Clc06G10145 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10145
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal protein S19
Location	ClcChr06: 14734861 .. 14735778 (+)
RNA-Seq Expression	Clc06G10145
Synteny	Clc06G10145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAGATCTGGCAATAGCACGCGACAAAGGACTCGAGATGACGACAACGAGCAACGACGCGACGACCGACGATTGAGAAAATGGCAACAGACCTGCTGGACCTGTTGCTTTGCGTGTACAACGATGGTGGGGATCATGATTCGCGTGGATGGCGACGAGAACGGGTGGTGTGGTGGTCGACAGAGACAAATAGCGAGCGGCTGACCAAGAGATGAAGGAAATGGAGAAGACGCATCTGCTGCCTACCGAACAAAAGAGATGAAGAAAAGGTTTCTGCTTTCTTTTTTTCTTTTTTGCATGCAACATGGGACAACTAATTTATATATATTAAAAAAAACTTAAACCCTAATCACCTAACCCAATATATACATATATAATTTTGAGTAGGGGTGGGTAAAAGGAGAAATGAGTTCATGCCACGACGATCTATATGGAAAGGCAGTTTTGTTGATGCATTCCTATTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAATAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCTAGAATTTGTTGATAGCTTTTATACGAATTTACATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCGACGCGAAAATGAAGATTTTCGAGAACAAATATTAGACCGGGAAAAAAGGAGGGATAAAGTCAAGTCTAAGCGTATATGGCACGAAAAGGAAATCCGATTTCGCATTTCATATTCACTCTTTTTTATTCTCAAATCAAAAGTTTATAGTAAAATGAGATATCTGATTCTATCTGAATTAGACGAGCCGCCTTTAGCATTTCCATTTCGTGATTCAGATTCGGAGACGAATCCTTACATTCCTAAGAATCCGAAGAGGGGATCTCTCTCGATCTCGAATTGA

mRNA sequence

ATGTCCAGATCTGGCAATAGCACGCGACAAAGGACTCGAGATGACGACAACGAGCAACGACGCGACGACCGACGATTGAGAAAATGGCAACAGACCTGCTGGACCTGTTGCTTTGCGTGTACAACGATGGTGGGGATCATGATTCGCGTGGATGGCGACGAGAACGGAGATGAAGGAAATGGAGAAGACGCATCTGCTGCCTACCGAACAAAAGAGATGAAGAAAAGGAGAAATGAGTTCATGCCACGACGATCTATATGGAAAGGCAGTTTTGTTGATGCATTCCTATTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAATAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCTAGAATTTGTTGATAGCTTTTATACGAATTTACATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTTGATTTTCGAGAACAAATATTAGACCGGGAAAAAAGGAGGGATAAAGTCAAGTCTAAGCGTATATGGCACGAAAAGGAAATCCGATTTCGCATTTCATATTCACTCTTTTTTATTCTCAAATCAAAAGTTTATAGTAAAATGAGATATCTGATTCTATCTGAATTAGACGAGCCGCCTTTAGCATTTCCATTTCGTGATTCAGATTCGGAGACGAATCCTTACATTCCTAAGAATCCGAAGAGGGGATCTCTCTCGATCTCGAATTGA

Coding sequence (CDS)

ATGTCCAGATCTGGCAATAGCACGCGACAAAGGACTCGAGATGACGACAACGAGCAACGACGCGACGACCGACGATTGAGAAAATGGCAACAGACCTGCTGGACCTGTTGCTTTGCGTGTACAACGATGGTGGGGATCATGATTCGCGTGGATGGCGACGAGAACGGAGATGAAGGAAATGGAGAAGACGCATCTGCTGCCTACCGAACAAAAGAGATGAAGAAAAGGAGAAATGAGTTCATGCCACGACGATCTATATGGAAAGGCAGTTTTGTTGATGCATTCCTATTGAGAATGAAGAAGAAGAGAGATCCTCTTTTGAATAGGAAAATTTGGTCACGTAGATCTTCGATTTTGCTAGAATTTGTTGATAGCTTTTATACGAATTTACATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTTGATTTTCGAGAACAAATATTAGACCGGGAAAAAAGGAGGGATAAAGTCAAGTCTAAGCGTATATGGCACGAAAAGGAAATCCGATTTCGCATTTCATATTCACTCTTTTTTATTCTCAAATCAAAAGTTTATAGTAAAATGAGATATCTGATTCTATCTGAATTAGACGAGCCGCCTTTAGCATTTCCATTTCGTGATTCAGATTCGGAGACGAATCCTTACATTCCTAAGAATCCGAAGAGGGGATCTCTCTCGATCTCGAATTGA

Protein sequence

MSRSGNSTRQRTRDDDNEQRRDDRRLRKWQQTCWTCCFACTTMVGIMIRVDGDENGDEGNGEDASAAYRTKEMKKRRNEFMPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKIIEGRVDFREQILDREKRRDKVKSKRIWHEKEIRFRISYSLFFILKSKVYSKMRYLILSELDEPPLAFPFRDSDSETNPYIPKNPKRGSLSISN

Homology

[Close]

BLAST of Clc06G10145 vs. NCBI nr
Match: EXC22066.1 (Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis])

HSP 1 Score: 129.0 bits (323), Expect = 5.2e-26
Identity = 71/110 (64.55%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 75  KRRNEFMPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKT 134
           KRRNEFMPRRSIWKGSFVDAFLLRMKKK   LLNRKI SRRSSIL EFVD      +GKT
Sbjct: 169 KRRNEFMPRRSIWKGSFVDAFLLRMKKKISLLLNRKIGSRRSSILPEFVDCSVRIYNGKT 228

Query: 135 SVRCKIIEGRVDFREQIL--------DREKRRDKVKSKRIWHEKEIRFRI 177
            +RCKI E +V  +E +L        ++    +KVK KRIWHEKEIRFR+
Sbjct: 229 PLRCKITEEKVGHKESLLLHGNEDFREQGPEGEKVKKKRIWHEKEIRFRL 278

[Close]

BLAST of Clc06G10145 vs. NCBI nr
Match: YP_009565405.1 (ribosomal protein S19 [Morus notabilis] >QBB08762.1 ribosomal protein S19 [Morus notabilis])

HSP 1 Score: 116.3 bits (290), Expect = 3.5e-22
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKK   LLNRKI SRRSSIL EFVD      +GKT +RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKISLLLNRKIGSRRSSILPEFVDCSVRIYNGKTPLRCKI 60

Query: 141 IEGRVDFREQIL--------DREKRRDKVKSKRIWHEKEIRFR 176
            E +V  +E +L        ++    +KVK KRIWHEKEIRFR
Sbjct: 61  TEEKVGHKESLLLHGNEDFREQGPEGEKVKKKRIWHEKEIRFR 103

[Close]

BLAST of Clc06G10145 vs. NCBI nr
Match: YP_003587380.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-21
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSIL EFVDS     +GKT VRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 141 IEGRV--DFREQILDREKR 158
            EGRV   F E  L R++R
Sbjct: 61  TEGRVGHKFGEFALTRKRR 79

[Close]

BLAST of Clc06G10145 vs. NCBI nr
Match: YP_003587264.1 (ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-21
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSIL EFVDS     +GKT VRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 141 IEGRV--DFREQILDREKR 158
            EGRV   F E  L R++R
Sbjct: 61  TEGRVGHKFGEFALTRKRR 79

[Close]

BLAST of Clc06G10145 vs. NCBI nr
Match: YP_003587364.1 (ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-21
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSIL EFVDS     +GKT VRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 141 IEGRV--DFREQILDREKR 158
            EGRV   F E  L R++R
Sbjct: 61  TEGRVGHKFGEFALTRKRR 79

[Close]

BLAST of Clc06G10145 vs. ExPASy Swiss-Prot
Match: P27527 (Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 2.8e-22
Identity = 57/79 (72.15%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKKRD L NRKIWSRRSSIL EFVD F    +GKT VRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 141 IEGRV--DFREQILDREKR 158
            EG+V   F E    R++R
Sbjct: 61  TEGKVGHKFGEFAFTRKRR 79

[Close]

BLAST of Clc06G10145 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 71  KEMKKRRNEFMPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNL 130
           +E +K+ N+ M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+IL E+VDS     
Sbjct: 122 EEAEKKENKMM-SRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSAVRIY 181

Query: 131 HGKTSVRCKIIEGRV 146
           +GKT VRCKI EG+V
Sbjct: 182 NGKTHVRCKITEGKV 192

[Close]

BLAST of Clc06G10145 vs. ExPASy Swiss-Prot
Match: P26874 (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 PE=3 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 4.0e-05
Identity = 29/62 (46.77%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 84  RSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKIIEG 143
           RSIWKG FVD  L + KK     +  +IWSRRS IL +FV  +    +GK  V  KI E 
Sbjct: 3   RSIWKGPFVDTCLFKQKK-----IRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 59

Query: 144 RV 146
            V
Sbjct: 63  MV 59

[Close]

BLAST of Clc06G10145 vs. ExPASy Swiss-Prot
Match: A8LM58 (30S ribosomal protein S19 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=rpsS PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-04
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 84  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 143
           RS+WKG FVDA++L + +K R+   N   KIWSRRS+IL +FV   +   +G+  +   +
Sbjct: 3   RSVWKGPFVDAYVLKKAEKTRESGRNEVIKIWSRRSTILPQFVGLTFGVYNGRKHIPVNV 62

Query: 144 IEGRV 146
            E  +
Sbjct: 63  TEDMI 67

[Close]

BLAST of Clc06G10145 vs. ExPASy Swiss-Prot
Match: A3PGL5 (30S ribosomal protein S19 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) OX=349101 GN=rpsS PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-04
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 84  RSIWKGSFVDAFLL-RMKKKRDPLLNR--KIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 143
           RS WKG FVD +LL + +K R+   N   KIWSRRS+IL +FV   +   +GK  V   +
Sbjct: 3   RSTWKGPFVDGYLLKKAEKSRESGKNEVIKIWSRRSTILPQFVGLTFGVYNGKKHVPVNV 62

[Close]

BLAST of Clc06G10145 vs. ExPASy TrEMBL
Match: W9S278 (Alpha-1,4 glucan phosphorylase OS=Morus notabilis OX=981085 GN=L484_006649 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-26
Identity = 71/110 (64.55%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 75  KRRNEFMPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKT 134
           KRRNEFMPRRSIWKGSFVDAFLLRMKKK   LLNRKI SRRSSIL EFVD      +GKT
Sbjct: 169 KRRNEFMPRRSIWKGSFVDAFLLRMKKKISLLLNRKIGSRRSSILPEFVDCSVRIYNGKT 228

Query: 135 SVRCKIIEGRVDFREQIL--------DREKRRDKVKSKRIWHEKEIRFRI 177
            +RCKI E +V  +E +L        ++    +KVK KRIWHEKEIRFR+
Sbjct: 229 PLRCKITEEKVGHKESLLLHGNEDFREQGPEGEKVKKKRIWHEKEIRFRL 278

[Close]

BLAST of Clc06G10145 vs. ExPASy TrEMBL
Match: A0A411GRV0 (Ribosomal protein S19 OS=Morus notabilis OX=981085 GN=rps19 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-22
Identity = 65/103 (63.11%), Postives = 73/103 (70.87%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKK   LLNRKI SRRSSIL EFVD      +GKT +RCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKISLLLNRKIGSRRSSILPEFVDCSVRIYNGKTPLRCKI 60

Query: 141 IEGRVDFREQIL--------DREKRRDKVKSKRIWHEKEIRFR 176
            E +V  +E +L        ++    +KVK KRIWHEKEIRFR
Sbjct: 61  TEEKVGHKESLLLHGNEDFREQGPEGEKVKKKRIWHEKEIRFR 103

[Close]

BLAST of Clc06G10145 vs. ExPASy TrEMBL
Match: D5I3D4 (Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-22
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSIL EFVDS     +GKT VRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 141 IEGRV--DFREQILDREKR 158
            EGRV   F E  L R++R
Sbjct: 61  TEGRVGHKFGEFALTRKRR 79

[Close]

BLAST of Clc06G10145 vs. ExPASy TrEMBL
Match: D5I3F0 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-22
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSIL EFVDS     +GKT VRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 141 IEGRV--DFREQILDREKR 158
            EGRV   F E  L R++R
Sbjct: 61  TEGRVGHKFGEFALTRKRR 79

[Close]

BLAST of Clc06G10145 vs. ExPASy TrEMBL
Match: D5I3G6 (Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-22
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 81  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNLHGKTSVRCKI 140
           MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSIL EFVDS     +GKT VRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 141 IEGRV--DFREQILDREKR 158
            EGRV   F E  L R++R
Sbjct: 61  TEGRVGHKFGEFALTRKRR 79

[Close]

BLAST of Clc06G10145 vs. TAIR 10
Match: AT5G47320.1 (ribosomal protein S19 )

HSP 1 Score: 81.6 bits (200), Expect = 8.9e-16
Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 71  KEMKKRRNEFMPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILLEFVDSFYTNL 130
           +E +K+ N+ M  RS+WK  FVDAFL+   KK++  LNRKIWSRRS+IL E+VDS     
Sbjct: 122 EEAEKKENKMM-SRSVWKDPFVDAFLM---KKKNAALNRKIWSRRSTILPEYVDSAVRIY 181

Query: 131 HGKTSVRCKIIEGRV 146
           +GKT VRCKI EG+V
Sbjct: 182 NGKTHVRCKITEGKV 192

The following BLAST results are available for this feature:

BLAST of Clc06G10145 vs. NCBI nr


Match Name	E-value	Identity	Description
EXC22066.1	5.2e-26	64.55	Alpha-1,4 glucan phosphorylase L-2 isozyme [Morus notabilis]	[more]
YP_009565405.1	3.5e-22	63.11	ribosomal protein S19 [Morus notabilis] >QBB08762.1 ribosomal protein S19 [Morus...	[more]
YP_003587380.1	1.7e-21	77.22	ribosomal protein S19 [Cucurbita pepo] >ACV96694.1 ribosomal protein S19 [Cucurb...	[more]
YP_003587264.1	1.7e-21	77.22	ribosomal protein S19 [Citrullus lanatus] >ACV96651.1 ribosomal protein S19 [Cit...	[more]
YP_003587364.1	1.7e-21	77.22	ribosomal protein S19 [Cucurbita pepo] >ACV96693.1 ribosomal protein S19 [Cucurb...	[more]

BLAST of Clc06G10145 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27527	2.8e-22	72.15	Ribosomal protein S19, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS19 PE=2 SV...	[more]
P39697	1.3e-14	57.33	40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P26874	4.0e-05	46.77	Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS19 P...	[more]
A8LM58	1.2e-04	40.00	30S ribosomal protein S19 OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14...	[more]
A3PGL5	1.5e-04	45.16	30S ribosomal protein S19 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2....	[more]

BLAST of Clc06G10145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9S278	2.5e-26	64.55	Alpha-1,4 glucan phosphorylase OS=Morus notabilis OX=981085 GN=L484_006649 PE=3 ...	[more]
A0A411GRV0	1.7e-22	63.11	Ribosomal protein S19 OS=Morus notabilis OX=981085 GN=rps19 PE=3 SV=1	[more]
D5I3D4	8.4e-22	77.22	Ribosomal protein S19 OS=Citrullus lanatus OX=3654 GN=rps19-2 PE=3 SV=1	[more]
D5I3F0	8.4e-22	77.22	Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-1 PE=3 SV=1	[more]
D5I3G6	8.4e-22	77.22	Ribosomal protein S19 OS=Cucurbita pepo OX=3663 GN=rps19-2 PE=3 SV=1	[more]

BLAST of Clc06G10145 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47320.1	8.9e-16	57.33	ribosomal protein S19	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 81..166 e-value: 3.6E-7 score: 32.0
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 83..145
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 84..145 e-value: 1.9E-4 score: 21.2
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 67..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..233
None	No IPR available	PANTHER	PTHR11880:SF36	40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL	coord: 67..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10145.1	Clc06G10145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome