Clc06G10080 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10080
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	mitochondrial import inner membrane translocase subunit TIM23-2-like
Location	ClcChr06: 14281082 .. 14281633 (+)
RNA-Seq Expression	Clc06G10080
Synteny	Clc06G10080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACCCGTTTCTATCACCCCTACCAAGACCTACACGTTCCGATCACCAAGCTCTACGAACTCCCCACCTCTCCCGAGCATCTCTTCTTCGAAGAAGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCATTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGGGCGGCCGAGCCCGGCGACTCTGTCAAACTCCGTGTCAATCGAGTTCTCAACGCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCTCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCAATTGAGAGGTACTGATGATGTCTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAAGCGGCTTCCGGGCCAAGATCTGCCGCCATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGGGGGAAAGCAGGCAGTTAAGAGATATGTGCCAATATAG

mRNA sequence

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACCCGTTTCTATCACCCCTACCAAGACCTACACGTTCCGATCACCAAGCTCTACGAACTCCCCACCTCTCCCGAGCATCTCTTCTTCGAAGAAGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCATTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGGGCGGCCGAGCCCGGCGACTCTGTCAAACTCCGTGTCAATCGAGTTCTCAACGCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCTCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCAATTGAGAGGTACTGATGATGTCTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAAGCGGCTTCCGGGCCAAGATCTGCCGCCATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGGGGGAAAGCAGGCAGTTAAGAGATATGTGCCAATATAG

Coding sequence (CDS)

ATGGAAGATTCCTCCAAATCAGCCGATGATCGGAAGACCCGTTTCTATCACCCCTACCAAGACCTACACGTTCCGATCACCAAGCTCTACGAACTCCCCACCTCTCCCGAGCATCTCTTCTTCGAAGAAGCCGCCAGGCCCCACCGTTCTTGGGGCGAAAACCTCCAGTACTACACCGGAATTGGCTACCTCTCCGGCGCCATTCTCGGCGGCGCCAGGGGCTCTGTCCAGGGCCTCAGGGCGGCCGAGCCCGGCGACTCTGTCAAACTCCGTGTCAATCGAGTTCTCAACGCTGGGGGCCAGCTTGGCCGGAGGGCTGGGAACTCTCTTGGGATCCTTGGCTTGATTTTTGCTGGTTTGGAAAGTGGGGTTATTCAATTGAGAGGTACTGATGATGTCTTGAACAGTATTGTCGCCGGATTGGGGACTGGTGCGCTTTATAAAGCGGCTTCCGGGCCAAGATCTGCCGCCATCGCCGGTGCCATTGGAGGGATTGCTGCTGCAGCTGCAGTTGGGGGAAAGCAGGCAGTTAAGAGATATGTGCCAATATAG

Protein sequence

MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGLESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRYVPI

Homology

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BLAST of Clc06G10080 vs. NCBI nr
Match: XP_022988221.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita maxima])

HSP 1 Score: 337.4 bits (864), Expect = 7.6e-89
Identity = 175/184 (95.11%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSSKS DDRK TRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKR 180
           LESGVI LRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAV GKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

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BLAST of Clc06G10080 vs. NCBI nr
Match: XP_038878582.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa hispida])

HSP 1 Score: 337.0 bits (863), Expect = 9.9e-89
Identity = 174/183 (95.08%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           MEDSSKSA DRKTRFYHPYQDLHVPI KLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MEDSSKSAHDRKTRFYHPYQDLHVPIAKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGSVQGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSVQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRY 180
           ESGVI LRG DDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAV GKQAVKRY
Sbjct: 121 ESGVIHLRGRDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Clc06G10080 vs. NCBI nr
Match: XP_008462719.1 (PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo] >KAA0062574.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa] >TYK28799.1 mitochondrial import inner membrane translocase subunit TIM23-2 [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.9e-89
Identity = 172/183 (93.99%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRY 180
           ESGVI LRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAV GKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

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BLAST of Clc06G10080 vs. NCBI nr
Match: XP_022961272.1 (mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita moschata] >XP_023534786.1 mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita pepo subsp. pepo] >KAG6590277.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033438.1 Mitochondrial import inner membrane translocase subunit TIM23-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.5 bits (859), Expect = 2.9e-88
Identity = 174/184 (94.57%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS S DDRK TRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKR 180
           LESGVI LRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAV GKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

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BLAST of Clc06G10080 vs. NCBI nr
Match: XP_004142525.2 (LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM23-3 [Cucumis sativus] >XP_031736235.1 LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM23-3 [Cucumis sativus])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 168/183 (91.80%), Postives = 177/183 (96.72%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+RFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLG  GLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGSXGLIFAGL 120

Query: 121 ESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRY 180
           ESGVI LRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAV GKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Clc06G10080 vs. ExPASy Swiss-Prot
Match: Q38820 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis thaliana OX=3702 GN=TIM23-2 PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-52
Identity = 104/182 (57.14%), Postives = 133/182 (73.08%), Query Frame = 0


Query: 5   SKSADDRKTRFYHPYQDLHVPITK---LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TR Y+PYQ+  VPI K   LY+LPTSPE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGLE 124
            YL G++ G + G + G+++ E GD+ KL++NR+LN+ GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A V GKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of Clc06G10080 vs. ExPASy Swiss-Prot
Match: Q9S837 (Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis thaliana OX=3702 GN=TIM23-3 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 102/184 (55.43%), Postives = 139/184 (75.54%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPTSPE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
            GY +G++LG  +G++ G+RAAE G+S+K+R NR+LN+GG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIQLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKR 180
           ESGV  +R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAV G++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Clc06G10080 vs. ExPASy Swiss-Prot
Match: Q9LNQ1 (Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis thaliana OX=3702 GN=TIM23-1 PE=2 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 104/182 (57.14%), Postives = 132/182 (72.53%), Query Frame = 0


Query: 4   SSKSADDRKTRFYHPYQDLHVPITK--LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TR YHPYQ+  VPI    LY+LPTSPE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   G+++ E GD+ KL++NR+LN+ GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A V GKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

[Close]

BLAST of Clc06G10080 vs. ExPASy Swiss-Prot
Match: Q9USM7 (Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=tim23 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-15
Identity = 57/155 (36.77%), Postives = 84/155 (54.19%), Query Frame = 0


Query: 17  HPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTGIGYLSGAILGGARGSV 76
           HP  DL  P+  L     +   L  +  A P R W ++L Y TG  YLSG  +GG  G  
Sbjct: 45  HPLADLDKPLDYLLIEEDALSTLPGDSMAIPSRGWQDDLCYGTGTSYLSGLAIGGLWGLN 104

Query: 77  QGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGLESGVIQLRGTDDVLNS 136
           +G++  +   S +LR+N +LN   + G   GNSLG+L L++ G+ S +   R      NS
Sbjct: 105 EGMKKTKDITSTRLRLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENS 164

Query: 137 IVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAV 172
           + AG  TGALYK+  G R+ AI+ ++  +A AA +
Sbjct: 165 VAAGALTGALYKSTRGLRAMAISSSL--VATAAGI 197

[Close]

BLAST of Clc06G10080 vs. ExPASy Swiss-Prot
Match: P32897 (Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM23 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.5e-12
Identity = 51/125 (40.80%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 47  PHRSWGENLQYYTGIGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRA 106
           P R W ++L Y TG  YL G  +GG  G +QGL+   P    KL++N VLN   + G   
Sbjct: 89  PSRGWTDDLCYGTGAVYLLGLGIGGFSGMMQGLQNIPPNSPGKLQLNTVLNHITKRGPFL 148

Query: 107 GNSLGILGLIFAGLESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIA 166
           GN+ GIL L +  + S +  LRG  D   SI AG  TGAL+K++ G +    + A+  +A
Sbjct: 149 GNNAGILALSYNIINSTIDALRGKHDTAGSIGAGALTGALFKSSKGLKPMGYSSAM--VA 208

Query: 167 AAAAV 172
           AA AV
Sbjct: 209 AACAV 211

[Close]

BLAST of Clc06G10080 vs. ExPASy TrEMBL
Match: A0A6J1JGM0 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita maxima OX=3661 GN=LOC111485524 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 3.7e-89
Identity = 175/184 (95.11%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSSKS DDRK TRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSKSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKR 180
           LESGVI LRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAV GKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Clc06G10080 vs. ExPASy TrEMBL
Match: A0A5A7V5P8 (Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001650 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.8e-89
Identity = 172/183 (93.99%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRY 180
           ESGVI LRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAV GKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Clc06G10080 vs. ExPASy TrEMBL
Match: A0A1S3CJ69 (mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo OX=3656 GN=LOC103501018 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.8e-89
Identity = 172/183 (93.99%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRKTRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+LGGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRY 180
           ESGVI LRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAV GKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Clc06G10080 vs. ExPASy TrEMBL
Match: A0A6J1H9R2 (mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbita moschata OX=3662 GN=LOC111461819 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 174/184 (94.57%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MEDSSKSADDRK-TRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYT 60
           MEDSS S DDRK TRFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYT
Sbjct: 1   MEDSSNSGDDRKNTRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYT 60

Query: 61  GIGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAG 120
           GIGYLSGA+LGGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAG
Sbjct: 61  GIGYLSGALLGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAG 120

Query: 121 LESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKR 180
           LESGVI LRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAV GKQAVKR
Sbjct: 121 LESGVIHLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKR 180

Query: 181 YVPI 184
           YVPI
Sbjct: 181 YVPI 184

[Close]

BLAST of Clc06G10080 vs. ExPASy TrEMBL
Match: A0A0A0M0I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.1e-88
Identity = 170/183 (92.90%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           ME+SSKS DDRK+RFYHPYQDLHVPITKLYELPT+PEHLFFEEAARPHRSWGENLQYYTG
Sbjct: 1   MENSSKSPDDRKSRFYHPYQDLHVPITKLYELPTAPEHLFFEEAARPHRSWGENLQYYTG 60

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
           IGYLSGA+ GGARGS+QGLRAAEPGDSVKLR+NRVLN+GGQLGRRAGNSLGILGLIFAGL
Sbjct: 61  IGYLSGALFGGARGSIQGLRAAEPGDSVKLRLNRVLNSGGQLGRRAGNSLGILGLIFAGL 120

Query: 121 ESGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRY 180
           ESGVI LRG+DDVLNSIVAGLGTGA+YKAASGPRSAAIAGAIGGIAAAAAV GKQAVKRY
Sbjct: 121 ESGVIHLRGSDDVLNSIVAGLGTGAVYKAASGPRSAAIAGAIGGIAAAAAVAGKQAVKRY 180

Query: 181 VPI 184
           VPI
Sbjct: 181 VPI 183

[Close]

BLAST of Clc06G10080 vs. TAIR 10
Match: AT1G72750.1 (translocase inner membrane subunit 23-2 )

HSP 1 Score: 205.7 bits (522), Expect = 3.2e-53
Identity = 104/182 (57.14%), Postives = 133/182 (73.08%), Query Frame = 0


Query: 5   SKSADDRKTRFYHPYQDLHVPITK---LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 64
           S    D  TR Y+PYQ+  VPI K   LY+LPTSPE LF EEA R  RSWGENL +YTG 
Sbjct: 7   SDHGSDENTRLYNPYQNYEVPINKSQYLYKLPTSPEFLFTEEALRQRRSWGENLTFYTGT 66

Query: 65  GYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGLE 124
            YL G++ G + G + G+++ E GD+ KL++NR+LN+ GQ GR  GN +GI+GL++AG+E
Sbjct: 67  AYLGGSVAGASVGVITGVKSFESGDTTKLKINRILNSSGQTGRTWGNRIGIIGLVYAGIE 126

Query: 125 SGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRYV 184
           SG++     DDV  S+VAGLGTGA+ +AA G RSAA+AGA+GG+AA A V GKQ VKRYV
Sbjct: 127 SGIVAATDRDDVWTSVVAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQIVKRYV 186

[Close]

BLAST of Clc06G10080 vs. TAIR 10
Match: AT3G04800.1 (translocase inner membrane subunit 23-3 )

HSP 1 Score: 204.1 bits (518), Expect = 9.3e-53
Identity = 102/184 (55.43%), Postives = 139/184 (75.54%), Query Frame = 0


Query: 1   MEDSSKSADDRKTRFYHPYQDLHVPITKLYELPTSPEHLFFEEAARPHRSWGENLQYYTG 60
           M  S+     +K R Y+PYQ +++P  KLYELPTSPE LF EEA +   +WGENL ++TG
Sbjct: 5   MNHSTGHQQQQKYRQYNPYQQVNLPYRKLYELPTSPEFLFEEEATKKRLTWGENLTFFTG 64

Query: 61  IGYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGL 120
            GY +G++LG  +G++ G+RAAE G+S+K+R NR+LN+GG + RR GN LG +GL+FA +
Sbjct: 65  WGYCTGSVLGAFKGTIAGMRAAERGESLKIRTNRILNSGGLVARRGGNCLGSVGLMFAAM 124

Query: 121 ESGVIQLR-GTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKR 180
           ESGV  +R G D  L +++AGL TG LY+AASGPRSA +AGA+GG+AA AAV G++ VKR
Sbjct: 125 ESGVTYMRDGDDGSLTTVIAGLATGVLYRAASGPRSAVVAGAVGGVAALAAVAGRRIVKR 184

Query: 181 YVPI 184
           +VPI
Sbjct: 185 FVPI 188

[Close]

BLAST of Clc06G10080 vs. TAIR 10
Match: AT1G17530.1 (translocase of inner mitochondrial membrane 23 )

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-52
Identity = 104/182 (57.14%), Postives = 132/182 (72.53%), Query Frame = 0


Query: 4   SSKSADDRKTRFYHPYQDLHVPITK--LYELPTSPEHLFFEEAARPHRSWGENLQYYTGI 63
           SS    D  TR YHPYQ+  VPI    LY+LPTSPE LF EE+ +  RSWGENL +YTG 
Sbjct: 6   SSDHESDENTRLYHPYQNYQVPIKSQYLYKLPTSPEFLFTEESLKQRRSWGENLTFYTGT 65

Query: 64  GYLSGAILGGARGSVQGLRAAEPGDSVKLRVNRVLNAGGQLGRRAGNSLGILGLIFAGLE 123
           GYL+G++ G + G   G+++ E GD+ KL++NR+LN+ GQ GR  GN +GI+GLI+AG+E
Sbjct: 66  GYLAGSVAGASAGIFSGIKSFENGDTTKLKINRILNSSGQAGRTWGNRVGIVGLIYAGIE 125

Query: 124 SGVIQLRGTDDVLNSIVAGLGTGALYKAASGPRSAAIAGAIGGIAAAAAVGGKQAVKRYV 183
           SGV+ +   DDV  S+VAGLGTGA+++AA G RSAA+AGA GGIAA A V GKQ  KRY 
Sbjct: 126 SGVVAVTDKDDVWTSVVAGLGTGAVFRAARGVRSAAVAGAFGGIAAGAVVAGKQVFKRYA 185

The following BLAST results are available for this feature:

BLAST of Clc06G10080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988221.1	7.6e-89	95.11	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_038878582.1	9.9e-89	95.08	mitochondrial import inner membrane translocase subunit TIM23-2-like [Benincasa ...	[more]
XP_008462719.1	9.9e-89	93.99	PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Cucu...	[more]
XP_022961272.1	2.9e-88	94.57	mitochondrial import inner membrane translocase subunit TIM23-2-like [Cucurbita ...	[more]
XP_004142525.2	1.6e-86	91.80	LOW QUALITY PROTEIN: mitochondrial import inner membrane translocase subunit TIM...	[more]

BLAST of Clc06G10080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38820	4.5e-52	57.14	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Arabidopsis t...	[more]
Q9S837	1.3e-51	55.43	Mitochondrial import inner membrane translocase subunit TIM23-3 OS=Arabidopsis t...	[more]
Q9LNQ1	1.7e-51	57.14	Mitochondrial import inner membrane translocase subunit TIM23-1 OS=Arabidopsis t...	[more]
Q9USM7	1.2e-15	36.77	Mitochondrial import inner membrane translocase subunit tim23 OS=Schizosaccharom...	[more]
P32897	3.5e-12	40.80	Mitochondrial import inner membrane translocase subunit TIM23 OS=Saccharomyces c...	[more]

BLAST of Clc06G10080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGM0	3.7e-89	95.11	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A5A7V5P8	4.8e-89	93.99	Mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A1S3CJ69	4.8e-89	93.99	mitochondrial import inner membrane translocase subunit TIM23-2 OS=Cucumis melo ...	[more]
A0A6J1H9R2	1.4e-88	94.57	mitochondrial import inner membrane translocase subunit TIM23-2-like OS=Cucurbit...	[more]
A0A0A0M0I6	4.1e-88	92.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690355 PE=4 SV=1	[more]

BLAST of Clc06G10080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72750.1	3.2e-53	57.14	translocase inner membrane subunit 23-2	[more]
AT3G04800.1	9.3e-53	55.43	translocase inner membrane subunit 23-3	[more]
AT1G17530.1	1.2e-52	57.14	translocase of inner mitochondrial membrane 23	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02466	Tim17	coord: 57..165 e-value: 6.4E-23 score: 81.3
None	No IPR available	PANTHER	PTHR15371	TIM23	coord: 1..183
None	No IPR available	PANTHER	PTHR15371:SF24	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23-3	coord: 1..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10080.1	Clc06G10080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex
molecular_function	GO:0008320	protein transmembrane transporter activity