Clc06G10200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Altered inheritance of mitochondria protein
Location	ClcChr06: 14932546 .. 14933395 (-)
RNA-Seq Expression	Clc06G10200
Synteny	Clc06G10200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGCCACACTAGGATAGAGACACGGCCTGTACTCGCACGAGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCAAGCAATATCGCATGAGTGAAGAAGGGCAATGTCGCTTGTAAAGCTCTTTTATCGAGTGCGAGATCATGACAAGACTCGAGGAAGAAGCCCCGCTAACTCTGTGTCAGCAGTCGCAGTAAGACCAGGGGGGGAAGGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGTACATAGGCGGTGAATCAGGTTGAAAGTGAAAGTCGCCCAAAACTGGTGGAATGCTCTCGAAATCCATTCACTTGAGAGTGGAATTTTGTGTGTAGGGGTGAAATCCAGAGATCTACGAAGGAACGCCAAAAGCGAAGGTAGCTCTCTAGGTCCCTACCGACGCTGGGGTGCAAAAGCAAGGGGAACGAACGGGATTAGATACCCAAGTAGTCCATGCCGTAAACGATGAGTGTTCACCCTTGGTCTTCATGGATGAGGGGCCTAGCTAACGCATGAAACACTCCTCCTGAGGAGTACGATCACAAGACCGAAACTTAAACGAATTGACAGGGCCCTGCACAAGCAGTGGAGCATGTGCTTTAATTCGATACAACGCACAAAACCTTACCAGCCCTTGACATATGAACAACAAAACCTGTCCTTCACAAGATGGTACTGACTTTCATACAGGTGCTACATGGCTGTTGTCAGCTCGTGTCGTGATATGTTTGGTGAAGTTCTATAACGAACGAAACCCTTCTTTTGTGTTGCTGAGACATGCGACTAAGGAGAAAGTCTTTGCAATCGAAGTTCGCCAAGGAGCCGAGTGA

mRNA sequence

ATGATCAGCCACACTAGGATAGAGACACGGCCTGTACTCGCACGAGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCAAGCAATATCGCATGAGTGAAGAAGGGCAATGTCGCTTTCGCAGTAAGACCAGGGGGGGAAGGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGTACATAGGCGGTGAATCAGGGGTGAAATCCAGAGATCTACGAAGGAACGCCAAAAGCGAAGGTAGCTCTCTAGGTCCCTACCGACGCTGGGGTGCAAAAGCAAGGGGAACGAACGGGATTAGATACCCAAGTAGTCCATGCCGTGCTACATGGCTGTTGTCAGCTCGTGTCGTGATATGTTTGGTGAAGTTCTATAACGAACGAAACCCTTCTTTTGTGTTGCTGAGACATGCGACTAAGGAGAAAGTCTTTGCAATCGAAGTTCGCCAAGGAGCCGAGTGA

Coding sequence (CDS)

ATGATCAGCCACACTAGGATAGAGACACGGCCTGTACTCGCACGAGGGGGCAGCAGTGGGGAATCTTGGACAATGGGCGAAAGCCCGATCAAGCAATATCGCATGAGTGAAGAAGGGCAATGTCGCTTTCGCAGTAAGACCAGGGGGGGAAGGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGTACATAGGCGGTGAATCAGGGGTGAAATCCAGAGATCTACGAAGGAACGCCAAAAGCGAAGGTAGCTCTCTAGGTCCCTACCGACGCTGGGGTGCAAAAGCAAGGGGAACGAACGGGATTAGATACCCAAGTAGTCCATGCCGTGCTACATGGCTGTTGTCAGCTCGTGTCGTGATATGTTTGGTGAAGTTCTATAACGAACGAAACCCTTCTTTTGTGTTGCTGAGACATGCGACTAAGGAGAAAGTCTTTGCAATCGAAGTTCGCCAAGGAGCCGAGTGA

Protein sequence

MISHTRIETRPVLARGGSSGESWTMGESPIKQYRMSEEGQCRFRSKTRGGRQVFFEMTGRKGYIGGESGVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSPCRATWLLSARVVICLVKFYNERNPSFVLLRHATKEKVFAIEVRQGAE

Homology

[Close]

BLAST of Clc06G10200 vs. NCBI nr
Match: PNY14921.1 (ribosomal protein S10 [Trifolium pratense])

HSP 1 Score: 161.8 bits (408), Expect = 4.8e-36
Identity = 83/103 (80.58%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 48  RGGRQVFFEMTGRKGYIGGESGVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSS 107
           R G QVFF MTGRKG++G   GVKS DLRRNAKSEGSSLGPYRRW AKA G NGIRYP S
Sbjct: 19  RRGGQVFFGMTGRKGHVG---GVKSADLRRNAKSEGSSLGPYRRWSAKAWGANGIRYPGS 78

Query: 108 PCRATWLLSARVVICLVKFYNERNPSFVLLRHATKEKVFAIEV 151
           PCRA WL SARVV CLVK YNERNP FVLLRHA KEKVFA EV
Sbjct: 79  PCRAAWLSSARVVRCLVKSYNERNPRFVLLRHAPKEKVFATEV 118

[Close]

BLAST of Clc06G10200 vs. NCBI nr
Match: GEW78776.1 (ribosomal protein S10 [Tanacetum cinerariifolium])

HSP 1 Score: 141.0 bits (354), Expect = 8.8e-30
Identity = 70/87 (80.46%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 69  GVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSPCRATWLLSARVVICLVKFYN 128
           GVK  ++RRNAKSEGSSLGPYRRWGAKA G N IRYP SPCRA WL SARVV CLVK YN
Sbjct: 20  GVKFVNIRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRAAWLSSARVVRCLVKSYN 79

Query: 129 ERNPSFVLLRHATKEKVFAIEVRQGAE 156
           ERNP FVLLRHA KEKVFA EV +GAE
Sbjct: 80  ERNPRFVLLRHAPKEKVFAAEVSRGAE 106

[Close]

BLAST of Clc06G10200 vs. NCBI nr
Match: GEY54439.1 (ribosomal protein S10 [Tanacetum cinerariifolium])

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-28
Identity = 68/87 (78.16%), Postives = 72/87 (82.76%), Query Frame = 0


Query: 69  GVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSPCRATWLLSARVVICLVKFYN 128
           GVKS ++RRNAKSEG SLGPYRRWGAKA G N IRYP SPCRA WL SA VV CLVK YN
Sbjct: 20  GVKSVNIRRNAKSEGISLGPYRRWGAKAWGANRIRYPGSPCRAAWLSSAHVVRCLVKSYN 79

Query: 129 ERNPSFVLLRHATKEKVFAIEVRQGAE 156
           ERNP FVLLRHA K+KVFA EV +GAE
Sbjct: 80  ERNPLFVLLRHAPKKKVFAAEVSRGAE 106

[Close]

BLAST of Clc06G10200 vs. NCBI nr
Match: GFA98036.1 (ribosomal protein S10 [Tanacetum cinerariifolium])

HSP 1 Score: 134.4 bits (337), Expect = 8.3e-28
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 70  VKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSPCRATWLLSARVVICLVKFYNE 129
           VKS ++RRNAKSEGSSLGPYRRWGAKA G N IRYP SPCRA WL SARVV CLVK YNE
Sbjct: 1   VKSVNIRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCRAAWLSSARVVRCLVKSYNE 60

Query: 130 RNPSFVLLRHATKEKVFAIEV 151
           RNP FVLLRHA KEKVFA E+
Sbjct: 61  RNPRFVLLRHAPKEKVFAAEL 81

[Close]

BLAST of Clc06G10200 vs. NCBI nr
Match: CAA7039585.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 64/76 (84.21%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 69  GVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSPCRATWLLSARVVICLVKFYN 128
           GVKS DLRRNAKSEGSSLG YRRWGAKA G NGIRYP SPCRA WL SARVV CLVK YN
Sbjct: 15  GVKSTDLRRNAKSEGSSLGLYRRWGAKAWGANGIRYPGSPCRAAWLSSARVVRCLVKSYN 74

Query: 129 ERNPSFVLLRHATKEK 145
           ERNP  VLLRHA KEK
Sbjct: 75  ERNPRLVLLRHAPKEK 90

[Close]

BLAST of Clc06G10200 vs. ExPASy TrEMBL
Match: A0A2N9GHW4 (Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26892 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 83/103 (80.58%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 48  RGGRQVFFEMTGRKGYIGGESGVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSS 107
           R G QVFF MTGR+G++G   GVKSRDLRRNAKSEGSSLGPYRRW AKA G NGIRYP S
Sbjct: 19  RRGGQVFFGMTGRQGHVG---GVKSRDLRRNAKSEGSSLGPYRRWSAKAWGANGIRYPGS 78

Query: 108 PCRATWLLSARVVICLVKFYNERNPSFVLLRHATKEKVFAIEV 151
           PCRA WL SARVV CLVK YNERNP FVLLRHA KEKVFA EV
Sbjct: 79  PCRAAWLSSARVVRCLVKSYNERNPRFVLLRHAPKEKVFATEV 118

[Close]

BLAST of Clc06G10200 vs. ExPASy TrEMBL
Match: A0A2K3PI15 (Uncharacterized protein ycf68 OS=Trifolium pratense OX=57577 GN=L195_g011610 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36
Identity = 83/103 (80.58%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 48  RGGRQVFFEMTGRKGYIGGESGVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSS 107
           R G QVFF MTGRKG++G   GVKS DLRRNAKSEGSSLGPYRRW AKA G NGIRYP S
Sbjct: 19  RRGGQVFFGMTGRKGHVG---GVKSADLRRNAKSEGSSLGPYRRWSAKAWGANGIRYPGS 78

Query: 108 PCRATWLLSARVVICLVKFYNERNPSFVLLRHATKEKVFAIEV 151
           PCRA WL SARVV CLVK YNERNP FVLLRHA KEKVFA EV
Sbjct: 79  PCRAAWLSSARVVRCLVKSYNERNPRFVLLRHAPKEKVFATEV 118

[Close]

BLAST of Clc06G10200 vs. ExPASy TrEMBL
Match: A0A6D2JF37 (Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS26820 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 64/76 (84.21%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 69  GVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSPCRATWLLSARVVICLVKFYN 128
           GVKS DLRRNAKSEGSSLG YRRWGAKA G NGIRYP SPCRA WL SARVV CLVK YN
Sbjct: 15  GVKSTDLRRNAKSEGSSLGLYRRWGAKAWGANGIRYPGSPCRAAWLSSARVVRCLVKSYN 74

Query: 129 ERNPSFVLLRHATKEK 145
           ERNP  VLLRHA KEK
Sbjct: 75  ERNPRLVLLRHAPKEK 90

[Close]

BLAST of Clc06G10200 vs. ExPASy TrEMBL
Match: A0A2I0HIY1 (Uncharacterized protein ycf68 OS=Punica granatum OX=22663 GN=CRG98_047964 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.9e-26
Identity = 67/82 (81.71%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 69  GVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSPCRATWLLSARVVICLVKFYN 128
           GVKS DLRRNAKSEGSSLGPYRRWGAKA G NGIRYP     A WL SARVV CLVK YN
Sbjct: 20  GVKSGDLRRNAKSEGSSLGPYRRWGAKAWGANGIRYPG----AAWLSSARVVRCLVKSYN 79

Query: 129 ERNPSFVLLRHATKEKVFAIEV 151
           ERNP FVLLRHA KEKVFA EV
Sbjct: 80  ERNPRFVLLRHAPKEKVFATEV 97

[Close]

BLAST of Clc06G10200 vs. ExPASy TrEMBL
Match: W9RSV7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004636 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.2e-21
Identity = 60/82 (73.17%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 69  GVKSRDLRRNAKSEGSSLGPYRRWGAKARGTNGIRYPSSP-----CRATWLLSARVVICL 128
           GVKS DLRRNAKSEGSSLGPYRRW AKA G NGIR P          A WL SARVV CL
Sbjct: 26  GVKSGDLRRNAKSEGSSLGPYRRWSAKAWGANGIRSPEGANGIRYPGAAWLSSARVVRCL 85

Query: 129 VKFYNERNPSFVLLRHATKEKV 146
           VK YNERNP FVLLRHA KE V
Sbjct: 86  VKSYNERNPRFVLLRHAPKEMV 107

The following BLAST results are available for this feature:

BLAST of Clc06G10200 vs. NCBI nr


Match Name	E-value	Identity	Description
PNY14921.1	4.8e-36	80.58	ribosomal protein S10 [Trifolium pratense]	[more]
GEW78776.1	8.8e-30	80.46	ribosomal protein S10 [Tanacetum cinerariifolium]	[more]
GEY54439.1	1.3e-28	78.16	ribosomal protein S10 [Tanacetum cinerariifolium]	[more]
GFA98036.1	8.3e-28	81.48	ribosomal protein S10 [Tanacetum cinerariifolium]	[more]
CAA7039585.1	2.7e-26	84.21	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of Clc06G10200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc06G10200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9GHW4	1.4e-36	80.58	Uncharacterized protein ycf68 OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS26892 PE=3...	[more]
A0A2K3PI15	2.3e-36	80.58	Uncharacterized protein ycf68 OS=Trifolium pratense OX=57577 GN=L195_g011610 PE=...	[more]
A0A6D2JF37	1.3e-26	84.21	Uncharacterized protein ycf68 OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS...	[more]
A0A2I0HIY1	2.9e-26	81.71	Uncharacterized protein ycf68 OS=Punica granatum OX=22663 GN=CRG98_047964 PE=3 S...	[more]
W9RSV7	6.2e-21	73.17	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_004636 PE=4 SV=1	[more]

BLAST of Clc06G10200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10200.1	Clc06G10200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0015078	proton transmembrane transporter activity