
Clc06G10170 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCCAAACAATTGCAAGCACCATTCAAAGCCAAGGTAAGACACTTCAAAACTTGGAGGTTCAACTTAGTCAAATGGCAACTTCCCTCCAAACAATGCAAAAGGGTAAGTTCCCTAGTTGTCACGAGATAAACCCAAGGGAGGAGTGCAAGGCCGTGACTCTGAGGAGTGGGAAAAAGCTATCCACTCCCTTGATCAATGATGAAGATGATGAGCTTCAGCAAGAAGAAGATGAAGCCATCATAGAGGATGTTCAACAAAAAGAGAGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGAGTACTTCTAACTCTACTTCTTTTATCCCTAACACTTTACCTTTTCCTAAAAAATTTCAAAAGAAAAAGATTGATGCTCAATTTTCAAAGTTCTTAGACATACTCAAAAAGTTAGAAATTAAGTCCTTGGGAGACCATTCTTGGCCACCGGAAGGGCCTTCATCGATGTGCAAGATGGAAAGCTCACATTCCGCCTTAACGATGAGGAGGTAACATTCGACATTTATAAAACCCTTAAGCATCCGGATGTAGAAAGGTATGACCATCGTGAGCCAAGCACAAAGGTAACATCGCCTCTCTCTTCGAATAAAAACTCTATGCATGATAAGCCTCCTTTGAATGGTAAGACTAATAGCATGCTTGATGTTAAATTAAAAAATCCTATAAAGCATGATTTTAGTTGTGATAATTCTCCTAGTTCTTCTTGCATGCGTCCCAAACCTATAATGAATTATGAACAAATTATGGAGAAGCATGATAAAATTGAAGTGATGAGTCCAAAAAAATCTAAGCATGATGATTCTTTAACGAGTCTTGACTACATTAGTAAAGATGATGTCCAACTTGATAATGAATTGTTGACTAACTCACTAAATACTAATGAATATGTTTGTGAGTGTCAATGTGCGCGAATACTAAAAGTTGTAGGTGAATCAAAGCATAAAAGGAAGAAACCACCTTGGGATCCACCCTGATTCGTGAGCCCCTTCTAGCTAGAAGACGTTAAACCAAACGCTTATTGGGAGGCAACCCAATTTTATTGCTTTCTTTACTTTTCTTTTTATTTTATTTTCAATAAATCTTGGAGTCACTCATATGCTTTATCTCTTAGGAACTTGGTTTATCACACAAAGTACTCCTTACAACCAAGCCTGTTTGGTGGCTTCCCGCTTGCTCCCAGGCTTGCTCTTTCCTTGTTAGATGCTCTTATGCATGGGACAATGCATGATTCTAAGTTCGGAATGGGAGGTGTCTCTCGTACTTTTGTGTGTTTTCTCATCCTGCTATGCATGTTTGTGAAGGTTTTAATGATCATATGCATGTCAATTTTTGAAAAATTTTGAAAATTTTGGAGCTTTCAAAGTTAATGGAAATGTTGCTTATGGTTGTATGCCTTGATGTTGATTGCCCATGATGAGATTCGAATTTGCATGATAGATGACTTATTGTGGAAATAGAATAGCACTATCTTGAGTTAAATTCATTTAAGTCCCTCTTAAAATCTCTCATATTCTTGAGCATGTAGCCACTTTAATTTAGAATCTTTAACTGAAAAAAGGATTAAGTTGGTGCCTTGAGAAAAAAAAGAAAGTGTACACAAAATGTATGAGCTTTATTTGTCTATCTTTTTAAATGTTAAACTTGTAATGAGTATGCATGGATAAGGGTAAAAAGAGCTGCCTTTGCTGTGATCAGTAAGGACGCCTGGGAATTGACTAGGTACAAGTCGCTACAGTGAATGTGTGAAAGCTAGTGCCTCTAGGTAAAAGAATGCAAGTTTGGGCCCTGATGCGCACTTTTAGTGTTAACTGCAAGTGTACGGGTCAAGTTATAATATAAGACGGTAAAGTCCGAATATCGTTCCACTGGAGATCCAATTGTGAAGGTTTAAGTTACTTAGCTATTCTAGAATTGAATCAATTTTATTTGAGGATTGGAATTGAAGTTGTTAATAATGGAAAATATAAACCAAATAAGGAAAGTAATAAAGTGATAAACACAAGAGTCAAAGAGAGTTCTAGGGTAATGAATCCTTGTTTATTTCATCATGTAATATTTAGATTTCATGGACTTTATTGTAATTCATAGACCTACATTTAGAAACTTAATTCCAAGTTATTTTCTCTAAAAAACAACTCTTTCTCATGCAACTCAATTGATTACTAATCTCTTGAAACCAATACAAATTACATGGCATTAAGAATAGTCTTTAGCAACTTTTATTGTCAACCTAACTACTCTCGTGATAGATTAACAACAATTCATTGTTATAGATCAAGTTAAACATACAATCTCTCAATCATACATCTAACCTAACATGTGAAGATGGCCAATCCACAAGAATTAAACACAATAACAATGAAAAGCATAATCATTCCAAAAAAATCATGAAAGTCTACAATATCAACATATATTCATAAACAATTCATCAAAACCCTAAAATTAAAGAGTTTAGCCACTCATAGCTTGAAGCAACATGTTTAAGCAAAAGAAACAAAGAAAGAGTGTAAAGAAAAGGAAACTCTACTGAAAAGAGGCTCTTGATTGAGGTAGCACCGTCACAATCTCCTTGGCTCTCACGTTGAAATTCGAAGAGCACCACGACTATCTCGAACTCTTTTCCTCTTCCTTGCACCAAACTCACTCTTTGAACTCTTTTATGAACTCTCACTCAATTCTCTCCTTTTTGTGCCTCTTTAGGTCTGTAAATTGATGGTTGATTGATTCTTGATTTGATTTTTATGATTAGGGCTGCTGGAAGTCCCCAGATTTATAGAGTTGGCTGCCCAAAAATTTATCAAAAATAACAATTTTTCATTTAAGGAAAACTGGCGCCGTGGCGCTAGGGTTGTGTCCAAAATTGTTGTTCTCGGGTTTTAGCGCCGCGGCAGTGCCGTCCAAGCGTTGTGTGCTATGATGCGTTCAGAATGTTGCATTGGATTTTGGCATCGCGGCAACGCCATCTCGGTGCCACGATGCTAAGATGAGTCCAGAACGTTGCGTTTGGGTTTTAGCACCGCGGCAGCGCCATCCAGGCGTCGCGGGCTATCCCAAATTTTGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCATATTCTTGCTCAGTTTTGATCTTTTAG ATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCCAAACAATTGCAAGCACCATTCAAAGCCAAGGTAAGACACTTCAAAACTTGGAGGTTCAACTTAGTCAAATGGCAACTTCCCTCCAAACAATGCAAAAGGGTAAGTTCCCTAGTTGTCACGAGATAAACCCAAGGGAGGAGTGCAAGGCCGTGACTCTGAGGAGTGGGAAAAAGCTATCCACTCCCTTGATCAATGATGAAGATGATGAGCTTCAGCAAGAAGAAGATGAAGCCATCATAGAGGATGTTCAACAAAAAGAGAGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGAGTACTTCTAACTCTACTTCTTTTATCCCTAACACTTTACCTTTTCCTAAAAAATTTCAAAAGAAAAAGATTGATGCTCAATTTTCAAAGTTCTTAGACATACTCAAAAAGTTAGAAATTAAGTCCTTGGGAGACCATTCTTGGCCACCGGAAGGGCCTTCATCGATGTGCAAGATGGAAAGCTCACATTCCGCCTTAACGATGAGGAGGAACTTGGTTTATCACACAAAGTACTCCTTACAACCAAGCCTGTTTGGTGGCTTCCCGCTTGCTCCCAGGCTTGCTCTTTCCTTGTTAGATGCTCTTATGCATGGGACAATGCATGATTCTAAGTTCGGAATGGGAGGTGTCTCTCGTACTTTTGTGTGTTTTCTCATCCTGCTATGCATGTTTGTGAAGAATGTTGCATTGGATTTTGGCATCGCGGCAACGCCATCTCGGTGCCACGATGCTAAGATGAGTCCAGAACGTTGCGTTTGGGTTTTAGCACCGCGGCAGCGCCATCCAGGCGTCGCGGGCTATCCCAAATTTTGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCATATTCTTGCTCAGTTTTGATCTTTTAG ATGCTTGACTTTGTCAAAGAGTCAAGATCAAGGACAACCACATTGGAGAATTCGGTCCAAACAATTGCAAGCACCATTCAAAGCCAAGGTAAGACACTTCAAAACTTGGAGGTTCAACTTAGTCAAATGGCAACTTCCCTCCAAACAATGCAAAAGGGTAAGTTCCCTAGTTGTCACGAGATAAACCCAAGGGAGGAGTGCAAGGCCGTGACTCTGAGGAGTGGGAAAAAGCTATCCACTCCCTTGATCAATGATGAAGATGATGAGCTTCAGCAAGAAGAAGATGAAGCCATCATAGAGGATGTTCAACAAAAAGAGAGTGCATCTAAGGAAAAGGAGAAATCAAAGTCCAACATAGGGAGTACTTCTAACTCTACTTCTTTTATCCCTAACACTTTACCTTTTCCTAAAAAATTTCAAAAGAAAAAGATTGATGCTCAATTTTCAAAGTTCTTAGACATACTCAAAAAGTTAGAAATTAAGTCCTTGGGAGACCATTCTTGGCCACCGGAAGGGCCTTCATCGATGTGCAAGATGGAAAGCTCACATTCCGCCTTAACGATGAGGAGGAACTTGGTTTATCACACAAAGTACTCCTTACAACCAAGCCTGTTTGGTGGCTTCCCGCTTGCTCCCAGGCTTGCTCTTTCCTTGTTAGATGCTCTTATGCATGGGACAATGCATGATTCTAAGTTCGGAATGGGAGGTGTCTCTCGTACTTTTGTGTGTTTTCTCATCCTGCTATGCATGTTTGTGAAGAATGTTGCATTGGATTTTGGCATCGCGGCAACGCCATCTCGGTGCCACGATGCTAAGATGAGTCCAGAACGTTGCGTTTGGGTTTTAGCACCGCGGCAGCGCCATCCAGGCGTCGCGGGCTATCCCAAATTTTGCCCTTTTGAGTTTTTCAGCTCTTTTTCGCCATATTCTTGCTCAGTTTTGATCTTTTAG MLDFVKESRSRTTTLENSVQTIASTIQSQGKTLQNLEVQLSQMATSLQTMQKGKFPSCHEINPREECKAVTLRSGKKLSTPLINDEDDELQQEEDEAIIEDVQQKESASKEKEKSKSNIGSTSNSTSFIPNTLPFPKKFQKKKIDAQFSKFLDILKKLEIKSLGDHSWPPEGPSSMCKMESSHSALTMRRNLVYHTKYSLQPSLFGGFPLAPRLALSLLDALMHGTMHDSKFGMGGVSRTFVCFLILLCMFVKNVALDFGIAATPSRCHDAKMSPERCVWVLAPRQRHPGVAGYPKFCPFEFFSSFSPYSCSVLIF Homology
BLAST of Clc06G10170 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 155.6 bits (392), Expect = 7.1e-34 Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 0
BLAST of Clc06G10170 vs. NCBI nr
Match: WP_217833143.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 123.6 bits (309), Expect = 3.0e-24 Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 0
BLAST of Clc06G10170 vs. NCBI nr
Match: WP_217833170.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002]) HSP 1 Score: 122.9 bits (307), Expect = 5.1e-24 Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 0
BLAST of Clc06G10170 vs. NCBI nr
Match: KAG7947748.1 (hypothetical protein I3843_14G109500 [Carya illinoinensis]) HSP 1 Score: 105.1 bits (261), Expect = 1.1e-18 Identity = 65/169 (38.46%), Postives = 98/169 (57.99%), Query Frame = 0
BLAST of Clc06G10170 vs. NCBI nr
Match: KAG6734747.1 (hypothetical protein I3842_01G285500 [Carya illinoinensis]) HSP 1 Score: 105.1 bits (261), Expect = 1.1e-18 Identity = 65/169 (38.46%), Postives = 98/169 (57.99%), Query Frame = 0
BLAST of Clc06G10170 vs. ExPASy TrEMBL
Match: A0A1J6ICW1 (Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_60849 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 3.6e-15 Identity = 59/136 (43.38%), Postives = 87/136 (63.97%), Query Frame = 0
BLAST of Clc06G10170 vs. ExPASy TrEMBL
Match: A0A314KJN0 (Uncharacterized protein (Fragment) OS=Nicotiana attenuata OX=49451 GN=A4A49_27622 PE=4 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 1.4e-14 Identity = 57/135 (42.22%), Postives = 85/135 (62.96%), Query Frame = 0
BLAST of Clc06G10170 vs. ExPASy TrEMBL
Match: A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 3.9e-14 Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 0
BLAST of Clc06G10170 vs. ExPASy TrEMBL
Match: A0A2P5BPI6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_313500 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 3.9e-14 Identity = 56/157 (35.67%), Postives = 92/157 (58.60%), Query Frame = 0
BLAST of Clc06G10170 vs. ExPASy TrEMBL
Match: A0A1S4A646 (uncharacterized protein LOC107794097 OS=Nicotiana tabacum OX=4097 GN=LOC107794097 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13 Identity = 55/135 (40.74%), Postives = 83/135 (61.48%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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