e-123	55.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G04550.1	1.0e-122	53.48	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G28500.2	1.3e-74	55.64	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040858	Rubisco accumulation factor 1, C-terminal	PFAM	PF18087	RuBisCo_chap_C	coord: 314..472 e-value: 2.5E-32 score: 111.4
IPR040781	Rubisco accumulation factor 1, helix turn helix domain	PFAM	PF18579	Raf1_HTH	coord: 112..172 e-value: 2.0E-22 score: 78.6
IPR041358	Rubisco accumulation factor 1, alpha helical domain	PFAM	PF18578	Raf1_N	coord: 185..291 e-value: 6.9E-36 score: 123.0
None	No IPR available	PANTHER	PTHR35299:SF3	RUBISCO ACCUMULATION FACTOR 1.2, CHLOROPLASTIC	coord: 32..485
IPR037494	Rubisco accumulation factor 1	PANTHER	PTHR35299	FAMILY NOT NAMED	coord: 32..485

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10270.2	Clc06G10270.2	mRNA