Clc06G10030 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G10030
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glyco_18 domain-containing protein
Location	ClcChr06: 14034682 .. 14037516 (-)
RNA-Seq Expression	Clc06G10030
Synteny	Clc06G10030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATCACACGCTTTTGCCGGGATTCAATTCCCTTCATCATTCTCATCCATGCAAATCAAAGGACAAACCCTCACAGGTAAGAGTCCATAACTCACTTAAGATTGAGATCAAGTTACATATGATCATTCTATAAAATATTAATCTCTTCAGTCAATAGTGTTACATAGTGATTAACTATTTCGCAATCCGATCTCATACAAACTCTTTGTATAAGATACCCTTACGTGCATGTCTCTATATAAACAATTTGGATCAAATTATTTTTAATGATTACATAGTGGGTCATAACCATAGTGTTACCAAGATAAGGTACCCAACCTTATCCATATACTATAGACCATTTAAATTATCACTTGAACATGATCTACCTGTATGTCAACCACTTACTATTCAAATTTACAGTGAACAATCTTGGATCTTAGTTTATTAGATTGAGTTAAGCAAGTCTAAACGTCGAATAAAAAACTCTTTATTTCATTAAATAAATAACTTGTTTATACATTACAAGCCATGAGATTTATGGTACAAACCCCAACAAAACATACATCAAATTCAAACAACATTCAAAGAATCATAAAGCAATATGCATTAAGTTCAAATACGAGAGGTCTCACAAAGCTACAATAGTTCCTTGCTCCTTAAAACTAGAAAAACAAACTAACTTCAAGAATCCATAGACAAGATGTAGATGAGGGTAGGGAGCATCCAAATCAAGATTATAACCCAAAGGAAAAATGAAAAACCTAAGCTAAAAAGATATAAAAATGTGGAGAAAAGGGTTGGTGGCTACTTCTCTCTCGTTCCTCCATTCTCTTTAGTATTTGGTCTCCGTTTTGCCCTAAAAGTTTGATGACTTTATATAGAAAATCAGGAGAGCGACACGACGCTCAAACCCTTACCGCAGCCCCGTGCCAATGCACCAACCAACGGTCTAGCACTAGACTAATATGACTTCTATGAATGGTCCCATAGCACCATGTCATGCTTGGCCCATTCTTTTCACTTCGCCTCTCAATCCTTGGTAAATGTCCTTTTTTTGTTCAATACACACCCAAAATGTCCCGATGGTCTTCTTTGCTTAACTCCTTGTCGAAGAACCGAATATGACATTAAATACGTGAGAACTAACACGATTTAGATCAATAAAGATAGCTCTTTTAGGGAACTATCAAACATGTTGGAGGGTCTTTTTTTCTGTGCCTTCCACCACAAGATCTTCTTTGCTATGAGACTTGAACTAGGACCAAAGCTTGTGAAAGCCTTTTTGAAAAAGAAGGGAAAAGGGAAAGGCAATTTGAAGAATTCTACAAAAAAAAAAAATACTTTCTTTGCATTTCTAAAGTTCTAATGAGCATTATTTATCTTACGACAAAACTCTTAAAGTCCTATTTATAATGGCTTAGGAAAATTTTTGCCTAAATTTAAAATATTTAAATATATATTAGGTGAATCTCATTCAAATTAAATATAGAAAATATTTTTTCTAATCAATTATCAAACTCTCGTAATATATATTTTCTTATTTGAATCTCATTTAAATTAAATATGGAAGAATTGTGAGAGGTAACAAATCTCAAGCTTCATTTTTTAAAATTAATCTCAATCTCACTTTATTATGTTTTTTATACTAGTCTACTTCATTCACTGTACTATATGCAACGGAAGAATCTGCCGATCAAGACTCCGTTTTCAATTGGCAGCAGTGGGTAATGATAGTGCTTGTGATGCAACACATCGTCAAATTTTCATTAGTTCAATTTGATTGGTTGGATGTCGATCGTGAATTTCTTAAAGACAAGATTGGGAAAAAATATTTGGCATAAGAAGAGAATCGACAGGGAAGCAAAGGCAGCGTCACGCCTGCCACCACGTACTAAGCATCAAAGTTTGTCACTTACGGCAAGTATTGCTCTTTCCTAGGGGCAGTGATTTCGAAAAGTCTTGATTGGATTAACATTATATGCTTCGACTATCACAAGTCATGCGACACGTTGGCGACTGGAGCTCATGTTGTATTGTTCGATCCACATATGAATTTGAGCGTCTATTATGTTTATTCATGGATCTCCGTCAGCGTGCCTCGGAACAAGATGGTTATGGGTATTCCACCGTATGGCAAGTCTCGGACTATAAAGAATTCTTGTGTGCATGGTCTCGGAGCACCCAAGTTGGTATTTTTCTGATTCAATAGCTTAATATTTCTCAATATCAGAATAGTGTTGACAAAGAGGAAACTAGGAAAAGCAAATTCTTGATTTTTTTTTTTTTTTTTTATATATATATATTTTTTATTTGATTGAAGTTCTAATTGACATTGCATCATGGATTTTTGTTTTACTAAAATTTTGGAAAGAAGAAAAAAGTGTCATGGCCTCGCTTGATAAACTAGTGTTATATATACTTGGATAAAGTGATAATCTTTCCATGAATATCAATCTATCACTAATATACAATGATAGATTAATATTCTTACTTGACTTGAATTATCAATGATAGAAGATTTTTTTTTTAAATAATGCTTTTTTAATAAATATTGAGAAAAATAGGGTCGAGGGGAAAGAAATTCCAAAAATAGGGTAGTGGAATCGTGGACCCGGCCACAAGTATGCAAAATCGTGGACCGGGTCCACGATTATTGTTGAAATCGTGGACGGGGTCCACGATTTCACTGTCACGTTCACGCCCCCTGCCATGCTGATGCTGAAGACTGCCACGTTGACTAGAAGACTACCACGTGAACAGAAGACTGCCAAGCTGACTCGCTGCATCCGTCTGCTGACCGGACTCATGGACCGGGTCCACAATTATCGAAATCATGGACGTGGTCCATGA

mRNA sequence

ATGCGATCACACGCTTTTGCCGGGATTCAATTCCCTTCATCATTCTCATCCATGCAAATCAAAGGACAAACCCTCACAGGGGCAGTGATTTCGAAAAGTCTTGATTGGATTAACATTATATGCTTCGACTATCACAAGTCATGCGACACGTTGGCGACTGGAGCTCATGTTGTATTGTTCGATCCACATATGAATTTGAGCGTCTATTATGTTTATTCATGGATCTCCGTCAGCGTGCCTCGGAACAAGATGGTTATGGGTATTCCACCGTATGGCAAGTCTCGGACTATAAAGAATTCTTGTGTGCATGGTCTCGGAGCACCCAAGTTGTGGAATCGTGGACCCGGCCACAAGTATGCAAAATCGTGGACCGGGTCCACGATTATTGTTGAAATCGTGGACGGGGTCCACGATTTCACTGTCACGTTCACGCCCCCTGCCATGCTGATGCTGAAGACTGCCACGTTGACTAGAAGACTACCACGTGAACAGAAGACTGCCAAGCTGACTCGCTGCATCCGTCTGCTGACCGGACTCATGGACCGGGTCCACAATTATCGAAATCATGGACGTGGTCCATGA

Coding sequence (CDS)

ATGCGATCACACGCTTTTGCCGGGATTCAATTCCCTTCATCATTCTCATCCATGCAAATCAAAGGACAAACCCTCACAGGGGCAGTGATTTCGAAAAGTCTTGATTGGATTAACATTATATGCTTCGACTATCACAAGTCATGCGACACGTTGGCGACTGGAGCTCATGTTGTATTGTTCGATCCACATATGAATTTGAGCGTCTATTATGTTTATTCATGGATCTCCGTCAGCGTGCCTCGGAACAAGATGGTTATGGGTATTCCACCGTATGGCAAGTCTCGGACTATAAAGAATTCTTGTGTGCATGGTCTCGGAGCACCCAAGTTGTGGAATCGTGGACCCGGCCACAAGTATGCAAAATCGTGGACCGGGTCCACGATTATTGTTGAAATCGTGGACGGGGTCCACGATTTCACTGTCACGTTCACGCCCCCTGCCATGCTGATGCTGAAGACTGCCACGTTGACTAGAAGACTACCACGTGAACAGAAGACTGCCAAGCTGACTCGCTGCATCCGTCTGCTGACCGGACTCATGGACCGGGTCCACAATTATCGAAATCATGGACGTGGTCCATGA

Protein sequence

MRSHAFAGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYYVYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPGHKYAKSWTGSTIIVEIVDGVHDFTVTFTPPAMLMLKTATLTRRLPREQKTAKLTRCIRLLTGLMDRVHNYRNHGRGP

Homology

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BLAST of Clc06G10030 vs. NCBI nr
Match: XP_038878601.1 (class V chitinase CHIT5b-like [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-26
Identity = 68/120 (56.67%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 23  QTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPR 82
           ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NLS YY + SWIS  VPR
Sbjct: 199 RSFPAAEISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNLSSYYGLRSWISAGVPR 258

Query: 83  NKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPGH---------KYAKSWTGSTIIVEI 133
           NKMVMGIP YGKS T+K+  VHG+GAP +   GPG          K     TG+T++ +I
Sbjct: 259 NKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPGDDGILTYVQVKEFNQKTGATVVYDI 317

[Close]

BLAST of Clc06G10030 vs. NCBI nr
Match: XP_008443884.1 (PREDICTED: chitotriosidase-1-like [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-25
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAAISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. NCBI nr
Match: TYK03628.1 (chitotriosidase-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-25
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAAISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. NCBI nr
Match: KAA0035049.1 (chitotriosidase-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-25
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAAISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. NCBI nr
Match: XP_004146700.1 (class V chitinase CHIT5b [Cucumis sativus] >KGN65227.1 hypothetical protein Csa_020052 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-24
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAEISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. ExPASy Swiss-Prot
Match: U5N4E3 (Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 5.3e-11
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 30  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGI 89
           I+K+LDW+N++ +D   S   + TGA   +FD   N+SV   ++SWI   V   K+VMG+
Sbjct: 213 INKNLDWVNVMSYDLRGSGSNV-TGAPSGMFDSKSNVSVVSGLFSWIRGGVAPEKIVMGM 272

Query: 90  PPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           P YGKS  +++  VHG+GAP   N GPG
Sbjct: 273 PLYGKSWKLQDPNVHGIGAP---NVGPG 296

[Close]

BLAST of Clc06G10030 vs. ExPASy Swiss-Prot
Match: A0A1B1J8Z2 (Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 9.1e-11
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           + + F S+ S +    ++     I K LDW + +CFDY+ +     TG +  L+DP+ N+
Sbjct: 204 SAVYFNSTISLIGNGPRSYPVRAIRKYLDWASPMCFDYNGAWAN-ETGFNAALYDPNSNI 263

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGA 108
           S  Y + SWI   VP  K+VMG+P YG++  +K+   HG+GA
Sbjct: 264 STKYGIGSWIGSGVPAEKLVMGLPLYGRAWELKDPNDHGVGA 304

[Close]

BLAST of Clc06G10030 vs. ExPASy Swiss-Prot
Match: A0A072UR65 (Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-09
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 30  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGI 89
           I+++LDW+N++ ++  +   +  TGA    FDP  N+SV   + SWI   V   K+VMG+
Sbjct: 207 INENLDWVNVMSYEL-RGPRSNKTGAPSGTFDPKSNVSVVSGLLSWIHSGVVPEKLVMGM 266

Query: 90  PPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           P YGKS  +++  VHG+GAP +   GPG
Sbjct: 267 PLYGKSWKLRDPNVHGIGAPSV-GSGPG 292

[Close]

BLAST of Clc06G10030 vs. ExPASy Swiss-Prot
Match: A0A072VEP0 (Class V chitinase CHIT5a OS=Medicago truncatula OX=3880 GN=CHIT5A PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-07
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 30  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLSVYY-VYSWISVSVPRNKMVMGI 89
           I+K LDW + +CFDYH + D   T  +  L+D    +S  + ++SWI   V   K+VMG+
Sbjct: 214 INKYLDWASPMCFDYHGTWDN-NTDFNAALYDSKSEISTNFGLHSWIKSGVRPEKLVMGL 273

Query: 90  PPYGKSRTIKNSCVHGLGA 108
             YG++  +K+  V+G+GA
Sbjct: 274 ALYGRAWELKDPNVNGVGA 291

[Close]

BLAST of Clc06G10030 vs. ExPASy Swiss-Prot
Match: Q9D7Q1 (Chitotriosidase-1 OS=Mus musculus OX=10090 GN=Chit1 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 2.3e-06
Identity = 30/95 (31.58%), Postives = 52/95 (54.74%), Query Frame = 0


Query: 30  ISKSLDWINIICFDYHKSCDTLATGAHVVLFD--------PHMNLSVYYVYSWISVSVPR 89
           I++SLD+IN++ +D+H S +   TG +  L+            N+    V  W+    P 
Sbjct: 200 IAQSLDFINLMAYDFHSSLEK-TTGHNSPLYKRQGESGAAAEQNVDA-AVTLWLQKGTPA 259

Query: 90  NKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           +K+++G+P YG+S T+ +S  +G+GAP      PG
Sbjct: 260 SKLILGMPTYGRSFTLASSSDNGVGAPATGPGAPG 292

[Close]

BLAST of Clc06G10030 vs. ExPASy TrEMBL
Match: A0A5A7T117 (Chitotriosidase-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001040 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAAISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. ExPASy TrEMBL
Match: A0A5D3BXC7 (Chitotriosidase-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00550 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAAISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. ExPASy TrEMBL
Match: A0A1S3B924 (chitotriosidase-1-like OS=Cucumis melo OX=3656 GN=LOC103487372 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.0e-25
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAAISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. ExPASy TrEMBL
Match: A0A0A0LWL0 (Glyco_18 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G267230 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.2e-25
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++   A ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 181 AAVYYASEFRTYG-EPRSFPAAEISKSLDWINVMCFDYHGSWDTTATGAHAALFDPHTNL 240

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAPKLWNRGPG 117
           S +Y + SWIS  VPR+KMVMGIP YGKS T+K+  VHG+GAP +   GPG
Sbjct: 241 SSHYGLRSWISAGVPRSKMVMGIPLYGKSWTLKDPYVHGVGAPAV-GVGPG 289

[Close]

BLAST of Clc06G10030 vs. ExPASy TrEMBL
Match: A0A6J1EPX8 (chitotriosidase-1-like OS=Cucurbita moschata OX=3662 GN=LOC111436323 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.0e-24
Identity = 61/103 (59.22%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 7   AGIQFPSSFSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNL 66
           A + + S F +   + ++     ISKSLDWIN++CFDYH S DT ATGAH  LFDPH NL
Sbjct: 184 AAVYYASEFRTYG-ERRSFPAEAISKSLDWINVMCFDYHGSWDTSATGAHAALFDPHTNL 243

Query: 67  SVYY-VYSWISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGAP 109
           S +Y + SWIS  VPRNKMVMGIP YGKS T+K+  VHG+GAP
Sbjct: 244 SSHYGLRSWISAGVPRNKMVMGIPLYGKSWTLKDPNVHGVGAP 285

[Close]

BLAST of Clc06G10030 vs. TAIR 10
Match: AT4G19810.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 50.1 bits (118), Expect = 2.4e-06
Identity = 26/83 (31.33%), Postives = 41/83 (49.40%), Query Frame = 0


Query: 28  AVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHM--NLSVYYVYSWISVSVPRNKMV 87
           + ++ SLDW+N++ +D++    +  TG    LFDP            SWI   +P  K V
Sbjct: 194 SAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAV 253

Query: 88  MGIPPYGKSRTIKNSCVHGLGAP 109
           +G P YG +  + N+  H   AP
Sbjct: 254 LGFPYYGYAWRLTNANSHSYYAP 276

[Close]

BLAST of Clc06G10030 vs. TAIR 10
Match: AT4G19800.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 46.2 bits (108), Expect = 3.4e-05
Identity = 29/94 (30.85%), Postives = 44/94 (46.81%), Query Frame = 0


Query: 15  FSSMQIKGQTLTGAVISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYVYS 74
           + S   +G       IS SLDWIN++ +D++    +  TG    L+ P    S    V  
Sbjct: 160 YYSSNYQGVPYPVLAISNSLDWINLMAYDFYGPGWSTVTGPPASLYLPTDGRSGDSGVRD 219

Query: 75  WISVSVPRNKMVMGIPPYGKSRTIKNSCVHGLGA 108
           W    +P  K V+G P YG + T+ +  V+G  A
Sbjct: 220 WTEAGLPAKKAVLGFPYYGWAWTLADPDVNGYDA 253

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BLAST of Clc06G10030 vs. TAIR 10
Match: AT4G19720.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 45.8 bits (107), Expect = 4.5e-05
Identity = 24/66 (36.36%), Postives = 33/66 (50.00%), Query Frame = 0


Query: 30  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHM---NLSVYYVYSWISVSVPRNKMVM 89
           I K LDW+N+I +D++ S  T+  G    LFDP         Y +  WI   +P  K V+
Sbjct: 185 IKKKLDWVNLIAYDFYSSSTTI--GPPAALFDPSNPKGPCGDYGLKEWIKAGLPAKKAVL 244

Query: 90  GIPPYG 93
           G P  G
Sbjct: 245 GFPYVG 248

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BLAST of Clc06G10030 vs. TAIR 10
Match: AT4G19820.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04
Identity = 20/65 (30.77%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 30  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMN--LSVYYVYSWISVSVPRNKMVMG 89
           ++ SLDW+N++ +D+++S  +  T +   L+DP          V +W    +P  K V+G
Sbjct: 194 VADSLDWVNLVAYDFYESGSSRVTCSPAPLYDPITTGPSGDAGVRAWTQAGLPAKKAVLG 253

Query: 90  IPPYG 93
            P YG
Sbjct: 254 FPLYG 258

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BLAST of Clc06G10030 vs. TAIR 10
Match: AT4G19770.1 (Glycosyl hydrolase family protein with chitinase insertion domain )

HSP 1 Score: 42.4 bits (98), Expect = 5.0e-04
Identity = 26/76 (34.21%), Postives = 37/76 (48.68%), Query Frame = 0


Query: 30  ISKSLDWINIICFDYHKSCDTLATGAHVVLFDPHMNLS-VYYVYSWISVSVPRNKMVMGI 89
           IS+ LDW+NI  +D++    T  TG    L+      S    V  WI   +P  K V+G 
Sbjct: 88  ISELLDWVNIKAYDFYGPGCTEVTGPPAALYLQSDGPSGDSGVKDWIDAGLPAEKAVLGF 147

Query: 90  PPYGKSRTIKNSCVHG 105
           P YG + T+ +   HG
Sbjct: 148 PYYGWAWTLADPKNHG 163

The following BLAST results are available for this feature:

BLAST of Clc06G10030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878601.1	1.5e-26	56.67	class V chitinase CHIT5b-like [Benincasa hispida]	[more]
XP_008443884.1	6.2e-25	57.66	PREDICTED: chitotriosidase-1-like [Cucumis melo]	[more]
TYK03628.1	6.2e-25	57.66	chitotriosidase-1-like [Cucumis melo var. makuwa]	[more]
KAA0035049.1	6.2e-25	57.66	chitotriosidase-1-like [Cucumis melo var. makuwa]	[more]
XP_004146700.1	1.1e-24	57.66	class V chitinase CHIT5b [Cucumis sativus] >KGN65227.1 hypothetical protein Csa_...	[more]

BLAST of Clc06G10030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
U5N4E3	5.3e-11	44.32	Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2	[more]
A0A1B1J8Z2	9.1e-11	36.27	Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2	[more]
A0A072UR65	1.3e-09	40.91	Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1	[more]
A0A072VEP0	1.6e-07	37.97	Class V chitinase CHIT5a OS=Medicago truncatula OX=3880 GN=CHIT5A PE=1 SV=1	[more]
Q9D7Q1	2.3e-06	31.58	Chitotriosidase-1 OS=Mus musculus OX=10090 GN=Chit1 PE=1 SV=2	[more]

BLAST of Clc06G10030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T117	3.0e-25	57.66	Chitotriosidase-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A5D3BXC7	3.0e-25	57.66	Chitotriosidase-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3B924	3.0e-25	57.66	chitotriosidase-1-like OS=Cucumis melo OX=3656 GN=LOC103487372 PE=3 SV=1	[more]
A0A0A0LWL0	5.2e-25	57.66	Glyco_18 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G267230 PE...	[more]
A0A6J1EPX8	2.0e-24	59.22	chitotriosidase-1-like OS=Cucurbita moschata OX=3662 GN=LOC111436323 PE=4 SV=1	[more]

BLAST of Clc06G10030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G19810.1	2.4e-06	31.33	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19800.1	3.4e-05	30.85	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19720.1	4.5e-05	36.36	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19820.1	2.2e-04	30.77	Glycosyl hydrolase family protein with chitinase insertion domain	[more]
AT4G19770.1	5.0e-04	34.21	Glycosyl hydrolase family protein with chitinase insertion domain	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.20.20.80	Glycosidases	coord: 7..125 e-value: 1.9E-13 score: 52.3
None	No IPR available	PANTHER	PTHR11177	CHITINASE	coord: 28..110
None	No IPR available	PANTHER	PTHR11177:SF339	NOD FACTOR HYDROLASE PROTEIN 1	coord: 28..110
IPR001223	Glycoside hydrolase family 18, catalytic domain	PFAM	PF00704	Glyco_hydro_18	coord: 28..100 e-value: 1.4E-10 score: 41.4
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 27..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G10030.1	Clc06G10030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006032	chitin catabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004568	chitinase activity
molecular_function	GO:0008061	chitin binding