Clc06G09940 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc06G09940
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Pentatricopeptide repeat-containing protein
Location	ClcChr06: 13594876 .. 13597969 (+)
RNA-Seq Expression	Clc06G09940
Synteny	Clc06G09940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATATAATGGTAGTTGACATTGAATAATTCTGGAAAATGCTGGTGATGAAGACTTCGGCATTCAATGCAATCAATTTCGGGGAGAGAGAAAGTTTTGGGCTGTTTTAATTTTGGGGATAAAATTGGTATTTCATGTTGCCAAAAGATTATCATTTCGTGCAATTTTCCCGTTTTCACCGTTCAATGGGTGTTGCCGCTGCAAGGTAGTCGCGCTCGAGGTTCCCAAGTTGTAGCGCTTTCTGAAGTTGCAGATCTTCCAAGTCGTCGCCGCCGTCCGATGGAAGCCATTGTTGCACCGTTCAATGGGTGTTGTCGTTCCTAGTAATCGCTGGCGGTGTTACAAATCGTGAAAGGAGTTGCGTGTGGTTTTAGGGCTTTTTTTTTGTCCGAAAAATCTTTAAATTGAAAACTCATCCTAAAATTCTTTAAGCCGCCTAATATAATCTTATTTTTGGCGATTTCCCAACCTTCGTCTTGCTGCTCTCTGCTACGCTTCACCTCCCTTCATCCTATTCGTCACCGACAACGGCGGACAAGGCAGTCAGCATATAAACCAGAAAGTTCATGACCAACCGGCTTCTCTCAGAAAGCAATTTGTGAGTTTCCTTCTTTTCTTCTCTACTATTACGCGTGTCCTTTGTTTTATAAATTGGTTTGAAGTATAAGATTCAACAATCCATATTCAAATTAATGAAATCCTGTTGTTTAAGAATTTTTAGATGATTCCCATTTGACCCTAGTTTTCATATGTAGCCCTATTTAACTCTACAGTTTGATGTTCGTTCTCTTTGTCGACATTTACCCCATTCGTATCTGCTAACCTTCTGTTATAACTAGCTGACAATTGTATACATGCTCTGTGATTTTGTACTTTTTCTTTGAATCTTCTTCACTATGTACAAGTTTTGTGTGAATGTTGGCTGCCTATCAATGATTCAATATCCTACGTAGCTGCTAACCTTCCGTTCGTGTTCTTTTGTTCTCTACTGGCTGAGAACATCCTGGGAGTTCTACTCTTAAAGCCACAACACCGGGACTTTAGATTCTAGTACTTCCAATTTGTAGGCTTTAGTTCTTATTGTTCCTTTTCCAGTTTGATGCAGATCATTCTGCACCCAGGAAGACCAAACATCTCTAAGGTAAGTCGATTTACTTGTGGAAGTTATTGTGCTTCTGCTTTAGCATAATTGCAGTGCAGCTTGTGGATTGCTTTTGTAATGAATAAATCCAGCAATTATGTCTTACAGCCAATTTATCACAGTTCATATTTATAATCTTTTTGCTTTCTTTAATGTTTTATGCTGAGCGACGGATACATTGTTGAGTTAAATGGTTTTGAGTTTCAAGTCTGGTTGCATGTTAAATTGTCTGCTCATTTGATTTCACTTTTATCTTTTCTTGATTTGAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTGTTTTTAAGGTCCGATCTCACTTCGGAGGTGGAAAATCAACTAGGCTTGGTTTGATTTATGATTATGTTGAAAATGCCAAAAAATATGAGCCCAAGTACATTTGTCTCATCCGCCATTTCAGTACGTCAAACTCTTCTTGGAGTGGCTCCGTCGCGCCTTCTAAAGATGACTATTTTGCCGCAATCCACCATATCTCCCACATTGTTCGCCGAGACTTCTACATGGAGCGCACCCTCAACAAGCTCCAAATCTCCTACCTCAATTCTGAGCTTGTTTTTAGAGTCCTTCGCGCTTGCTCCAACTCTGGTACTGAGTCCTTCCGTTTCTTCAATTGGGCTTGCACTCACAACCCCTCTTACAAACCCACTACCCTTGAATTCGAAGAGCTCGTCAAAACCCTAGCTCGGACCAAAAAGTATACCACAATGTGGAAAGTTCTTCTTCAGATGAAGACGCAGAATCTCAAAATTTCACCGGAAACGATATCATTCATAATTCAAGAGTATGGTAAGCAAGGCCTTGTCGATAATGCAGTTACCATATTCAATCAATGTTCTAAATCTATCGATTGTCCACAAACAGTTGAGGTCTATAACGCATTACTTTTTGCGCTTTGTGAGGTTAAGATGTTTCATGGAGCTTATGCGTTGATTAGGAGGATGATTAGAAAAGGGGTAACTCCTGATAAAAAGACTTATGGAACTCTTGTAACTGGATGGTGCTCAGCGGGGAAGATGAGGGAAGCTCAGGAGTTCTTGGAGGAAATGAGCCAGAAGGGGTTCAATCCTCCTTTGCGAGGTCGTGATCTTTTGGTAGAAGGATTGCTGAATGCAGGGTATTTAGAATCTGCTAAGGATATGGTTAGAAAAATGACAAAAGAAGGATTTGTGCCTGATATAGGGACTTTTAATTCTCTGATTAATGTTATATGTAACTCTGGAGAAGTTGATTTTTGCATAAATATTTTTCATGAGGTGTGCAAGTTGGGGCTTTGTCCTGATATAAATACTTACAAGATTTTAATTCCAGCAACTTCAAAAGTAGGTAGGATTGATGAAGCATTCAGGCTTTTGCATTGCTGTATGGAGGATGGACATATACCGTTTCCAAGTCTTTATGGACCAATACTTAAAGGAATGTGTAAAATGGGTCAGTTTGATGATGCATTTTGCTTTTTCAGTGATATGAAACATAAGGGGCATCCACCAAATCGGCCAGTGTACACAATGTTGATAACAATGTGTGGACGTGGAGGGAGATTTGTTGATGCTGCTAATTACTTGATGGAAATGGCTGAATTTGGTTTACCTCCAATTTCAAGGTGCTTTGATATGGTTACTGATGGATTAAAGAACTGTGGAAAGCATGATTTAGCTAAGAAGATCGAGCAGCTTGAAGTTTCTATTCGAGGCATTTGATCTTGTAGTAAAATAATAAGCAAGCACTTTTTCTGCTTGAAGGATGTGGTTGAAATGGATATGAAAAATGAAAAACTATGGAAGTCGGGAAAAGGACAAACAAAGATGGTGGACAAGGTTTCATCACTATAACTCAAGGTTTCATCACTATCTTATTCTCTACTCTTTGCTGAACCTTCATCTTGCTGCTCTCTGCTATGCTTCTC

mRNA sequence

TTGATATAATGGTAGTTGACATTGAATAATTCTGGAAAATGCTGGTGATGAAGACTTCGGCATTCAATGCAATCAATTTCGGGGAGAGAGAAAGTTTTGGGCTGTTTTAATTTTGGGGATAAAATTGGTATTTCATGTTGCCAAAAGATTATCATTTCGTGCAATTTTCCCGTTTTCACCGTTCAATGGGTGTTGCCGCTGCAAGGTAGTCGCGCTCGAGGTTCCCAAGTTGTAGCGCTTTCTGAAGTTGCAGATCTTCCAAGTCGTCGCCGCCGTCCGATGGAAGCCATTGTTGCACCGTTCAATGGGTGTTGTCGTTCCTAGTAATCGCTGGCGGTGTTACAAATCGTGAAAGGAGTTGCGTGTGGTTTTAGGGCTTTTTTTTTGTCCGAAAAATCTTTAAATTGAAAACTCATCCTAAAATTCTTTAAGCCGCCTAATATAATCTTATTTTTGGCGATTTCCCAACCTTCGTCTTGCTGCTCTCTGCTACGCTTCACCTCCCTTCATCCTATTCGTCACCGACAACGGCGGACAAGGCAGTCAGCATATAAACCAGAAAGTTCATGACCAACCGGCTTCTCTCAGAAAGCAATTTGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTGTTTTTAAGGTCCGATCTCACTTCGGAGGTGGAAAATCAACTAGGCTTGGTTTGATTTATGATTATGTTGAAAATGCCAAAAAATATGAGCCCAAGTACATTTGTCTCATCCGCCATTTCAGTACGTCAAACTCTTCTTGGAGTGGCTCCGTCGCGCCTTCTAAAGATGACTATTTTGCCGCAATCCACCATATCTCCCACATTGTTCGCCGAGACTTCTACATGGAGCGCACCCTCAACAAGCTCCAAATCTCCTACCTCAATTCTGAGCTTGTTTTTAGAGTCCTTCGCGCTTGCTCCAACTCTGGTACTGAGTCCTTCCGTTTCTTCAATTGGGCTTGCACTCACAACCCCTCTTACAAACCCACTACCCTTGAATTCGAAGAGCTCGTCAAAACCCTAGCTCGGACCAAAAAGTATACCACAATGTGGAAAGTTCTTCTTCAGATGAAGACGCAGAATCTCAAAATTTCACCGGAAACGATATCATTCATAATTCAAGAGTATGGTAAGCAAGGCCTTGTCGATAATGCAGTTACCATATTCAATCAATGTTCTAAATCTATCGATTGTCCACAAACAGTTGAGGTCTATAACGCATTACTTTTTGCGCTTTGTGAGGTTAAGATGTTTCATGGAGCTTATGCGTTGATTAGGAGGATGATTAGAAAAGGGGTAACTCCTGATAAAAAGACTTATGGAACTCTTGTAACTGGATGGTGCTCAGCGGGGAAGATGAGGGAAGCTCAGGAGTTCTTGGAGGAAATGAGCCAGAAGGGGTTCAATCCTCCTTTGCGAGGTCGTGATCTTTTGGTAGAAGGATTGCTGAATGCAGGGTATTTAGAATCTGCTAAGGATATGGTTAGAAAAATGACAAAAGAAGGATTTGTGCCTGATATAGGGACTTTTAATTCTCTGATTAATGTTATATGTAACTCTGGAGAAGTTGATTTTTGCATAAATATTTTTCATGAGGTGTGCAAGTTGGGGCTTTGTCCTGATATAAATACTTACAAGATTTTAATTCCAGCAACTTCAAAAGTAGGTAGGATTGATGAAGCATTCAGGCTTTTGCATTGCTGTATGGAGGATGGACATATACCGTTTCCAAGTCTTTATGGACCAATACTTAAAGGAATGTGTAAAATGGGTCAGTTTGATGATGCATTTTGCTTTTTCAGTGATATGAAACATAAGGGGCATCCACCAAATCGGCCAGTGTACACAATGTTGATAACAATGTGTGGACGTGGAGGGAGATTTGTTGATGCTGCTAATTACTTGATGGAAATGGCTGAATTTGGTTTACCTCCAATTTCAAGGTGCTTTGATATGGTTACTGATGGATTAAAGAACTGTGGAAAGCATGATTTAGCTAAGAAGATCGAGCAGCTTGAAGTTTCTATTCGAGGCATTTGATCTTGTAGTAAAATAATAAGCAAGCACTTTTTCTGCTTGAAGGATGTGGTTGAAATGGATATGAAAAATGAAAAACTATGGAAGTCGGGAAAAGGACAAACAAAGATGGTGGACAAGGTTTCATCACTATAACTCAAGGTTTCATCACTATCTTATTCTCTACTCTTTGCTGAACCTTCATCTTGCTGCTCTCTGCTATGCTTCTC

Coding sequence (CDS)

ATGCAAATGCAATTTGTTTTTAAGGTCCGATCTCACTTCGGAGGTGGAAAATCAACTAGGCTTGGTTTGATTTATGATTATGTTGAAAATGCCAAAAAATATGAGCCCAAGTACATTTGTCTCATCCGCCATTTCAGTACGTCAAACTCTTCTTGGAGTGGCTCCGTCGCGCCTTCTAAAGATGACTATTTTGCCGCAATCCACCATATCTCCCACATTGTTCGCCGAGACTTCTACATGGAGCGCACCCTCAACAAGCTCCAAATCTCCTACCTCAATTCTGAGCTTGTTTTTAGAGTCCTTCGCGCTTGCTCCAACTCTGGTACTGAGTCCTTCCGTTTCTTCAATTGGGCTTGCACTCACAACCCCTCTTACAAACCCACTACCCTTGAATTCGAAGAGCTCGTCAAAACCCTAGCTCGGACCAAAAAGTATACCACAATGTGGAAAGTTCTTCTTCAGATGAAGACGCAGAATCTCAAAATTTCACCGGAAACGATATCATTCATAATTCAAGAGTATGGTAAGCAAGGCCTTGTCGATAATGCAGTTACCATATTCAATCAATGTTCTAAATCTATCGATTGTCCACAAACAGTTGAGGTCTATAACGCATTACTTTTTGCGCTTTGTGAGGTTAAGATGTTTCATGGAGCTTATGCGTTGATTAGGAGGATGATTAGAAAAGGGGTAACTCCTGATAAAAAGACTTATGGAACTCTTGTAACTGGATGGTGCTCAGCGGGGAAGATGAGGGAAGCTCAGGAGTTCTTGGAGGAAATGAGCCAGAAGGGGTTCAATCCTCCTTTGCGAGGTCGTGATCTTTTGGTAGAAGGATTGCTGAATGCAGGGTATTTAGAATCTGCTAAGGATATGGTTAGAAAAATGACAAAAGAAGGATTTGTGCCTGATATAGGGACTTTTAATTCTCTGATTAATGTTATATGTAACTCTGGAGAAGTTGATTTTTGCATAAATATTTTTCATGAGGTGTGCAAGTTGGGGCTTTGTCCTGATATAAATACTTACAAGATTTTAATTCCAGCAACTTCAAAAGTAGGTAGGATTGATGAAGCATTCAGGCTTTTGCATTGCTGTATGGAGGATGGACATATACCGTTTCCAAGTCTTTATGGACCAATACTTAAAGGAATGTGTAAAATGGGTCAGTTTGATGATGCATTTTGCTTTTTCAGTGATATGAAACATAAGGGGCATCCACCAAATCGGCCAGTGTACACAATGTTGATAACAATGTGTGGACGTGGAGGGAGATTTGTTGATGCTGCTAATTACTTGATGGAAATGGCTGAATTTGGTTTACCTCCAATTTCAAGGTGCTTTGATATGGTTACTGATGGATTAAAGAACTGTGGAAAGCATGATTTAGCTAAGAAGATCGAGCAGCTTGAAGTTTCTATTCGAGGCATTTGA

Protein sequence

MQMQFVFKVRSHFGGGKSTRLGLIYDYVENAKKYEPKYICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELVFRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLEVSIRGI

Homology

[Close]

BLAST of Clc06G09940 vs. NCBI nr
Match: XP_038879743.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879744.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879746.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida] >XP_038879747.1 pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa hispida])

HSP 1 Score: 897.5 bits (2318), Expect = 5.0e-257
Identity = 431/459 (93.90%), Postives = 439/459 (95.64%), Query Frame = 0


Query: 19  TRLGLIYDYVENAKKYEPKYICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDF 78
           +R   I D +   +    KYICLIRHFSTSNSSW+GSVAPSKDDYFAAIHHISHIVRRDF
Sbjct: 7   SRKQFIIDVLHPGRPNVSKYICLIRHFSTSNSSWNGSVAPSKDDYFAAIHHISHIVRRDF 66

Query: 79  YMERTLNKLQISYLNSELVFRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKT 138
           YMERTLNKL+ISYLNSELVFRVLRACSNSGTESFRFFNWACTHNPSY+PTTLEFEELVKT
Sbjct: 67  YMERTLNKLRISYLNSELVFRVLRACSNSGTESFRFFNWACTHNPSYQPTTLEFEELVKT 126

Query: 139 LARTKKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQ 198
           LARTKKY TMWKVL QMK QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQ
Sbjct: 127 LARTKKYATMWKVLQQMKMQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQ 186

Query: 199 TVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFL 258
           TVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFL
Sbjct: 187 TVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFL 246

Query: 259 EEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNS 318
           EEMSQKGFNPPLRGRDLLVEGLLNAGY ESAKDMVRKMTKEG VPDIGTFNSLI+VICNS
Sbjct: 247 EEMSQKGFNPPLRGRDLLVEGLLNAGYFESAKDMVRKMTKEGSVPDIGTFNSLIDVICNS 306

Query: 319 GEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLY 378
           GEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFRLLHCC+EDGHIPFPSLY
Sbjct: 307 GEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHIPFPSLY 366

Query: 379 GPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE 438
           GPILKGMCK  QFDDAFCFFSDMK KGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE
Sbjct: 367 GPILKGMCKRSQFDDAFCFFSDMKRKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE 426

Query: 439 FGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLEVSIRGI 478
           FGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLEVSIRGI
Sbjct: 427 FGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLEVSIRGI 465

[Close]

BLAST of Clc06G09940 vs. NCBI nr
Match: XP_004142520.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis sativus] >KGN66807.1 hypothetical protein Csa_007547 [Cucumis sativus])

HSP 1 Score: 877.5 bits (2266), Expect = 5.3e-251
Identity = 420/441 (95.24%), Postives = 430/441 (97.51%), Query Frame = 0


Query: 37  KYICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSEL 96
           +YI L RHFS SNS  +GS APSKDDYFAAIHHISHIVRRDFYMERTLNKL+IS LNSEL
Sbjct: 15  RYIFLNRHFSNSNSLVNGSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSEL 74

Query: 97  VFRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMK 156
           VFRVLRACSNSGTESFRFFNWAC+HNPSY+PTTLEFEELVKTLART+KYTTMWKVLLQMK
Sbjct: 75  VFRVLRACSNSGTESFRFFNWACSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMK 134

Query: 157 TQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMF 216
           TQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMF
Sbjct: 135 TQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMF 194

Query: 217 HGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLL 276
           HGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKM+EAQEFLEEMSQKGFNPPLRGRDLL
Sbjct: 195 HGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLL 254

Query: 277 VEGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGL 336
           VEGLLNAGYLESAKDMVRKMTKEG VPDIGTFNSLI+VICNSGEVDFCINIFHEVCKLGL
Sbjct: 255 VEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGL 314

Query: 337 CPDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFC 396
           CPDINTYKILIPATSKVGRIDEAFRLLHCC+EDGH+PFPSLYGPILKGMCK GQFDDAFC
Sbjct: 315 CPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFC 374

Query: 397 FFSDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLK 456
           FF DMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE GLPPISRCFDMVTDGLK
Sbjct: 375 FFGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLK 434

Query: 457 NCGKHDLAKKIEQLEVSIRGI 478
           NCGKHDLAKKIEQLEVSIRGI
Sbjct: 435 NCGKHDLAKKIEQLEVSIRGI 455

[Close]

BLAST of Clc06G09940 vs. NCBI nr
Match: XP_008462724.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis melo] >KAA0062598.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK29718.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 869.0 bits (2244), Expect = 1.9e-248
Identity = 415/440 (94.32%), Postives = 429/440 (97.50%), Query Frame = 0


Query: 38  YICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELV 97
           YI LIR FS SNSS +GS APSKDDYFAAIHHISHIVRRDFYMERTLNKL+ISYLNSELV
Sbjct: 16  YISLIRCFSNSNSSVNGSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISYLNSELV 75

Query: 98  FRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKT 157
           FRVLRACSN GTESFRFFNWAC+HNPSY+PTTLE EELVKTLART+KYTTMWKVLLQMKT
Sbjct: 76  FRVLRACSNCGTESFRFFNWACSHNPSYQPTTLELEELVKTLARTRKYTTMWKVLLQMKT 135

Query: 158 QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH 217
           QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH
Sbjct: 136 QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH 195

Query: 218 GAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLV 277
           GAYALIRRMI+KGVTPDKKTYGTLVTGWCSAGKM+EAQEFLEEMSQKGFNPPLRGRDLLV
Sbjct: 196 GAYALIRRMIKKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLV 255

Query: 278 EGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLC 337
           EGLLNAGYLESAKDMVRKMTKEG VPDIGTFNSLI+VICNSGEVDFCINIFHEVCKLGLC
Sbjct: 256 EGLLNAGYLESAKDMVRKMTKEGCVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLC 315

Query: 338 PDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCF 397
           PDINTYKILIPATSKVGRIDEAFRLL+CC+EDGH+PFPSLYGPI+KGMCK GQFDDAFCF
Sbjct: 316 PDINTYKILIPATSKVGRIDEAFRLLNCCIEDGHVPFPSLYGPIIKGMCKRGQFDDAFCF 375

Query: 398 FSDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKN 457
           F DMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE GLPPISRCFDMVTDGLK+
Sbjct: 376 FGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKS 435

Query: 458 CGKHDLAKKIEQLEVSIRGI 478
           CGKHDLAKKIE+LEVSIRGI
Sbjct: 436 CGKHDLAKKIEKLEVSIRGI 455

[Close]

BLAST of Clc06G09940 vs. NCBI nr
Match: XP_022988097.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucurbita maxima])

HSP 1 Score: 852.8 bits (2202), Expect = 1.4e-243
Identity = 407/438 (92.92%), Postives = 427/438 (97.49%), Query Frame = 0


Query: 39  ICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELVF 98
           I LIRHFSTSNSS +GS  PSKDDYFAAIHHIS+IVRRD YMERTLNKL+ISYLNSELVF
Sbjct: 29  IFLIRHFSTSNSSSNGSGTPSKDDYFAAIHHISNIVRRDIYMERTLNKLRISYLNSELVF 88

Query: 99  RVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQ 158
           RVLRACSNSGTESFRFFNWAC++NPSY+PTTLEFEELVKTLARTKKYTTMWKVL QMKTQ
Sbjct: 89  RVLRACSNSGTESFRFFNWACSNNPSYQPTTLEFEELVKTLARTKKYTTMWKVLHQMKTQ 148

Query: 159 NLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHG 218
           NLKISPETISF+I+EYGKQGLVD AVTIFNQCSKSIDCPQTVEVYNALLFALCE+KMFHG
Sbjct: 149 NLKISPETISFVIEEYGKQGLVDGAVTIFNQCSKSIDCPQTVEVYNALLFALCEIKMFHG 208

Query: 219 AYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVE 278
           AYALIRRMIRKGVTPDKKTYG LVTGWCS+GKM+EAQ+FLEEMSQKGFNPPLRGRDLLVE
Sbjct: 209 AYALIRRMIRKGVTPDKKTYGILVTGWCSSGKMKEAQQFLEEMSQKGFNPPLRGRDLLVE 268

Query: 279 GLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCP 338
           GLLNAGYLESAK+MVRKMTKEG VPD+GTFNSLINVIC+SGEVDFCINI+HEVCKLGLCP
Sbjct: 269 GLLNAGYLESAKNMVRKMTKEGSVPDLGTFNSLINVICDSGEVDFCINIYHEVCKLGLCP 328

Query: 339 DINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFF 398
           DINTYKILIPATSKVGRIDEAFRLL+ C+EDGHIPFPSLYGPI+KGMCK GQFDDAFCFF
Sbjct: 329 DINTYKILIPATSKVGRIDEAFRLLNYCIEDGHIPFPSLYGPIIKGMCKRGQFDDAFCFF 388

Query: 399 SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNC 458
           SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLK+C
Sbjct: 389 SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKSC 448

Query: 459 GKHDLAKKIEQLEVSIRG 477
           GKHDLAKKIEQLEVSIRG
Sbjct: 449 GKHDLAKKIEQLEVSIRG 466

[Close]

BLAST of Clc06G09940 vs. NCBI nr
Match: XP_022960812.1 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucurbita moschata])

HSP 1 Score: 848.2 bits (2190), Expect = 3.5e-242
Identity = 406/438 (92.69%), Postives = 425/438 (97.03%), Query Frame = 0


Query: 39  ICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELVF 98
           I LIRHFSTSNSS +GS  PSKDDYFAAIHHIS+IVRRD YMERTLNKL+ISYLNSELVF
Sbjct: 29  IFLIRHFSTSNSSSNGSGTPSKDDYFAAIHHISNIVRRDIYMERTLNKLRISYLNSELVF 88

Query: 99  RVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQ 158
           RVLRACSNSGTESFRFFNWAC++NPSY+PTTLEFEELVKTLARTKKYTTMWKVL QMKTQ
Sbjct: 89  RVLRACSNSGTESFRFFNWACSNNPSYQPTTLEFEELVKTLARTKKYTTMWKVLHQMKTQ 148

Query: 159 NLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHG 218
           NLKISPETISF+I+EYGKQGLVD AVTIFNQCSKSIDCPQTVEVYNALLFALCE+KMFHG
Sbjct: 149 NLKISPETISFVIEEYGKQGLVDGAVTIFNQCSKSIDCPQTVEVYNALLFALCEIKMFHG 208

Query: 219 AYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVE 278
           AYALIRRMIRKGVTPDKKTYG LVTGWCS+GKM+EAQ+FLEEMSQKGFNPPLRGRDLLVE
Sbjct: 209 AYALIRRMIRKGVTPDKKTYGILVTGWCSSGKMKEAQQFLEEMSQKGFNPPLRGRDLLVE 268

Query: 279 GLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCP 338
           GLLNAGYLESAK+MVRKM KEG VPD+GTFNSLINVICNSGEVDFCINI+HEVCKLGLCP
Sbjct: 269 GLLNAGYLESAKNMVRKMIKEGSVPDLGTFNSLINVICNSGEVDFCINIYHEVCKLGLCP 328

Query: 339 DINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFF 398
           DINTYKILIPATSKVGRIDEAFRLL+ C+EDGHIPFPSLYGPI+KGMCK GQFDDAFCFF
Sbjct: 329 DINTYKILIPATSKVGRIDEAFRLLNYCIEDGHIPFPSLYGPIIKGMCKRGQFDDAFCFF 388

Query: 399 SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNC 458
           SDMK KGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLK+C
Sbjct: 389 SDMKLKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKSC 448

Query: 459 GKHDLAKKIEQLEVSIRG 477
           GKHDLAKKIEQLEVSIRG
Sbjct: 449 GKHDLAKKIEQLEVSIRG 466

[Close]

BLAST of Clc06G09940 vs. ExPASy Swiss-Prot
Match: Q94JX6 (Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g18390 PE=2 SV=2)

HSP 1 Score: 632.1 bits (1629), Expect = 5.1e-180
Identity = 303/436 (69.50%), Postives = 356/436 (81.65%), Query Frame = 0


Query: 42  IRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELVFRVL 101
           IRHF++     S    P+K DYFAAI+H+ +IVRR+ + ER+LN L++  + SE VFRVL
Sbjct: 26  IRHFNSLEPLQSSDSTPTKGDYFAAINHVVNIVRREIHPERSLNSLRLP-VTSEFVFRVL 85

Query: 102 RACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLK 161
           RA S S  +S RFFNWA   NPSY PT++E+EEL K+LA  KKY +MWK+L QMK  +L 
Sbjct: 86  RATSRSSNDSLRFFNWA-RSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLD 145

Query: 162 ISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYA 221
           IS ET+ FII++YGK G VD AV +FN   K++ C QTV+VYN+LL ALC+VKMFHGAYA
Sbjct: 146 ISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYA 205

Query: 222 LIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLL 281
           LIRRMIRKG+ PDK+TY  LV GWCSAGKM+EAQEFL+EMS++GFNPP RGRDLL+EGLL
Sbjct: 206 LIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLL 265

Query: 282 NAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDIN 341
           NAGYLESAK+MV KMTK GFVPDI TFN LI  I  SGEV+FCI +++  CKLGLC DI+
Sbjct: 266 NAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDID 325

Query: 342 TYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDM 401
           TYK LIPA SK+G+IDEAFRLL+ C+EDGH PFPSLY PI+KGMC+ G FDDAF FFSDM
Sbjct: 326 TYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDM 385

Query: 402 KHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCGKH 461
           K K HPPNRPVYTMLITMCGRGG+FVDAANYL+EM E GL PISRCFDMVTDGLKN GKH
Sbjct: 386 KVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNGGKH 445

Query: 462 DLAKKIEQLEVSIRGI 478
           DLA +IEQLEV +RG+
Sbjct: 446 DLAMRIEQLEVQLRGV 459

[Close]

BLAST of Clc06G09940 vs. ExPASy Swiss-Prot
Match: Q9FH87 (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana OX=3702 GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.6e-40
Identity = 111/407 (27.27%), Postives = 197/407 (48.40%), Query Frame = 0


Query: 59  SKDDYFAAIHHISHIVRRDFY-----MERTLNKLQISYLNSELVFRVLRACSNSGTESFR 118
           SK D FA+    S+ + R F+     +E  LN+  +  L   L+ RVL  C ++G   +R
Sbjct: 74  SKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVE-LRPGLIERVLNRCGDAGNLGYR 133

Query: 119 FFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLK-ISPETISFIIQ 178
           FF WA    P Y  +   ++ +VK L++ +++  +W ++ +M+ +N + I PE    ++Q
Sbjct: 134 FFVWA-AKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQ 193

Query: 179 EYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVT 238
            +    +V  A+ + ++  K    P    V+  LL ALC+      A  L   M R    
Sbjct: 194 RFASADMVKKAIEVLDEMPKFGFEPDEY-VFGCLLDALCKHGSVKDAAKLFEDM-RMRFP 253

Query: 239 PDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDM 298
            + + + +L+ GWC  GKM EA+  L +M++ GF P +     L+ G  NAG +  A D+
Sbjct: 254 VNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDL 313

Query: 299 VRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSK 358
           +R M + GF P+   +  LI  +C    ++  + +F E+ +     D+ TY  L+    K
Sbjct: 314 LRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCK 373

Query: 359 VGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPV 418
            G+ID+ + +L   ++ G +P    Y  I+    K   F++       M+   + P+  +
Sbjct: 374 WGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGI 433

Query: 419 YTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCG 460
           Y ++I +  + G   +A     EM E GL P    F ++ +GL + G
Sbjct: 434 YNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQG 476

[Close]

BLAST of Clc06G09940 vs. ExPASy Swiss-Prot
Match: Q9S7R4 (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OTP43 PE=2 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-38
Identity = 105/413 (25.42%), Postives = 183/413 (44.31%), Query Frame = 0


Query: 96  LVFRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQM 155
           LV  VL+   N G ++ +FF++   H+  Y      F+  +   AR   + T+W ++ +M
Sbjct: 58  LVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRM 117

Query: 156 KTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKM 215
           ++  +  SP+T + + + Y   G  D AV +F    +   C Q +  +N +L  LC+ K 
Sbjct: 118 RSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEH-GCFQDLASFNTILDVLCKSKR 177

Query: 216 FHGAYALIR----------------------------------RMIRKGVTPDKKTYGTL 275
              AY L R                                   M+ +G+ P+  TY T+
Sbjct: 178 VEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTM 237

Query: 276 VTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGF 335
           + G+  AG++R A EF  EM ++     +     +V G   AG ++ A+++  +M +EG 
Sbjct: 238 LKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGV 297

Query: 336 VPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFR 395
           +P + T+N++I V+C    V+  + +F E+ + G  P++ TY +LI      G       
Sbjct: 298 LPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEE 357

Query: 396 LLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPVYTMLIT--- 455
           L+     +G  P    Y  +++   +  + + A   F  M      PN   Y +LI+   
Sbjct: 358 LMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMF 417

Query: 456 MCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLE 472
           +  R    V A   L+EM E G  P    F+ V +GL   G    AK+I +L+
Sbjct: 418 VRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQ 469

[Close]

BLAST of Clc06G09940 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.8e-37
Identity = 97/346 (28.03%), Postives = 163/346 (47.11%), Query Frame = 0


Query: 127 PTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLKISPETISFIIQ-----EYGKQGLVD 186
           P  + +  L+    + +K    +K+L  M  + L+  P  IS+ +        G+   V 
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLE--PNLISYNVVINGLCREGRMKEVS 297

Query: 187 NAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTL 246
             +T  N+   S+D       YN L+   C+   FH A  +   M+R G+TP   TY +L
Sbjct: 298 FVLTEMNRRGYSLD----EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 357

Query: 247 VTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGF 306
           +   C AG M  A EFL++M  +G  P  R    LV+G    GY+  A  ++R+M   GF
Sbjct: 358 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 417

Query: 307 VPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFR 366
            P + T+N+LIN  C +G+++  I +  ++ + GL PD+ +Y  ++    +   +DEA R
Sbjct: 418 SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALR 477

Query: 367 LLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPVYTMLITMCG 426
           +    +E G  P    Y  +++G C+  +  +A   + +M   G PP+   YT LI    
Sbjct: 478 VKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYC 537

Query: 427 RGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCGKHDLAKKI 468
             G    A     EM E G+ P    + ++ +GL    +   AK++
Sbjct: 538 MEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577

[Close]

BLAST of Clc06G09940 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-35
Identity = 93/338 (27.51%), Postives = 162/338 (47.93%), Query Frame = 0


Query: 122 NPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQGLVD 181
           N   +P  + +  L++ L    +++   ++L  M  + +  +  T S +I  + K+G + 
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342

Query: 182 NAVTIFNQCSK-SIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGT 241
            A  ++++  K SID    +  Y++L+   C       A  +   MI K   P+  TY T
Sbjct: 343 EAEKLYDEMIKRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 402

Query: 242 LVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEG 301
           L+ G+C A ++ E  E   EMSQ+G        + L++GL  AG  + A+ + +KM  +G
Sbjct: 403 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 462

Query: 302 FVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAF 361
             PDI T++ L++ +C  G+++  + +F  + K  + PDI TY I+I    K G++++ +
Sbjct: 463 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 522

Query: 362 RLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPVYTMLITMC 421
            L       G  P   +Y  ++ G C+ G  ++A   F +MK  G  PN   Y  LI   
Sbjct: 523 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 582

Query: 422 GRGGRFVDAANYLMEMAEFGL----PPISRCFDMVTDG 455
            R G    +A  + EM   G       IS   +M+ DG
Sbjct: 583 LRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 618

[Close]

BLAST of Clc06G09940 vs. ExPASy TrEMBL
Match: A0A0A0M105 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G695420 PE=4 SV=1)

HSP 1 Score: 877.5 bits (2266), Expect = 2.6e-251
Identity = 420/441 (95.24%), Postives = 430/441 (97.51%), Query Frame = 0


Query: 37  KYICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSEL 96
           +YI L RHFS SNS  +GS APSKDDYFAAIHHISHIVRRDFYMERTLNKL+IS LNSEL
Sbjct: 15  RYIFLNRHFSNSNSLVNGSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSEL 74

Query: 97  VFRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMK 156
           VFRVLRACSNSGTESFRFFNWAC+HNPSY+PTTLEFEELVKTLART+KYTTMWKVLLQMK
Sbjct: 75  VFRVLRACSNSGTESFRFFNWACSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMK 134

Query: 157 TQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMF 216
           TQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMF
Sbjct: 135 TQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMF 194

Query: 217 HGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLL 276
           HGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKM+EAQEFLEEMSQKGFNPPLRGRDLL
Sbjct: 195 HGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLL 254

Query: 277 VEGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGL 336
           VEGLLNAGYLESAKDMVRKMTKEG VPDIGTFNSLI+VICNSGEVDFCINIFHEVCKLGL
Sbjct: 255 VEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGL 314

Query: 337 CPDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFC 396
           CPDINTYKILIPATSKVGRIDEAFRLLHCC+EDGH+PFPSLYGPILKGMCK GQFDDAFC
Sbjct: 315 CPDINTYKILIPATSKVGRIDEAFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFC 374

Query: 397 FFSDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLK 456
           FF DMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE GLPPISRCFDMVTDGLK
Sbjct: 375 FFGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLK 434

Query: 457 NCGKHDLAKKIEQLEVSIRGI 478
           NCGKHDLAKKIEQLEVSIRGI
Sbjct: 435 NCGKHDLAKKIEQLEVSIRGI 455

[Close]

BLAST of Clc06G09940 vs. ExPASy TrEMBL
Match: A0A5A7V4T7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00300 PE=4 SV=1)

HSP 1 Score: 869.0 bits (2244), Expect = 9.1e-249
Identity = 415/440 (94.32%), Postives = 429/440 (97.50%), Query Frame = 0


Query: 38  YICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELV 97
           YI LIR FS SNSS +GS APSKDDYFAAIHHISHIVRRDFYMERTLNKL+ISYLNSELV
Sbjct: 16  YISLIRCFSNSNSSVNGSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISYLNSELV 75

Query: 98  FRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKT 157
           FRVLRACSN GTESFRFFNWAC+HNPSY+PTTLE EELVKTLART+KYTTMWKVLLQMKT
Sbjct: 76  FRVLRACSNCGTESFRFFNWACSHNPSYQPTTLELEELVKTLARTRKYTTMWKVLLQMKT 135

Query: 158 QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH 217
           QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH
Sbjct: 136 QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH 195

Query: 218 GAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLV 277
           GAYALIRRMI+KGVTPDKKTYGTLVTGWCSAGKM+EAQEFLEEMSQKGFNPPLRGRDLLV
Sbjct: 196 GAYALIRRMIKKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLV 255

Query: 278 EGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLC 337
           EGLLNAGYLESAKDMVRKMTKEG VPDIGTFNSLI+VICNSGEVDFCINIFHEVCKLGLC
Sbjct: 256 EGLLNAGYLESAKDMVRKMTKEGCVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLC 315

Query: 338 PDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCF 397
           PDINTYKILIPATSKVGRIDEAFRLL+CC+EDGH+PFPSLYGPI+KGMCK GQFDDAFCF
Sbjct: 316 PDINTYKILIPATSKVGRIDEAFRLLNCCIEDGHVPFPSLYGPIIKGMCKRGQFDDAFCF 375

Query: 398 FSDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKN 457
           F DMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE GLPPISRCFDMVTDGLK+
Sbjct: 376 FGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKS 435

Query: 458 CGKHDLAKKIEQLEVSIRGI 478
           CGKHDLAKKIE+LEVSIRGI
Sbjct: 436 CGKHDLAKKIEKLEVSIRGI 455

[Close]

BLAST of Clc06G09940 vs. ExPASy TrEMBL
Match: A0A1S3CJ74 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103501022 PE=4 SV=1)

HSP 1 Score: 869.0 bits (2244), Expect = 9.1e-249
Identity = 415/440 (94.32%), Postives = 429/440 (97.50%), Query Frame = 0


Query: 38  YICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELV 97
           YI LIR FS SNSS +GS APSKDDYFAAIHHISHIVRRDFYMERTLNKL+ISYLNSELV
Sbjct: 16  YISLIRCFSNSNSSVNGSTAPSKDDYFAAIHHISHIVRRDFYMERTLNKLRISYLNSELV 75

Query: 98  FRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKT 157
           FRVLRACSN GTESFRFFNWAC+HNPSY+PTTLE EELVKTLART+KYTTMWKVLLQMKT
Sbjct: 76  FRVLRACSNCGTESFRFFNWACSHNPSYQPTTLELEELVKTLARTRKYTTMWKVLLQMKT 135

Query: 158 QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH 217
           QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH
Sbjct: 136 QNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFH 195

Query: 218 GAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLV 277
           GAYALIRRMI+KGVTPDKKTYGTLVTGWCSAGKM+EAQEFLEEMSQKGFNPPLRGRDLLV
Sbjct: 196 GAYALIRRMIKKGVTPDKKTYGTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLV 255

Query: 278 EGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLC 337
           EGLLNAGYLESAKDMVRKMTKEG VPDIGTFNSLI+VICNSGEVDFCINIFHEVCKLGLC
Sbjct: 256 EGLLNAGYLESAKDMVRKMTKEGCVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLC 315

Query: 338 PDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCF 397
           PDINTYKILIPATSKVGRIDEAFRLL+CC+EDGH+PFPSLYGPI+KGMCK GQFDDAFCF
Sbjct: 316 PDINTYKILIPATSKVGRIDEAFRLLNCCIEDGHVPFPSLYGPIIKGMCKRGQFDDAFCF 375

Query: 398 FSDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKN 457
           F DMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAE GLPPISRCFDMVTDGLK+
Sbjct: 376 FGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKS 435

Query: 458 CGKHDLAKKIEQLEVSIRGI 478
           CGKHDLAKKIE+LEVSIRGI
Sbjct: 436 CGKHDLAKKIEKLEVSIRGI 455

[Close]

BLAST of Clc06G09940 vs. ExPASy TrEMBL
Match: A0A6J1JC50 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111485446 PE=4 SV=1)

HSP 1 Score: 852.8 bits (2202), Expect = 6.8e-244
Identity = 407/438 (92.92%), Postives = 427/438 (97.49%), Query Frame = 0


Query: 39  ICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELVF 98
           I LIRHFSTSNSS +GS  PSKDDYFAAIHHIS+IVRRD YMERTLNKL+ISYLNSELVF
Sbjct: 29  IFLIRHFSTSNSSSNGSGTPSKDDYFAAIHHISNIVRRDIYMERTLNKLRISYLNSELVF 88

Query: 99  RVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQ 158
           RVLRACSNSGTESFRFFNWAC++NPSY+PTTLEFEELVKTLARTKKYTTMWKVL QMKTQ
Sbjct: 89  RVLRACSNSGTESFRFFNWACSNNPSYQPTTLEFEELVKTLARTKKYTTMWKVLHQMKTQ 148

Query: 159 NLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHG 218
           NLKISPETISF+I+EYGKQGLVD AVTIFNQCSKSIDCPQTVEVYNALLFALCE+KMFHG
Sbjct: 149 NLKISPETISFVIEEYGKQGLVDGAVTIFNQCSKSIDCPQTVEVYNALLFALCEIKMFHG 208

Query: 219 AYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVE 278
           AYALIRRMIRKGVTPDKKTYG LVTGWCS+GKM+EAQ+FLEEMSQKGFNPPLRGRDLLVE
Sbjct: 209 AYALIRRMIRKGVTPDKKTYGILVTGWCSSGKMKEAQQFLEEMSQKGFNPPLRGRDLLVE 268

Query: 279 GLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCP 338
           GLLNAGYLESAK+MVRKMTKEG VPD+GTFNSLINVIC+SGEVDFCINI+HEVCKLGLCP
Sbjct: 269 GLLNAGYLESAKNMVRKMTKEGSVPDLGTFNSLINVICDSGEVDFCINIYHEVCKLGLCP 328

Query: 339 DINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFF 398
           DINTYKILIPATSKVGRIDEAFRLL+ C+EDGHIPFPSLYGPI+KGMCK GQFDDAFCFF
Sbjct: 329 DINTYKILIPATSKVGRIDEAFRLLNYCIEDGHIPFPSLYGPIIKGMCKRGQFDDAFCFF 388

Query: 399 SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNC 458
           SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLK+C
Sbjct: 389 SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKSC 448

Query: 459 GKHDLAKKIEQLEVSIRG 477
           GKHDLAKKIEQLEVSIRG
Sbjct: 449 GKHDLAKKIEQLEVSIRG 466

[Close]

BLAST of Clc06G09940 vs. ExPASy TrEMBL
Match: A0A6J1H8G8 (pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461504 PE=4 SV=1)

HSP 1 Score: 848.2 bits (2190), Expect = 1.7e-242
Identity = 406/438 (92.69%), Postives = 425/438 (97.03%), Query Frame = 0


Query: 39  ICLIRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELVF 98
           I LIRHFSTSNSS +GS  PSKDDYFAAIHHIS+IVRRD YMERTLNKL+ISYLNSELVF
Sbjct: 29  IFLIRHFSTSNSSSNGSGTPSKDDYFAAIHHISNIVRRDIYMERTLNKLRISYLNSELVF 88

Query: 99  RVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQ 158
           RVLRACSNSGTESFRFFNWAC++NPSY+PTTLEFEELVKTLARTKKYTTMWKVL QMKTQ
Sbjct: 89  RVLRACSNSGTESFRFFNWACSNNPSYQPTTLEFEELVKTLARTKKYTTMWKVLHQMKTQ 148

Query: 159 NLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHG 218
           NLKISPETISF+I+EYGKQGLVD AVTIFNQCSKSIDCPQTVEVYNALLFALCE+KMFHG
Sbjct: 149 NLKISPETISFVIEEYGKQGLVDGAVTIFNQCSKSIDCPQTVEVYNALLFALCEIKMFHG 208

Query: 219 AYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVE 278
           AYALIRRMIRKGVTPDKKTYG LVTGWCS+GKM+EAQ+FLEEMSQKGFNPPLRGRDLLVE
Sbjct: 209 AYALIRRMIRKGVTPDKKTYGILVTGWCSSGKMKEAQQFLEEMSQKGFNPPLRGRDLLVE 268

Query: 279 GLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCP 338
           GLLNAGYLESAK+MVRKM KEG VPD+GTFNSLINVICNSGEVDFCINI+HEVCKLGLCP
Sbjct: 269 GLLNAGYLESAKNMVRKMIKEGSVPDLGTFNSLINVICNSGEVDFCINIYHEVCKLGLCP 328

Query: 339 DINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFF 398
           DINTYKILIPATSKVGRIDEAFRLL+ C+EDGHIPFPSLYGPI+KGMCK GQFDDAFCFF
Sbjct: 329 DINTYKILIPATSKVGRIDEAFRLLNYCIEDGHIPFPSLYGPIIKGMCKRGQFDDAFCFF 388

Query: 399 SDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNC 458
           SDMK KGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLK+C
Sbjct: 389 SDMKLKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKSC 448

Query: 459 GKHDLAKKIEQLEVSIRG 477
           GKHDLAKKIEQLEVSIRG
Sbjct: 449 GKHDLAKKIEQLEVSIRG 466

[Close]

BLAST of Clc06G09940 vs. TAIR 10
Match: AT5G18390.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 632.1 bits (1629), Expect = 3.6e-181
Identity = 303/436 (69.50%), Postives = 356/436 (81.65%), Query Frame = 0


Query: 42  IRHFSTSNSSWSGSVAPSKDDYFAAIHHISHIVRRDFYMERTLNKLQISYLNSELVFRVL 101
           IRHF++     S    P+K DYFAAI+H+ +IVRR+ + ER+LN L++  + SE VFRVL
Sbjct: 26  IRHFNSLEPLQSSDSTPTKGDYFAAINHVVNIVRREIHPERSLNSLRLP-VTSEFVFRVL 85

Query: 102 RACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLK 161
           RA S S  +S RFFNWA   NPSY PT++E+EEL K+LA  KKY +MWK+L QMK  +L 
Sbjct: 86  RATSRSSNDSLRFFNWA-RSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLD 145

Query: 162 ISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYA 221
           IS ET+ FII++YGK G VD AV +FN   K++ C QTV+VYN+LL ALC+VKMFHGAYA
Sbjct: 146 ISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYA 205

Query: 222 LIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLL 281
           LIRRMIRKG+ PDK+TY  LV GWCSAGKM+EAQEFL+EMS++GFNPP RGRDLL+EGLL
Sbjct: 206 LIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLL 265

Query: 282 NAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDIN 341
           NAGYLESAK+MV KMTK GFVPDI TFN LI  I  SGEV+FCI +++  CKLGLC DI+
Sbjct: 266 NAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLCVDID 325

Query: 342 TYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDM 401
           TYK LIPA SK+G+IDEAFRLL+ C+EDGH PFPSLY PI+KGMC+ G FDDAF FFSDM
Sbjct: 326 TYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDM 385

Query: 402 KHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCGKH 461
           K K HPPNRPVYTMLITMCGRGG+FVDAANYL+EM E GL PISRCFDMVTDGLKN GKH
Sbjct: 386 KVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNGGKH 445

Query: 462 DLAKKIEQLEVSIRGI 478
           DLA +IEQLEV +RG+
Sbjct: 446 DLAMRIEQLEVQLRGV 459

[Close]

BLAST of Clc06G09940 vs. TAIR 10
Match: AT5G65820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 167.2 bits (422), Expect = 3.3e-41
Identity = 111/407 (27.27%), Postives = 197/407 (48.40%), Query Frame = 0


Query: 59  SKDDYFAAIHHISHIVRRDFY-----MERTLNKLQISYLNSELVFRVLRACSNSGTESFR 118
           SK D FA+    S+ + R F+     +E  LN+  +  L   L+ RVL  C ++G   +R
Sbjct: 74  SKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVE-LRPGLIERVLNRCGDAGNLGYR 133

Query: 119 FFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLK-ISPETISFIIQ 178
           FF WA    P Y  +   ++ +VK L++ +++  +W ++ +M+ +N + I PE    ++Q
Sbjct: 134 FFVWA-AKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQ 193

Query: 179 EYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVT 238
            +    +V  A+ + ++  K    P    V+  LL ALC+      A  L   M R    
Sbjct: 194 RFASADMVKKAIEVLDEMPKFGFEPDEY-VFGCLLDALCKHGSVKDAAKLFEDM-RMRFP 253

Query: 239 PDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDM 298
            + + + +L+ GWC  GKM EA+  L +M++ GF P +     L+ G  NAG +  A D+
Sbjct: 254 VNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDL 313

Query: 299 VRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSK 358
           +R M + GF P+   +  LI  +C    ++  + +F E+ +     D+ TY  L+    K
Sbjct: 314 LRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCK 373

Query: 359 VGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPV 418
            G+ID+ + +L   ++ G +P    Y  I+    K   F++       M+   + P+  +
Sbjct: 374 WGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGI 433

Query: 419 YTMLITMCGRGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCG 460
           Y ++I +  + G   +A     EM E GL P    F ++ +GL + G
Sbjct: 434 YNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQG 476

[Close]

BLAST of Clc06G09940 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 3.4e-38
Identity = 97/346 (28.03%), Postives = 163/346 (47.11%), Query Frame = 0


Query: 127 PTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLKISPETISFIIQ-----EYGKQGLVD 186
           P  + +  L+    + +K    +K+L  M  + L+  P  IS+ +        G+   V 
Sbjct: 238 PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLE--PNLISYNVVINGLCREGRMKEVS 297

Query: 187 NAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGTL 246
             +T  N+   S+D       YN L+   C+   FH A  +   M+R G+TP   TY +L
Sbjct: 298 FVLTEMNRRGYSLD----EVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 357

Query: 247 VTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGF 306
           +   C AG M  A EFL++M  +G  P  R    LV+G    GY+  A  ++R+M   GF
Sbjct: 358 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 417

Query: 307 VPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAFR 366
            P + T+N+LIN  C +G+++  I +  ++ + GL PD+ +Y  ++    +   +DEA R
Sbjct: 418 SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALR 477

Query: 367 LLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPVYTMLITMCG 426
           +    +E G  P    Y  +++G C+  +  +A   + +M   G PP+   YT LI    
Sbjct: 478 VKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYC 537

Query: 427 RGGRFVDAANYLMEMAEFGLPPISRCFDMVTDGLKNCGKHDLAKKI 468
             G    A     EM E G+ P    + ++ +GL    +   AK++
Sbjct: 538 MEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577

[Close]

BLAST of Clc06G09940 vs. TAIR 10
Match: AT1G74900.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 152.9 bits (385), Expect = 6.4e-37
Identity = 85/322 (26.40%), Postives = 157/322 (48.76%), Query Frame = 0


Query: 96  LVFRVLRACSNSGTESFRFFNWACTHNPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQM 155
           LV  VL+   N G ++ +FF++   H+  Y      F+  +   AR   + T+W ++ +M
Sbjct: 58  LVNSVLKRLWNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRM 117

Query: 156 KTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKM 215
           ++  +  SP+T + + + Y   G  D AV +F    +   C Q +  +N +L  LC+ K 
Sbjct: 118 RSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEH-GCFQDLASFNTILDVLCKSKR 177

Query: 216 FHGAYALIRRMIRKGVTPDKKTYGTLVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDL 275
              AY L  R +R   + D  TY  ++ GWC   +  +A E L+EM ++G NP L   + 
Sbjct: 178 VEKAYELF-RALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNT 237

Query: 276 LVEGLLNAGYLESAKDMVRKMTKEGFVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLG 335
           +++G   AG +  A +   +M K     D+ T+ ++++    +GE+    N+F E+ + G
Sbjct: 238 MLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG 297

Query: 336 LCPDINTYKILIPATSKVGRIDEAFRLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAF 395
           + P + TY  +I    K   ++ A  +    +  G+ P  + Y  +++G+   G+F    
Sbjct: 298 VLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGE 357

Query: 396 CFFSDMKHKGHPPNRPVYTMLI 418
                M+++G  PN   Y M+I
Sbjct: 358 ELMQRMENEGCEPNFQTYNMMI 377

[Close]

BLAST of Clc06G09940 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-36
Identity = 93/338 (27.51%), Postives = 162/338 (47.93%), Query Frame = 0


Query: 122 NPSYKPTTLEFEELVKTLARTKKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQGLVD 181
           N   +P  + +  L++ L    +++   ++L  M  + +  +  T S +I  + K+G + 
Sbjct: 283 NKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342

Query: 182 NAVTIFNQCSK-SIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTYGT 241
            A  ++++  K SID    +  Y++L+   C       A  +   MI K   P+  TY T
Sbjct: 343 EAEKLYDEMIKRSID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 402

Query: 242 LVTGWCSAGKMREAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEG 301
           L+ G+C A ++ E  E   EMSQ+G        + L++GL  AG  + A+ + +KM  +G
Sbjct: 403 LIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDG 462

Query: 302 FVPDIGTFNSLINVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDEAF 361
             PDI T++ L++ +C  G+++  + +F  + K  + PDI TY I+I    K G++++ +
Sbjct: 463 VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGW 522

Query: 362 RLLHCCMEDGHIPFPSLYGPILKGMCKMGQFDDAFCFFSDMKHKGHPPNRPVYTMLITMC 421
            L       G  P   +Y  ++ G C+ G  ++A   F +MK  G  PN   Y  LI   
Sbjct: 523 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRAR 582

Query: 422 GRGGRFVDAANYLMEMAEFGL----PPISRCFDMVTDG 455
            R G    +A  + EM   G       IS   +M+ DG
Sbjct: 583 LRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDG 618

The following BLAST results are available for this feature:

BLAST of Clc06G09940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879743.1	5.0e-257	93.90	pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Benincasa ...	[more]
XP_004142520.1	5.3e-251	95.24	pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucumis sa...	[more]
XP_008462724.1	1.9e-248	94.32	PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial ...	[more]
XP_022988097.1	1.4e-243	92.92	pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucurbita ...	[more]
XP_022960812.1	3.5e-242	92.69	pentatricopeptide repeat-containing protein At5g18390, mitochondrial [Cucurbita ...	[more]

BLAST of Clc06G09940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JX6	5.1e-180	69.50	Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidop...	[more]
Q9FH87	4.6e-40	27.27	Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis th...	[more]
Q9S7R4	1.1e-38	25.42	Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop...	[more]
Q9FIX3	4.8e-37	28.03	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
Q9LQ14	1.5e-35	27.51	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]

BLAST of Clc06G09940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M105	2.6e-251	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G695420 PE=4 SV=1	[more]
A0A5A7V4T7	9.1e-249	94.32	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CJ74	9.1e-249	94.32	pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucumis ...	[more]
A0A6J1JC50	6.8e-244	92.92	pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucurbit...	[more]
A0A6J1H8G8	1.7e-242	92.69	pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Cucurbit...	[more]

BLAST of Clc06G09940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18390.1	3.6e-181	69.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G65820.1	3.3e-41	27.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G39710.1	3.4e-38	28.03	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74900.1	6.4e-37	26.40	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62930.1	1.1e-36	27.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 307..340 e-value: 5.8E-5 score: 21.0 coord: 202..234 e-value: 3.8E-6 score: 24.7 coord: 276..305 e-value: 3.2E-4 score: 18.7 coord: 237..268 e-value: 1.3E-4 score: 19.9 coord: 412..443 e-value: 3.7E-4 score: 18.5 coord: 378..409 e-value: 3.2E-7 score: 28.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 380..420 e-value: 2.6E-9 score: 37.1 coord: 303..349 e-value: 3.3E-8 score: 33.6
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 229..262 e-value: 2.0E-10 score: 40.2
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 276..301 e-value: 0.53 score: 10.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 339..373 score: 9.602157
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 374..408 score: 10.588674
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 304..338 score: 10.205028
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 409..443 score: 10.073492
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 199..233 score: 10.840783
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 234..268 score: 12.693243
None	No IPR available	GENE3D	3.30.70.3370		coord: 2..53 e-value: 1.7E-10 score: 42.6
None	No IPR available	PANTHER	PTHR45613:SF30	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL	coord: 38..476
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 38..476
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 5..40 e-value: 2.6E-10 score: 40.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 99..267 e-value: 2.2E-28 score: 101.6 coord: 329..474 e-value: 2.7E-27 score: 98.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 268..328 e-value: 1.1E-9 score: 40.1
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 5..40

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc06G09940.1	Clc06G09940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome